ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf18o16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os12g14080:12012.t01274:unspliced-genomic expressed protein 194 7e-63
2LOC_Os08g43180:12008.t04043:unspliced-genomic expressed protein 30 0.24
3LOC_Os08g43170:12008.t04042:unspliced-genomic hydroxymethylg... 30 0.36
4LOC_Os11g07600:12011.t00651:unspliced-genomic ATPase, couple... 35 0.59
5LOC_Os06g17530:12006.t01625:unspliced-genomic PE-PGRS family... 34 1.5
6LOC_Os02g03840:12002.t00283:unspliced-genomic expressed protein 34 1.5
7LOC_Os11g43020:12011.t03832:unspliced-genomic transposon pro... 29 1.6
8LOC_Os08g43480:12008.t04073:unspliced-genomic zinc finger, C... 34 2.1
9LOC_Os06g01400:12006.t00039:unspliced-genomic glycyl-tRNA sy... 34 2.1
10LOC_Os08g30070:12008.t02760:unspliced-genomic expressed protein 32 2.2
11LOC_Os11g34360:12011.t02989:unspliced-genomic TMEM87A protei... 33 4.0
12LOC_Os12g10490:12012.t00926:unspliced-genomic conserved hypo... 30 4.4
13LOC_Os11g14060:12011.t04316:unspliced-genomic expressed protein 32 5.5
14LOC_Os09g06890:12009.t00485:unspliced-genomic speckle-type P... 32 5.5
15LOC_Os08g32370:12008.t02982:unspliced-genomic mucin-associat... 32 5.5
16LOC_Os08g15460:12008.t01420:unspliced-genomic preprotein tra... 32 5.5
17LOC_Os02g55140:12002.t05090:unspliced-genomic leucine aminop... 32 5.5
18LOC_Os01g71070:12001.t06404:unspliced-genomic xylanase inhib... 32 5.5
19LOC_Os01g09800:12001.t00857:unspliced-genomic regulatory pro... 28 6.2
20LOC_Os07g29290:12007.t02619:unspliced-genomic expansin-like ... 29 6.6
21LOC_Os11g37510:12011.t03291:unspliced-genomic 50S ribosomal ... 29 7.0
22LOC_Os10g20770:12010.t01570:unspliced-genomic expressed protein 32 7.5
23LOC_Os07g13940:12007.t01258:unspliced-genomic cytokinin-N-gl... 32 7.5
24LOC_Os06g11330:12006.t01010:unspliced-genomic MADS-box trans... 32 7.5
25LOC_Os03g56200:12003.t04880:unspliced-genomic expressed protein 32 7.5
26LOC_Os01g46950:12001.t04145:unspliced-genomic apospory-assoc... 32 7.5
27LOC_Os06g18970:12006.t01720:unspliced-genomic expressed protein 25 8.6
28LOC_Os05g23870:12005.t02044:unspliced-genomic transposon pro... 27 8.9
29LOC_Os01g71250:12001.t06421:unspliced-genomic expressed protein 24 9.2
30LOC_Os11g10400:12011.t00930:unspliced-genomic F-box domain c... 26 9.3
31LOC_Os07g14370:12007.t01301:unspliced-genomic transposon pro... 29 9.4

>LOC_Os12g14080:12012.t01274:unspliced-genomic expressed protein|
          Length = 1825
 Score =  194 bits (419), Expect(3) = 7e-63
 Identities = 80/89 (89%), Positives = 86/89 (96%)
 Frame = +3 / +3

                                                                        
Query: 306  PVLSKEMKSTTVFGANILKEGSDPKIQPDSEYPDWLWHLVDKRPVLSELRRKDSKTLPYE 485
            PVLSKE+KSTTVFGANILKEGSDPK+QPDSEYP+WLWHL+DKRP+LSELRRKD+KTLPYE
Sbjct: 1329 PVLSKELKSTTVFGANILKEGSDPKLQPDSEYPEWLWHLLDKRPMLSELRRKDAKTLPYE 1508

                                         
Query: 486  DLKRFVKLDNRARIKENNALTAKN*SGES 572
            DLKRFVKL NRARIKE NALTAKN*SG S
Sbjct: 1509 DLKRFVKLVNRARIKEQNALTAKN*SGYS 1595



 Score = 62.0 bits (129), Expect(3) = 7e-63
 Identities = 24/43 (55%), Positives = 28/43 (65%)
 Frame = +2 / +2

