ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf16j11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR855238.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0136O08-OSIGBa0153H12, complete sequence Length = 148322 Score = 79.8 bits (40), Expect = 3e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||| ||||| ||||||||||||| || ||| ||||||||||||||||||||| ||||| Sbjct: 76324 tcctcgtccgcctcccgcccgacgaccccgcctgcctcctccgcgcctccctcgcctgca 76383 Query: 226 agtcctgg 233 || ||||| Sbjct: 76384 aggcctgg 76391 Score = 50.1 bits (25), Expect = 0.025 Identities = 28/29 (96%) Strand = Plus / Plus Query: 412 tcgactgccgccacgggcgcgccctcttc 440 |||||||||||||||| |||||||||||| Sbjct: 76582 tcgactgccgccacggccgcgccctcttc 76610
>ref|NM_001065311.1| Oryza sativa (japonica cultivar-group) Os07g0120200 (Os07g0120200) mRNA, complete cds Length = 1125 Score = 79.8 bits (40), Expect = 3e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||| Sbjct: 44 tcctcctccgcatcccgccggacgagcccgcatccctcgtccgcgcctccctcgtctgca 103 Query: 226 agtcctgg 233 || ||||| Sbjct: 104 agccctgg 111
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 79.8 bits (40), Expect = 3e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||| Sbjct: 1083382 tcctcctccgcatcccgccggacgagcccgcatccctcgtccgcgcctccctcgtctgca 1083323 Query: 226 agtcctgg 233 || ||||| Sbjct: 1083322 agccctgg 1083315 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||||||||||| || || || || | |||| ||| ||||||||||||||||| Sbjct: 1093711 tcctcctccgcatcccgccggatgaacccgcgcacctcgtccacgcctccctcgtctgca 1093652 Query: 226 agtcctgg 233 || ||||| Sbjct: 1093651 agccctgg 1093644 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||| ||||| |||| ||||||||||||| |||||| ||||||| |||||||| |||| Sbjct: 1063709 tcctcgtccgcctccctcccgacgagccggagcgcctcgtccgcgcgtccctcgtatgca 1063650 Query: 226 ag 227 || Sbjct: 1063649 ag 1063648 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||| ||||||||| ||||| || || |||| ||||||||||||||||||||| Sbjct: 1088131 tcctcctccacatcccgccggacgatcccgcgtccctcgtccgcgcctccctcgtctgca 1088072 Query: 226 ag 227 || Sbjct: 1088071 ag 1088070 Score = 52.0 bits (26), Expect = 0.006 Identities = 29/30 (96%) Strand = Plus / Plus Query: 412 tcgactgccgccacgggcgcgccctcttcc 441 |||||||||||||||| ||||||||||||| Sbjct: 1179590 tcgactgccgccacggccgcgccctcttcc 1179619 Score = 50.1 bits (25), Expect = 0.025 Identities = 31/33 (93%) Strand = Plus / Plus Query: 409 ccatcgactgccgccacgggcgcgccctcttcc 441 |||| |||||||||||||| ||||||||||||| Sbjct: 1175974 ccatggactgccgccacggccgcgccctcttcc 1176006 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 412 tcgactgccgccacgggcgcgccctc 437 |||||||||||||||| ||||||||| Sbjct: 1184330 tcgactgccgccacggccgcgccctc 1184305 Score = 44.1 bits (22), Expect = 1.5 Identities = 52/62 (83%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||| ||| ||| |||||||| | | |||| ||||||| || |||||||||| Sbjct: 13462032 tcctcctccgcctccggccggacgagcccgagcacctcttccgcgcgtcactcgtctgca 13461973 Query: 226 ag 227 || Sbjct: 13461972 ag 13461971
