>P36532:RM37_YEAST 54S ribosomal protein L37, mitochondrial precursor - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 105
 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 25/71 (35%), Positives = 37/71 (52%)
 Frame = +3

Query: 336 TVFGANILKEGSDPKIQPDSEYPDWLWHLVDKRPVLSELRRKDSKTLPYEDLKRFVKLDN 515
           T    NI K G D     D EYP+WLW ++D   V+ E   +D +       ++ ++  N
Sbjct: 34  TSLNLNIWKSGKDAVALEDKEYPNWLWSVLDSDHVV-EHAAEDPEGQALLKRRKNIRKAN 92

Query: 516 RARIKENNALT 548
           R RIK+NN L+
Sbjct: 93  RQRIKQNNFLS 103

>Q3MHJ5:RM54_BOVIN 39S ribosomal protein 54, mitochondrial precursor - Bos taurus|
           (Bovine)
          Length = 138

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 25/69 (36%), Positives = 36/69 (52%)
 Frame = +3

Query: 330 STTVFGANILKEGSDPKIQPDSEYPDWLWHLVDKRPVLSELRRKDSKTLPYEDLKRFVKL 509
           +T   G NI KEG D  ++PDSEYP+WL+ +    P   +L   D +T  Y  L R   +
Sbjct: 69  TTHPMGVNIYKEGQDVVLKPDSEYPEWLFQMNVGPP--KKLEELDPETREYWRLLRKHNI 126

Query: 510 DNRARIKEN 536
               R+ +N
Sbjct: 127 WRHNRLSKN 135

>Q6P161:RM54_HUMAN 39S ribosomal protein 54, mitochondrial precursor - Homo sapiens|
           (Human)
          Length = 138

 Score = 40.8 bits (94), Expect = 0.008
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 330 STTVFGANILKEGSDPKIQPDSEYPDWLWHL 422
           +T   G NI KEG D  ++PD+EYP+WL+ +
Sbjct: 69  TTYAMGVNIYKEGQDVPLKPDAEYPEWLFEM 99

>Q1LXI5:RM54_DANRE 39S ribosomal protein 54, mitochondrial precursor - Danio rerio|
           (Zebrafish) (Brachydanio rerio)
          Length = 135

 Score = 40.8 bits (94), Expect = 0.008
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 333 TTVFGANILKEGSDPKIQPDSEYPDWLWHL 422
           T   G N+ K+G DP I+P  EYP+WL+ L
Sbjct: 67  TYAVGVNVFKQGEDPTIKPKDEYPEWLFQL 96

>Q9CPW3:RM54_MOUSE 39S ribosomal protein 54, mitochondrial precursor - Mus musculus|
           (Mouse)
          Length = 135

 Score = 38.5 bits (88), Expect = 0.039
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +3

Query: 330 STTVFGANILKEGSDPKIQPDSEYPDWLWHLVDKRPVLSELRRKDSKTLPYEDLKRFVKL 509
           +T   G NI KEG D  ++ DSEYP WL+ +    P   +L   + ++  Y  L R   +
Sbjct: 66  TTHAMGVNIYKEGQDVALKADSEYPTWLFQVNLGPP--KKLEELEPESREYWRLLRKQNI 123

Query: 510 DNRARIKENNAL 545
               R+ +N  L
Sbjct: 124 WRHNRLSKNKKL 135

>P43632:KI2S4_HUMAN Killer cell immunoglobulin-like receptor 2DS4 precursor - Homo|
           sapiens (Human)
          Length = 304

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
 Frame = -1

Query: 497 TLQVFIRQCLGIFPPQLAQHRTLVNQVP------------QPVRVLRIWLDLRVRTLLQD 354
           +L V I  C+G F  Q A  +  V++ P            +   +L+ W D+     L  
Sbjct: 2   SLMVIIMACVGFFLLQGAWPQEGVHRKPSFLALPGHLVKSEETVILQCWSDVMFEHFLLH 61