                                                       
Query: 155  KYQPRNGNVLDTSIEVWNYSKRCSSIGWDKRLCSSGQGKEGRK 283
            K   RNGN ++ S E W   KRCSS  W KR+C+  QGKEGRK
Sbjct: 1175 KLPSRNGNGIEKSTETWCNPKRCSSSSWHKRICNCKQGKEGRK 1303



 Score = 23.5 bits (45), Expect(3) = 7e-63
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3 / +1

                                       
Query: 612  FCYKVY*LLFGNNVVTWKLLGLVQCSL 692
            F  ++ * +  NNVVTW +    +C L
Sbjct: 1630 FTVEIC*AVHCNNVVTWNIRIFKRCFL 1710



 Score =  151 bits (324), Expect(2) = 2e-49
 Identities = 63/89 (70%), Positives = 69/89 (77%)
 Frame = -1 / -3

                                                                        
Query: 572  RFS*SVLSSESIVFLDPRPVVQLDETLQVFIRQCLGIFPPQLAQHRTLVNQVPQPVRVLR 393
            R S SVL SE I+ LDP  V QLDE  QVFI + LGIFPPQL QHR LV QVPQP+RV R
Sbjct: 1595 RVSRSVLCSEGILLLDPSSVHQLDEPFQVFIGERLGIFPPQLTQHRALVEQVPQPLRVFR 1416

                                         
Query: 392  IWLDLRVRTLLQDICPKHSCTLHFFAEHR 306
            IWL+ R+R LL+DICPKH CTL FFAEHR
Sbjct: 1415 IWLEFRIRPLLEDICPKHCCTLKFFAEHR 1329



 Score = 65.2 bits (136), Expect(2) = 2e-49
 Identities = 27/55 (49%), Positives = 33/55 (60%)
 Frame = -1 / -3

                                                                   
Query: 323  FFAEHRFSISRTTFSALLSLGLSCKASYPNQLSYISWNNSTLQYSCPRHCHSWVD 159
            F     FS    T SALL L  +CK+SY N LS ISW+ +  QYS   HCHSW++
Sbjct: 1343 FAEHRGFSSIGRTLSALLCLACNCKSSYANYLSCISWDYTMFQYSSQCHCHSWME 1179



 Score =  134 bits (288), Expect(2) = 9e-40
 Identities = 59/98 (60%), Positives = 69/98 (70%)
 Frame = +2 / +2

                                                                        
Query: 308  CAQQRNEEYNCVWGKYPEGGF*PEDPTRF*VP*LAVAPG*QASCAERAAEERFQDTAL*R 487
            CAQQR  EYN VWGKYP+GG * E P RF*+P*+AVAP  QA  AE AAEER QD  L*R
Sbjct: 1331 CAQQRT*EYNSVWGKYPQGGV*SETPARF*IP*VAVAPARQAPYAE*AAEERCQDAPL*R 1510

                                                  
Query: 488  PEAFRQVGQPGADQGKQCSHC*ELIRRISSHVVVEVSI 601
            PE  RQ G+P +DQG +C HC ELI  +S   ++  S+
Sbjct: 1511 PETVRQAGEPSSDQGAECPHCKELIWILSGGSIICFSL 1624



 Score = 49.6 bits (102), Expect(2) = 9e-40
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +3 / +3

                                          
Query: 156  NINPGMAMSWTRVLKCGIIPRDVAQLVGIR 245
            + +PGMAM+  RVLK G+IPRD AQ+VGIR
Sbjct: 1176 SFHPGMAMALRRVLKHGVIPRDAAQVVGIR 1265



 Score =  125 bits (268), Expect(2) = 6e-36
 Identities = 60/93 (64%), Positives = 67/93 (72%)
 Frame = +1 / +1

                                                                        
Query: 295  LMLNLCSAKK*RVQLCLGQIS*RRVLTRRSNQILSTLTGCGTWLTSVLC*ASCGGKIPRH 474
            L+  LCSAK  RVQ CLGQIS RR L R S+QIL+TL+GCGT  TS LC* SCGGK+PR 
Sbjct: 1318 LLKPLCSAKNLRVQQCLGQISSRRGLIRNSSQILNTLSGCGTCSTSALC*VSCGGKMPRR 1497

