>LOC_Os12g14080:12012.t01274:unspliced-genomic expressed protein|
Length = 1825
Score = 194 bits (419), Expect(3) = 7e-63
Identities = 80/89 (89%), Positives = 86/89 (96%)
Frame = +3 / +3
Query: 306 PVLSKEMKSTTVFGANILKEGSDPKIQPDSEYPDWLWHLVDKRPVLSELRRKDSKTLPYE 485
PVLSKE+KSTTVFGANILKEGSDPK+QPDSEYP+WLWHL+DKRP+LSELRRKD+KTLPYE
Sbjct: 1329 PVLSKELKSTTVFGANILKEGSDPKLQPDSEYPEWLWHLLDKRPMLSELRRKDAKTLPYE 1508
Query: 486 DLKRFVKLDNRARIKENNALTAKN*SGES 572
DLKRFVKL NRARIKE NALTAKN*SG S
Sbjct: 1509 DLKRFVKLVNRARIKEQNALTAKN*SGYS 1595
Score = 62.0 bits (129), Expect(3) = 7e-63
Identities = 24/43 (55%), Positives = 28/43 (65%)
Frame = +2 / +2
Query: 155 KYQPRNGNVLDTSIEVWNYSKRCSSIGWDKRLCSSGQGKEGRK 283
K RNGN ++ S E W KRCSS W KR+C+ QGKEGRK
Sbjct: 1175 KLPSRNGNGIEKSTETWCNPKRCSSSSWHKRICNCKQGKEGRK 1303
Score = 23.5 bits (45), Expect(3) = 7e-63
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3 / +1
Query: 612 FCYKVY*LLFGNNVVTWKLLGLVQCSL 692
F ++ * + NNVVTW + +C L
Sbjct: 1630 FTVEIC*AVHCNNVVTWNIRIFKRCFL 1710
Score = 151 bits (324), Expect(2) = 2e-49
Identities = 63/89 (70%), Positives = 69/89 (77%)
Frame = -1 / -3
Query: 572 RFS*SVLSSESIVFLDPRPVVQLDETLQVFIRQCLGIFPPQLAQHRTLVNQVPQPVRVLR 393
R S SVL SE I+ LDP V QLDE QVFI + LGIFPPQL QHR LV QVPQP+RV R
Sbjct: 1595 RVSRSVLCSEGILLLDPSSVHQLDEPFQVFIGERLGIFPPQLTQHRALVEQVPQPLRVFR 1416
Query: 392 IWLDLRVRTLLQDICPKHSCTLHFFAEHR 306
IWL+ R+R LL+DICPKH CTL FFAEHR
Sbjct: 1415 IWLEFRIRPLLEDICPKHCCTLKFFAEHR 1329
Score = 65.2 bits (136), Expect(2) = 2e-49
Identities = 27/55 (49%), Positives = 33/55 (60%)
Frame = -1 / -3
Query: 323 FFAEHRFSISRTTFSALLSLGLSCKASYPNQLSYISWNNSTLQYSCPRHCHSWVD 159
F FS T SALL L +CK+SY N LS ISW+ + QYS HCHSW++
Sbjct: 1343 FAEHRGFSSIGRTLSALLCLACNCKSSYANYLSCISWDYTMFQYSSQCHCHSWME 1179
Score = 134 bits (288), Expect(2) = 9e-40
Identities = 59/98 (60%), Positives = 69/98 (70%)
Frame = +2 / +2
Query: 308 CAQQRNEEYNCVWGKYPEGGF*PEDPTRF*VP*LAVAPG*QASCAERAAEERFQDTAL*R 487
CAQQR EYN VWGKYP+GG * E P RF*+P*+AVAP QA AE AAEER QD L*R
Sbjct: 1331 CAQQRT*EYNSVWGKYPQGGV*SETPARF*IP*VAVAPARQAPYAE*AAEERCQDAPL*R 1510
Query: 488 PEAFRQVGQPGADQGKQCSHC*ELIRRISSHVVVEVSI 601
PE RQ G+P +DQG +C HC ELI +S ++ S+
Sbjct: 1511 PETVRQAGEPSSDQGAECPHCKELIWILSGGSIICFSL 1624
Score = 49.6 bits (102), Expect(2) = 9e-40
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +3 / +3
Query: 156 NINPGMAMSWTRVLKCGIIPRDVAQLVGIR 245
+ +PGMAM+ RVLK G+IPRD AQ+VGIR
Sbjct: 1176 SFHPGMAMALRRVLKHGVIPRDAAQVVGIR 1265
Score = 125 bits (268), Expect(2) = 6e-36
Identities = 60/93 (64%), Positives = 67/93 (72%)
Frame = +1 / +1
Query: 295 LMLNLCSAKK*RVQLCLGQIS*RRVLTRRSNQILSTLTGCGTWLTSVLC*ASCGGKIPRH 474
L+ LCSAK RVQ CLGQIS RR L R S+QIL+TL+GCGT TS LC* SCGGK+PR
Sbjct: 1318 LLKPLCSAKNLRVQQCLGQISSRRGLIRNSSQILNTLSGCGTCSTSALC*VSCGGKMPRR 1497
Query: 475 CLMKT*SVSSSWTTGRGSRKTMLSLLRTDQENL 573
MKT*+ SSSW T GSR M SL RTD + L
Sbjct: 1498 SPMKT*NGSSSW*TELGSRSRMPSLQRTDLDTL 1596