>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022B05 Length = 151317 Score = 79.8 bits (40), Expect = 3e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||| Sbjct: 80970 tcctcctccgcatcccgccggacgagcccgcatccctcgtccgcgcctccctcgtctgca 80911 Query: 226 agtcctgg 233 || ||||| Sbjct: 80910 agccctgg 80903 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||||||||||| || || || || | |||| ||| ||||||||||||||||| Sbjct: 91299 tcctcctccgcatcccgccggatgaacccgcgcacctcgtccacgcctccctcgtctgca 91240 Query: 226 agtcctgg 233 || ||||| Sbjct: 91239 agccctgg 91232 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||| ||||| |||| ||||||||||||| |||||| ||||||| |||||||| |||| Sbjct: 61297 tcctcgtccgcctccctcccgacgagccggagcgcctcgtccgcgcgtccctcgtatgca 61238 Query: 226 ag 227 || Sbjct: 61237 ag 61236 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||| ||||||||| ||||| || || |||| ||||||||||||||||||||| Sbjct: 85719 tcctcctccacatcccgccggacgatcccgcgtccctcgtccgcgcctccctcgtctgca 85660 Query: 226 ag 227 || Sbjct: 85659 ag 85658
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 75.8 bits (38), Expect = 4e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||| ||||| ||||||||||||| || ||| ||||||||||||||||||||| ||||| Sbjct: 4529327 tcctcgtccgcctcccgcccgacgaccccgcctgcctcctccgcgcctccctcgcctgca 4529386 Query: 226 ag 227 || Sbjct: 4529387 ag 4529388 Score = 50.1 bits (25), Expect = 0.025 Identities = 28/29 (96%) Strand = Plus / Plus Query: 412 tcgactgccgccacgggcgcgccctcttc 440 |||||||||||||||| |||||||||||| Sbjct: 4529585 tcgactgccgccacggccgcgccctcttc 4529613 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 cgcgcctccctcgtctgcaag 227 ||||||||||||||||||||| Sbjct: 13617990 cgcgcctccctcgtctgcaag 13618010
>emb|AL662949.4|OSJN00144 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I21, complete sequence Length = 127162 Score = 75.8 bits (38), Expect = 4e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||| ||||| ||||||||||||| || ||| ||||||||||||||||||||| ||||| Sbjct: 88151 tcctcgtccgcctcccgcccgacgaccccgcctgcctcctccgcgcctccctcgcctgca 88092 Query: 226 ag 227 || Sbjct: 88091 ag 88090 Score = 50.1 bits (25), Expect = 0.025 Identities = 28/29 (96%) Strand = Plus / Minus Query: 412 tcgactgccgccacgggcgcgccctcttc 440 |||||||||||||||| |||||||||||| Sbjct: 87893 tcgactgccgccacggccgcgccctcttc 87865
>ref|NM_001065315.1| Oryza sativa (japonica cultivar-group) Os07g0120600 (Os07g0120600) mRNA, complete cds Length = 951 Score = 63.9 bits (32), Expect = 2e-06 Identities = 59/68 (86%) Strand = Plus / Plus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||||||||||| || || || || | |||| ||| ||||||||||||||||| Sbjct: 44 tcctcctccgcatcccgccggatgaacccgcgcacctcgtccacgcctccctcgtctgca 103 Query: 226 agtcctgg 233 || ||||| Sbjct: 104 agccctgg 111
>ref|NM_001049865.1| Oryza sativa (japonica cultivar-group) Os01g0557400 (Os01g0557400) mRNA, partial cds Length = 1678 Score = 63.9 bits (32), Expect = 2e-06 Identities = 62/72 (86%) Strand = Plus / Plus Query: 156 gtcgaagaggtcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctcc 215 ||||| ||| ||||||||||| |||| ||||||||||| ||| ||||| |||||||||| Sbjct: 107 gtcgacgagatcctcctccgcctcccccccgacgagcccgcctgcctcgcccgcgcctcc 166 Query: 216 ctcgtctgcaag 227 |||||||||| Sbjct: 167 gccgtctgcaag 178
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 63.9 bits (32), Expect = 2e-06 Identities = 62/72 (86%) Strand = Plus / Plus Query: 156 gtcgaagaggtcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctcc 215 ||||| ||| ||||||||||| |||| ||||||||||| ||| ||||| |||||||||| Sbjct: 21064723 gtcgacgagatcctcctccgcctcccccccgacgagcccgcctgcctcgcccgcgcctcc 21064782 Query: 216 ctcgtctgcaag 227 |||||||||| Sbjct: 21064783 gccgtctgcaag 21064794 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1331 tttgtgctatctatctatctg 1351 ||||||||||||||||||||| Sbjct: 24443082 tttgtgctatctatctatctg 24443102