                                             
Query: 475  CLMKT*SVSSSWTTGRGSRKTMLSLLRTDQENL 573
              MKT*+ SSSW T  GSR  M SL RTD + L
Sbjct: 1498 SPMKT*NGSSSW*TELGSRSRMPSLQRTDLDTL 1596



 Score =  119 bits (254), Expect(2) = 6e-36
 Identities = 57/89 (64%), Positives = 62/89 (69%)
 Frame = -3 / -2

                                                                        
Query: 573  EILLISS*Q*EHCFP*SAPGCPT*RNASGLHKAVSWNLSSAARSAQDACQPGATASQGTQ 394
            E + ISS Q* H  P*S  G P *R  SGLH+  SW+LSSAA SA  AC+ GATA+QG Q
Sbjct: 1596 ESIQISSLQ*GHSAP*SELGSPA*RTVSGLHRGASWHLSSAAHSA*GACRAGATATQGIQ 1417

                                         
Query: 393  NLVGSSGQNPPSGYLPQTQLYSSFLC*AQ 307
            NL G S Q PP GYLPQT LYS  LC*AQ
Sbjct: 1416 NLAGVSDQTPP*GYLPQTLLYS*VLC*AQ 1330



 Score = 52.4 bits (108), Expect(2) = 6e-36
 Identities = 24/41 (58%), Positives = 27/41 (65%)
 Frame = -3 / -2

                                                     
Query: 288  HLFRPSFPWPELQSLLSQPIELHLLE*FHTSILVSKTLPFL 166
            H FRPS P  +LQ LL Q +ELHLL   H S+L S  LPFL
Sbjct: 1308 HPFRPSLPCLQLQILLCQLLELHLLGLHHVSVLFSMPLPFL 1186



 Score = 46.0 bits (94), Expect(2) = 6e-36
 Identities = 25/48 (52%), Positives = 32/48 (66%)
 Frame = +1 / +1

                                                            
Query: 160  STQEWQCLGHEY*SVELFQEM*LNWLG*EALQLRPRERRAEKVVRLML 303
            S QEWQ    EY*++   QEM L  L *E LQL+ R+RRAE+V  ++L
Sbjct: 1180 SIQEWQWH*EEY*NMV*SQEMQLK*LA*EDLQLQARQRRAERVRPMLL 1323



 Score = 80.3 bits (169), Expect(3) = 2e-31
 Identities = 32/38 (84%), Positives = 33/38 (86%)
 Frame = -2 / -1

                                                  
Query: 418  CHSQSGYSESGWIFGSEPSFRIFAPNTVVLFISLLSTG 305
            CHS SGYSESGW FGS+PS RIFAPNTVVL  SLLSTG
Sbjct: 1441 CHSHSGYSESGWSFGSDPSLRIFAPNTVVLLSSLLSTG 1328



 Score = 57.4 bits (119), Expect(3) = 2e-31
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = -2 / -1

                                             
Query: 565  PDQFLAVRALFSLIRARLSNLTKRFRSS*GSVL 467
            PDQF AVRA  SLIRAR ++LT RFRSS*GSVL
Sbjct: 1588 PDQFFAVRAFCSLIRARFTSLTNRFRSS*GSVL 1490



 Score = 36.3 bits (73), Expect(3) = 2e-31
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = -2 / -1

                                      
Query: 241  IPTN*ATSLGIIPHFNTRVQDIAIPG 164
            +PT *A SLGI P F+T +  IAIPG
Sbjct: 1261 MPTT*AASLGITPCFSTLLNAIAIPG 1184



to top

>LOC_Os08g43180:12008.t04043:unspliced-genomic expressed protein|
          Length = 3397

 Score = 29.9 bits (59), Expect(2) = 0.24
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2 / +2

                          
Query: 251  CSSGQGKEGRKRWC 292
            CS+G+G+  R+RWC
Sbjct: 2177 CSTGRGRRWRRRWC 2218



 Score = 29.0 bits (57), Expect(2) = 0.24
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3 / +1

                                       
Query: 678  VQCSLCDQHAIFAMFFVRCNFCILQQM 758
            ++CS   Q  IFA F + C+  +L Q+
Sbjct: 3286 IECSWWQQAGIFACFKIFCSIAVLHQL 3366



to top

>LOC_Os08g43170:12008.t04042:unspliced-genomic hydroxymethylglutaryl-CoA synthase, putative, expressed|
          Length = 5499

 Score = 29.9 bits (59), Expect(2) = 0.36
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2 / -1