Query: 353 ICPKHSCTLHFFAEHRFSISRTTFS 279
              K + TLH   EH   +S+  FS
Sbjct: 62  REGKFNNTLHLIGEHHDGVSKANFS 86

>P43631:KI2S2_HUMAN Killer cell immunoglobulin-like receptor 2DS2 precursor - Homo|
           sapiens (Human)
          Length = 304

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
 Frame = -1

Query: 497 TLQVFIRQCLGIFPPQLAQHRTLVNQVP------------QPVRVLRIWLDLRVRTLLQD 354
           +L V    C+G F  Q A     V++ P            +   +L+ W D+R    L  
Sbjct: 2   SLMVVSMACVGFFLLQGAWPHEGVHRKPSLLAHPGPLVKSEETVILQCWSDVRFEHFLLH 61

Query: 353 ICPKHSCTLHFFAEHRFSISRTTFS 279
              K+  TLH   EH   +S+  FS
Sbjct: 62  REGKYKDTLHLIGEHHDGVSKANFS 86

>P77329:HYFG_ECOLI Hydrogenase-4 component G - Escherichia coli|
          Length = 555

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = +3

Query: 306 PVLSKEMKSTTVFGANILKEGSDPKIQPDSEYPDWLWHLVDKRPVLSELRRKDSKTLPYE 485
           PVL   ++  TV  A ++    DP             +    R  L ++R++ SKT+PY+
Sbjct: 493 PVLRYMLRGNTVSDAPLIIGSLDP------------CYSCTDRVTLVDVRKRQSKTVPYK 540

Query: 486 DLKRFVKLDNRARIK 530
           +++R+    NR+ +K
Sbjct: 541 EIERYGIDRNRSPLK 555

>Q61545:EWS_MOUSE RNA-binding protein EWS - Mus musculus (Mouse)|
          Length = 655

 Score = 30.8 bits (68), Expect = 8.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 426 QPGATASQGTQNLVGSSGQNPPSGYLPQTQLYS 328
           QP +   Q +     S GQ PP+ Y PQT  YS
Sbjct: 216 QPSSYGQQSSYGQQSSYGQQPPTSYPPQTGSYS 248

>Q01844:EWS_HUMAN RNA-binding protein EWS - Homo sapiens (Human)|
          Length = 656

 Score = 30.8 bits (68), Expect = 8.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 426 QPGATASQGTQNLVGSSGQNPPSGYLPQTQLYS 328
           QP +   Q +     S GQ PP+ Y PQT  YS
Sbjct: 216 QPSSYGQQSSYGQQSSYGQQPPTSYPPQTGSYS 248

>Q8N0Z3:CCD52_HUMAN Coiled-coil domain-containing protein 52 - Homo sapiens (Human)|
          Length = 855

 Score = 30.8 bits (68), Expect = 8.1
 Identities = 21/87 (24%), Positives = 43/87 (49%)
 Frame = -1

Query: 668 QLPSHYIITKKQLINLVTKDKTICLLQPLHEMRFS*SVLSSESIVFLDPRPVVQLDETLQ 489
           +L  + + T +QLI+L    K   ++    E++ S S  +   ++    RPVV  + ++ 
Sbjct: 431 RLQQYMVTTDEQLISLTHAIKNCPVINNRQEIQASESGATGRRVMDSPERPVVNANVSVP 490

Query: 488 VFIRQCLGIFPPQLAQHRTLVNQVPQP 408
           +  R+ +  FP +  +    ++QVP P
Sbjct: 491 LMFREEVAEFPQE--ELPVKLSQVPDP 515


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 153,156,176
Number of extensions: 3139160
Number of successful extensions: 8505
Number of sequences better than 10.0: 11
Number of HSP's gapped: 8479
Number of HSP's successfully gapped: 11
Length of query: 310
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 197
Effective length of database: 69,691,104
Effective search space: 13729147488
Effective search space used: 13729147488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)