Score = 119 bits (254), Expect(2) = 6e-36
Identities = 57/89 (64%), Positives = 62/89 (69%)
Frame = -3 / -2
Query: 573 EILLISS*Q*EHCFP*SAPGCPT*RNASGLHKAVSWNLSSAARSAQDACQPGATASQGTQ 394
E + ISS Q* H P*S G P *R SGLH+ SW+LSSAA SA AC+ GATA+QG Q
Sbjct: 1596 ESIQISSLQ*GHSAP*SELGSPA*RTVSGLHRGASWHLSSAAHSA*GACRAGATATQGIQ 1417
Query: 393 NLVGSSGQNPPSGYLPQTQLYSSFLC*AQ 307
NL G S Q PP GYLPQT LYS LC*AQ
Sbjct: 1416 NLAGVSDQTPP*GYLPQTLLYS*VLC*AQ 1330
Score = 52.4 bits (108), Expect(2) = 6e-36
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -3 / -2
Query: 288 HLFRPSFPWPELQSLLSQPIELHLLE*FHTSILVSKTLPFL 166
H FRPS P +LQ LL Q +ELHLL H S+L S LPFL
Sbjct: 1308 HPFRPSLPCLQLQILLCQLLELHLLGLHHVSVLFSMPLPFL 1186
Score = 46.0 bits (94), Expect(2) = 6e-36
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +1 / +1
Query: 160 STQEWQCLGHEY*SVELFQEM*LNWLG*EALQLRPRERRAEKVVRLML 303
S QEWQ EY*++ QEM L L *E LQL+ R+RRAE+V ++L
Sbjct: 1180 SIQEWQWH*EEY*NMV*SQEMQLK*LA*EDLQLQARQRRAERVRPMLL 1323
Score = 80.3 bits (169), Expect(3) = 2e-31
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = -2 / -1
Query: 418 CHSQSGYSESGWIFGSEPSFRIFAPNTVVLFISLLSTG 305
CHS SGYSESGW FGS+PS RIFAPNTVVL SLLSTG
Sbjct: 1441 CHSHSGYSESGWSFGSDPSLRIFAPNTVVLLSSLLSTG 1328
Score = 57.4 bits (119), Expect(3) = 2e-31
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = -2 / -1
Query: 565 PDQFLAVRALFSLIRARLSNLTKRFRSS*GSVL 467
PDQF AVRA SLIRAR ++LT RFRSS*GSVL
Sbjct: 1588 PDQFFAVRAFCSLIRARFTSLTNRFRSS*GSVL 1490
Score = 36.3 bits (73), Expect(3) = 2e-31
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = -2 / -1
Query: 241 IPTN*ATSLGIIPHFNTRVQDIAIPG 164
+PT *A SLGI P F+T + IAIPG
Sbjct: 1261 MPTT*AASLGITPCFSTLLNAIAIPG 1184
>LOC_Os08g43170:12008.t04042:unspliced-genomic hydroxymethylglutaryl-CoA synthase, putative, expressed|
Length = 5499
Score = 29.9 bits (59), Expect(2) = 0.36
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2 / -1
Query: 251 CSSGQGKEGRKRWC 292
CS+G+G+ R+RWC
Sbjct: 5244 CSTGRGRRWRRRWC 5203
Score = 29.0 bits (57), Expect(2) = 0.36
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3 / -3
Query: 678 VQCSLCDQHAIFAMFFVRCNFCILQQM 758
++CS Q IFA F + C+ +L Q+
Sbjct: 4135 IECSWWQQAGIFACFKIFCSIAVLHQL 4055
>LOC_Os11g43020:12011.t03832:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
Length = 3704
Score = 28.6 bits (56), Expect(2) = 1.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1 / -2
Query: 466 PRHCLMKT*SVSSSWT 513
PRHCL T* S +WT
Sbjct: 2242 PRHCLPTT*MASDTWT 2195
Score = 22.6 bits (43), Expect(2) = 1.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2 / -3
Query: 335 NCVWGKYPEGGF*P 376
NC+ K+P GF*P
Sbjct: 2388 NCLGPKHPVDGF*P 2347
>LOC_Os01g09800:12001.t00857:unspliced-genomic regulatory protein NPR1, putative, expressed|
Length = 4821
Score = 27.6 bits (54), Expect(2) = 6.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2 / +2
Query: 412 SQSGYSESGWIFGSEPSF 359
S +GY SGW FG P F