                          
Query: 251  CSSGQGKEGRKRWC 292
            CS+G+G+  R+RWC
Sbjct: 5244 CSTGRGRRWRRRWC 5203



 Score = 29.0 bits (57), Expect(2) = 0.36
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3 / -3

                                       
Query: 678  VQCSLCDQHAIFAMFFVRCNFCILQQM 758
            ++CS   Q  IFA F + C+  +L Q+
Sbjct: 4135 IECSWWQQAGIFACFKIFCSIAVLHQL 4055



to top

>LOC_Os11g07600:12011.t00651:unspliced-genomic ATPase, coupled to transmembrane movement of substances, putative,|
            expressed
          Length = 3737

 Score = 35.4 bits (71), Expect = 0.59
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = -3 / +2

                                                                        
Query: 531  P*SAPGCPT*RNASGLHKAVSWNLSSAARSAQDACQPGATASQGTQNLVGSSGQNPPSGY 352
            P*S+P C + R ++       W  S+  RS+  +C P ++ +  T      S + P +  
Sbjct: 3020 P*SSPTCSSPRGSASPSAPS*WTPSAPPRSSPSSCSPTSSPAASTSTTCRGSWRGPSTPP 3199

                        
Query: 351  LPQTQLYSSFLC 316
             P T    S  C
Sbjct: 3200 SPTTATGCSSPC 3235



to top

>LOC_Os06g17530:12006.t01625:unspliced-genomic PE-PGRS family protein, putative|
          Length = 1658

 Score = 34.1 bits (68), Expect = 1.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2 / +2

                                
Query: 233  GWDKRLCSSGQGKEGRKRWC 292
            GW++   ++G GK+G +RWC
Sbjct: 1520 GWERHQAAAGGGKDGGERWC 1579



to top

>LOC_Os02g03840:12002.t00283:unspliced-genomic expressed protein|
          Length = 12838

 Score = 34.1 bits (68), Expect = 1.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3 / -3

                                                        
Query: 606  LVFCYKVY*LLFGNNVVTWKLLGLVQCSLCDQHAIFAMFFVRCN 737
            L+FC+  +  +F NN + WK L +V+ S     +    FFV  N
Sbjct: 2366 LIFCFDFFICMFCNNFIFWKALFVVKISSIIFFSRIICFFVSWN 2235



to top

>LOC_Os11g43020:12011.t03832:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
          Length = 3704

 Score = 28.6 bits (56), Expect(2) = 1.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1 / -2

                            
Query: 466  PRHCLMKT*SVSSSWT 513
            PRHCL  T*  S +WT
Sbjct: 2242 PRHCLPTT*MASDTWT 2195



 Score = 22.6 bits (43), Expect(2) = 1.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2 / -3

                          
Query: 335  NCVWGKYPEGGF*P 376
            NC+  K+P  GF*P
Sbjct: 2388 NCLGPKHPVDGF*P 2347



to top

>LOC_Os08g43480:12008.t04073:unspliced-genomic zinc finger, C3HC4 type family protein, expressed|
          Length = 2684

 Score = 33.6 bits (67), Expect = 2.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1 / +2

                                          
Query: 362 LQDICPKHSCTLHFFAEHRFSISRTTFSALL 270
           L ++ P+H+ T   F  H FS+S TT S LL
Sbjct: 2   LLNVHPRHAATASLFLLHHFSLSPTTTSPLL 94



to top

>LOC_Os06g01400:12006.t00039:unspliced-genomic glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor,|
            putative, expressed
          Length = 10838

 Score = 33.6 bits (67), Expect = 2.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1 / +2

                                              
Query: 287  TFSALLSLGLSCKASYPNQLSYISWNNSTLQYSC 186
            TFS+ L+  L C  S+P+   YI  NN  + + C
Sbjct: 1757 TFSSSLASCLQCAISFPSSFYYIK*NNFVIYFCC 1858



to top

>LOC_Os08g30070:12008.t02760:unspliced-genomic expressed protein|
          Length = 5827

 Score = 31.8 bits (63), Expect(2) = 2.2
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1 / +3

                                   
Query: 19  RNSLLNFPVSVSPSPKRNPTPRPS 90
           R SL  FP S  PSP RN  P P+
Sbjct: 270 RRSLPRFPTSGCPSPPRNSAPPPT 341



 Score = 24.4 bits (47), Expect(2) = 2.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2 / +3

                               
Query: 242 KRLCSSGQGKEGRKRWCG*C 301
           +R   SG G+ GR+RW   C
Sbjct: 534 RRRPPSGAGRGGRRRWRSWC 593



to top

>LOC_Os11g34360:12011.t02989:unspliced-genomic TMEM87A protein, putative, expressed|
          Length = 4393

 Score = 32.7 bits (65), Expect = 4.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2 / +2

                                 
Query: 239  DKRLCSSGQGKEGRKRWCG*C 301
            D+R C  G+G +G+K WC *C
Sbjct: 3926 DRR*CRDGKG*QGQKWWCQ*C 3988



to top

>LOC_Os12g10490:12012.t00926:unspliced-genomic conserved hypothetical protein|
          Length = 1657

 Score = 29.9 bits (59), Expect(2) = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1 / +1

                                      
Query: 104  RERKVEGRGVGFRLGEGETETGKLSR 27
            R+R   G+    R GEGET TGK +R
Sbjct: 1474 RKRSEAGKREQLRRGEGETNTGKEAR 1551



 Score = 23.5 bits (45), Expect(2) = 4.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3 / +1

                                                
Query: 516 GCPT*RNASGLHKAVSWNLSSAARSAQDACQPGATAS 406
           G P     +  +  +++NL    R  QD C  GATA+
Sbjct: 334 GTPMVTRIASQNLQLNFNLDYWHRFLQDLCNFGATAA 444



to top

>LOC_Os11g14060:12011.t04316:unspliced-genomic expressed protein|
          Length = 1557

 Score = 32.2 bits (64), Expect = 5.5
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1 / -3

                                 
Query: 40  PVSVSPSPKRNPTPRPSTFLSR 105
           PVS SP  +R PTPRP    SR
Sbjct: 187 PVSSSPCLRRRPTPRPPPLASR 122



to top

>LOC_Os09g06890:12009.t00485:unspliced-genomic speckle-type POZ protein, putative|
          Length = 3651

 Score = 32.2 bits (64), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1 / +3

                                        
Query: 326  HFFAEHRFSISRTTFSALLSLGLSCKAS 243
            HF+ EH +SI    F   + LGLSC  S
Sbjct: 2202 HFYIEHYYSIHNFHFYIGIDLGLSCHCS 2285



to top

>LOC_Os08g32370:12008.t02982:unspliced-genomic mucin-associated surface protein, putative|
          Length = 5752

 Score = 32.2 bits (64), Expect = 5.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1 / -1

                               
Query: 40  PVSVSPSPKRNPTPRPSTFL 99
           P S+ P P+R P+PRP T+L
Sbjct: 733 PPSLPPLPRRQPSPRPPTWL 674



to top

>LOC_Os08g15460:12008.t01420:unspliced-genomic preprotein translocase secY subunit, chloroplast precursor, putative,|
            expressed
          Length = 9138

 Score = 32.2 bits (64), Expect = 5.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3 / +1

                                                       
Query: 630  *LLFGNNVVTWKLLGLVQCSLCDQHAIFAMFFVRCNFCILQQM 758
            *+LF + +  + L     CS    H+  + + +RCN C+LQ++
Sbjct: 4297 *ILFFHRIRIFSLCA*CICSCSSAHSCPSAWLIRCNGCLLQKL 4425



to top

>LOC_Os02g55140:12002.t05090:unspliced-genomic leucine aminopeptidase 3, chloroplast precursor, putative, expressed|
          Length = 3437

 Score = 32.2 bits (64), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2 / -2

                               
Query: 781  KARETCYSICCKIQKLHLT 725
            K  +TC S CC+I  LHLT
Sbjct: 2467 KCNDTCTSKCCQINNLHLT 2411



to top

>LOC_Os01g71070:12001.t06404:unspliced-genomic xylanase inhibitor TAXI-IV, putative, expressed|
          Length = 1484

 Score = 32.2 bits (64), Expect = 5.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1 / +2

                                       
Query: 10  PDERNSLLNFPVSVSPSPKRNPTPRPST 93
           P  R S    P S +PSP R  TP PST
Sbjct: 110 PSSRPSPRTAPPSSTPSPSRTATPSPST 193



to top

>LOC_Os01g09800:12001.t00857:unspliced-genomic regulatory protein NPR1, putative, expressed|
          Length = 4821