Sbjct: 3392 SSNGYCSSGWNFGI*PGF 3445
Score = 26.7 bits (52), Expect(2) = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2 / +3
Query: 691 RLHCTKPSNFQVTTLLP 641
RLHCT PSN L P
Sbjct: 2736 RLHCTTPSNIVTPKLQP 2786
>LOC_Os07g29290:12007.t02619:unspliced-genomic expansin-like 3 precursor, putative, expressed|
Length = 3704
Score = 28.6 bits (56), Expect(2) = 6.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3 / +1
Query: 822 FAFHVKNLRCKCHV 863
F FH+K RC+CH+
Sbjct: 1978 FEFHIKLDRCRCHI 2019
Score = 25.4 bits (49), Expect(2) = 6.6
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3 / +1
Query: 660 WKLLGLVQCSLCDQHAIFAMFFVRCNFCILQQM 758
W L L C L H +F +FF F +M
Sbjct: 1291 WHLFQLCFCPLILSHLLFTLFFYYSFFARKDEM 1389
>LOC_Os11g37510:12011.t03291:unspliced-genomic 50S ribosomal protein L4, putative, expressed|
Length = 3947
Score = 29.5 bits (58), Expect(2) = 7.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3 / -2
Query: 300 HQPHHLFRPSFPWPELQSLLSQPIELH 220
HQ HH +P P+P SLL + LH
Sbjct: 1651 HQKHHHLKP*SPYPHCGSLLLGLLGLH 1571
Score = 24.4 bits (47), Expect(2) = 7.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -2 / -1
Query: 790 KPSKARETCYSICCKIQKLHLT 725
+PSK E CC + HLT
Sbjct: 1748 EPSKENEISGCTCCLLASCHLT 1683
>LOC_Os05g23870:12005.t02044:unspliced-genomic transposon protein, putative, Mutator sub-class|
Length = 2110
Score = 26.7 bits (52), Expect(3) = 8.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1 / -1
Query: 359 QDICPKHSCTLH 324
Q ICP H C LH
Sbjct: 160 QSICPHHQCLLH 125
Score = 22.1 bits (42), Expect(3) = 8.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2 / -1
Query: 712 KIACWSHRLHCTKPS 668
+IAC+ H+L KP+
Sbjct: 1102 EIACYDHQLQQPKPT 1058
Score = 22.1 bits (42), Expect(3) = 8.9
Identities = 6/22 (27%), Positives = 14/22 (63%)
Frame = -1 / -2
Query: 656 HYIITKKQLINLVTKDKTICLL 591
HY +++N++ KD+ I ++
Sbjct: 345 HYTNINTRILNIICKDRYIIII 280
>LOC_Os07g14370:12007.t01301:unspliced-genomic transposon protein, putative, Mutator sub-class|
Length = 2831
Score = 28.6 bits (56), Expect(2) = 9.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3 / -2
Query: 537 CFP*SAPGCPT*RNASGLHKAVSWNLSSAARSAQDACQPGA 415
C +A C T*++A+ H+ V +S + S AC PGA
Sbjct: 715 CDSCTAGWCST*QHATCFHQKVVHGTAS*SSSTGVACTPGA 593
Score = 24.4 bits (47), Expect(2) = 9.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1 / -3
Query: 347 PKHSCTLHFFAEHRFSISRTTFSALLSLGLSCKAS 243
PK+ FA F IS F LL L L C +S
Sbjct: 168 PKYLLKGLLFASKNFVISYCKFVLLL*LDLQCTSS 64
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 365,937,074
Number of extensions: 5818255
Number of successful extensions: 26337
Number of sequences better than 10.0: 31
Length of query: 310
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 261
Effective length of database: 52,856,264
Effective search space: 13795484904
Effective search space used: 13795484904
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)