 Score = 27.6 bits (54), Expect(2) = 6.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2 / +2

                              
Query: 412  SQSGYSESGWIFGSEPSF 359
            S +GY  SGW FG  P F
Sbjct: 3392 SSNGYCSSGWNFGI*PGF 3445



 Score = 26.7 bits (52), Expect(2) = 6.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2 / +3

                             
Query: 691  RLHCTKPSNFQVTTLLP 641
            RLHCT PSN     L P
Sbjct: 2736 RLHCTTPSNIVTPKLQP 2786



to top

>LOC_Os07g29290:12007.t02619:unspliced-genomic expansin-like 3 precursor, putative, expressed|
          Length = 3704

 Score = 28.6 bits (56), Expect(2) = 6.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3 / +1

                          
Query: 822  FAFHVKNLRCKCHV 863
            F FH+K  RC+CH+
Sbjct: 1978 FEFHIKLDRCRCHI 2019



 Score = 25.4 bits (49), Expect(2) = 6.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3 / +1

                                             
Query: 660  WKLLGLVQCSLCDQHAIFAMFFVRCNFCILQQM 758
            W L  L  C L   H +F +FF    F    +M
Sbjct: 1291 WHLFQLCFCPLILSHLLFTLFFYYSFFARKDEM 1389



to top

>LOC_Os11g37510:12011.t03291:unspliced-genomic 50S ribosomal protein L4, putative, expressed|
          Length = 3947

 Score = 29.5 bits (58), Expect(2) = 7.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3 / -2

                                       
Query: 300  HQPHHLFRPSFPWPELQSLLSQPIELH 220
            HQ HH  +P  P+P   SLL   + LH
Sbjct: 1651 HQKHHHLKP*SPYPHCGSLLLGLLGLH 1571



 Score = 24.4 bits (47), Expect(2) = 7.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2 / -1

                                  
Query: 790  KPSKARETCYSICCKIQKLHLT 725
            +PSK  E     CC +   HLT
Sbjct: 1748 EPSKENEISGCTCCLLASCHLT 1683



to top

>LOC_Os10g20770:12010.t01570:unspliced-genomic expressed protein|
          Length = 2628

 Score = 31.8 bits (63), Expect = 7.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3 / -1

                                                    
Query: 456  SAARSAQDACQPGATASQGTQNLVGSSGQNPPSGYLPQTQ 337
            +AA    +   P A AS+  ++L   SG +PP G +PQ Q
Sbjct: 2223 AAAAELPNVRAPMAPASRVDEHLPPHSGHHPPHGVVPQLQ 2104



to top

>LOC_Os07g13940:12007.t01258:unspliced-genomic cytokinin-N-glucosyltransferase 1, putative, expressed|
          Length = 1476

 Score = 31.8 bits (63), Expect = 7.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2 / -3

                                        
Query: 209 YSKRCSSIGWDKRLCSSGQGKEGRKRWCG 295
           + +R  + GW +R    G  + GR RWCG
Sbjct: 211 WRRRGGARGWARR*APGGARRRGR*RWCG 125



to top

>LOC_Os06g11330:12006.t01010:unspliced-genomic MADS-box transcription factor 22, putative, expressed|
          Length = 10711

 Score = 31.8 bits (63), Expect = 7.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2 / +2

                                                
Query: 185  DTSIEVWNYSKRCSSIGWDKRLCSSGQGKEGRKRWC 292
            D  +E W  ++     GW  R+  SG+G++G +  C
Sbjct: 6224 DQEMEAW*LARNSMRHGWCSRMIRSGRGQQGPQGHC 6331



to top

>LOC_Os03g56200:12003.t04880:unspliced-genomic expressed protein|
          Length = 1614

 Score = 31.8 bits (63), Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1 / -2

                                   
Query: 10  PDERNSLLNFPVSVSPSPKRNPTP 81
           P   +S  + PVS SPSP R+P+P
Sbjct: 950 PSSSSSSSSSPVSTSPSPPRSPSP 879



to top

>LOC_Os01g46950:12001.t04145:unspliced-genomic apospory-associated protein C, putative, expressed|
          Length = 4186

 Score = 31.8 bits (63), Expect = 7.5
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -1 / -3

                                       
Query: 797  VYQAKQSTRNLLQHLLQDTEVTSYKEH 717
            VYQ   STR LLQH L        KEH
Sbjct: 1241 VYQRNFSTRTLLQHKLHQLSAKKKKEH 1161



to top

>LOC_Os06g18970:12006.t01720:unspliced-genomic expressed protein|
          Length = 6828

 Score = 25.4 bits (49), Expect(2) = 8.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2 / +2

                               
Query: 230 IGWDKRLCSSGQGKEGRKRW 289
           +GW +R   +  GKE   RW
Sbjct: 44  VGWRRRTAPASLGKEEAVRW 103



 Score = 23.1 bits (44), Expect(2) = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2 / +3

                                     
Query: 275 GRKRWCG*C*TCAQQRNEEYNCVWGK 352
           GR+R CG     A+   +E    WGK
Sbjct: 81  GRRRRCGGRSCAAEVGKKELRPTWGK 158



to top

>LOC_Os05g23870:12005.t02044:unspliced-genomic transposon protein, putative, Mutator sub-class|
          Length = 2110

 Score = 26.7 bits (52), Expect(3) = 8.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1 / -1

                       
Query: 359 QDICPKHSCTLH 324
           Q ICP H C LH
Sbjct: 160 QSICPHHQCLLH 125



 Score = 22.1 bits (42), Expect(3) = 8.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2 / -1

                           
Query: 712  KIACWSHRLHCTKPS 668
            +IAC+ H+L   KP+
Sbjct: 1102 EIACYDHQLQQPKPT 1058



 Score = 22.1 bits (42), Expect(3) = 8.9
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -1 / -2

                                 
Query: 656 HYIITKKQLINLVTKDKTICLL 591
           HY     +++N++ KD+ I ++
Sbjct: 345 HYTNINTRILNIICKDRYIIII 280



to top

>LOC_Os01g71250:12001.t06421:unspliced-genomic expressed protein|
          Length = 3106

 Score = 24.4 bits (47), Expect(2) = 9.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1 / +2

                          
Query: 46  SVSPSPKRNPTPRPS 90
           S +PSP  +PT RPS
Sbjct: 467 SSTPSPATSPTSRPS 511



 Score = 24.0 bits (46), Expect(2) = 9.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2 / +1

                                   
Query: 188 TSIEVWNYSKRCSSIGWDKRLCSS 259
           T+  +WNY++    IG+ + +C+S
Sbjct: 541 TNSVLWNYNEEKHRIGFLRDVCAS 612



to top

>LOC_Os11g10400:12011.t00930:unspliced-genomic F-box domain containing protein, expressed|
          Length = 2815

 Score = 26.3 bits (51), Expect(2) = 9.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1 / +2

                                        
Query: 269 SLGLSCKASYPNQLSYISWNNSTLQYSCP 183
           S G+SC  S     + +S N+S++  SCP
Sbjct: 464 SSGISCTTSCSAAGALLSTNSSSISPSCP 550



 Score = 22.1 bits (42), Expect(2) = 9.3
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3 / +2

                                                        
Query: 489 GLHKAVSWNLSSAARSAQDACQPGATASQGTQNLVGSSGQNPPSG 355
           G+ + VS N SSA+      C P  +   G  +   S     P+G
Sbjct: 302 GVCRMVSSNTSSASSRRMRPCGPACSRGAGATSGSPSRPCASPTG 436



to top

>LOC_Os07g14370:12007.t01301:unspliced-genomic transposon protein, putative, Mutator sub-class|
          Length = 2831

 Score = 28.6 bits (56), Expect(2) = 9.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3 / -2

                                                    
Query: 537 CFP*SAPGCPT*RNASGLHKAVSWNLSSAARSAQDACQPGA 415
           C   +A  C T*++A+  H+ V    +S + S   AC PGA
Sbjct: 715 CDSCTAGWCST*QHATCFHQKVVHGTAS*SSSTGVACTPGA 593



 Score = 24.4 bits (47), Expect(2) = 9.4
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1 / -3

                                              
Query: 347 PKHSCTLHFFAEHRFSISRTTFSALLSLGLSCKAS 243
           PK+      FA   F IS   F  LL L L C +S
Sbjct: 168 PKYLLKGLLFASKNFVISYCKFVLLL*LDLQCTSS 64


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 365,937,074
Number of extensions: 5818255
Number of successful extensions: 26337
Number of sequences better than 10.0: 31
Length of query: 310
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 261
Effective length of database: 52,856,264
Effective search space: 13795484904
Effective search space used: 13795484904
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
to top