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 63.9 bits (32), Expect = 2e-06 Identities = 62/72 (86%) Strand = Plus / Plus Query: 156 gtcgaagaggtcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctcc 215 ||||| ||| ||||||||||| |||| ||||||||||| ||| ||||| |||||||||| Sbjct: 32268 gtcgacgagatcctcctccgcctcccccccgacgagcccgcctgcctcgcccgcgcctcc 32327 Query: 216 ctcgtctgcaag 227 |||||||||| Sbjct: 32328 gccgtctgcaag 32339
>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1014_G12 Length = 158830 Score = 63.9 bits (32), Expect = 2e-06 Identities = 62/72 (86%) Strand = Plus / Plus Query: 156 gtcgaagaggtcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctcc 215 ||||| ||| ||||||||||| |||| ||||||||||| ||| ||||| |||||||||| Sbjct: 127925 gtcgacgagatcctcctccgcctcccccccgacgagcccgcctgcctcgcccgcgcctcc 127984 Query: 216 ctcgtctgcaag 227 |||||||||| Sbjct: 127985 gccgtctgcaag 127996
>dbj|AK107049.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C12, full insert sequence Length = 1677 Score = 63.9 bits (32), Expect = 2e-06 Identities = 62/72 (86%) Strand = Plus / Plus Query: 156 gtcgaagaggtcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctcc 215 ||||| ||| ||||||||||| |||| ||||||||||| ||| ||||| |||||||||| Sbjct: 107 gtcgacgagatcctcctccgcctcccccccgacgagcccgcctgcctcgcccgcgcctcc 166 Query: 216 ctcgtctgcaag 227 |||||||||| Sbjct: 167 gccgtctgcaag 178
>ref|NM_001065313.1| Oryza sativa (japonica cultivar-group) Os07g0120400 (Os07g0120400) mRNA, complete cds Length = 1377 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||| ||||||||| ||||| || || |||| ||||||||||||||||||||| Sbjct: 80 tcctcctccacatcccgccggacgatcccgcgtccctcgtccgcgcctccctcgtctgca 139 Query: 226 ag 227 || Sbjct: 140 ag 141
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||||||||||| ||||| || | |||||| ||||||||||| |||||||| Sbjct: 23574993 tcctcctccgcatcccgccggacgaccccacgcgcctcgtccgcgcctccgccgtctgca 23574934 Query: 226 ag 227 || Sbjct: 23574933 ag 23574932
>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481H08 Length = 146841 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||||||||||| ||||| || | |||||| ||||||||||| |||||||| Sbjct: 55957 tcctcctccgcatcccgccggacgaccccacgcgcctcgtccgcgcctccgccgtctgca 55898 Query: 226 ag 227 || Sbjct: 55897 ag 55896
>dbj|AK107254.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-G06, full insert sequence Length = 1377 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||| ||||||||| ||||| || || |||| ||||||||||||||||||||| Sbjct: 80 tcctcctccacatcccgccggacgatcccgcgtccctcgtccgcgcctccctcgtctgca 139 Query: 226 ag 227 || Sbjct: 140 ag 141
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 58.0 bits (29), Expect = 1e-04 Identities = 29/29 (100%) Strand = Plus / Minus Query: 205 tccgcgcctccctcgtctgcaagtcctgg 233 ||||||||||||||||||||||||||||| Sbjct: 11336627 tccgcgcctccctcgtctgcaagtcctgg 11336599
>dbj|AP005414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073G17 Length = 162391 Score = 58.0 bits (29), Expect = 1e-04 Identities = 29/29 (100%) Strand = Plus / Minus Query: 205 tccgcgcctccctcgtctgcaagtcctgg 233 ||||||||||||||||||||||||||||| Sbjct: 139442 tccgcgcctccctcgtctgcaagtcctgg 139414
>dbj|AP004123.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1654_A02 Length = 128520 Score = 58.0 bits (29), Expect = 1e-04 Identities = 29/29 (100%) Strand = Plus / Minus Query: 205 tccgcgcctccctcgtctgcaagtcctgg 233 ||||||||||||||||||||||||||||| Sbjct: 6099 tccgcgcctccctcgtctgcaagtcctgg 6071
>ref|NM_001070604.1| Oryza sativa (japonica cultivar-group) Os10g0123200 (Os10g0123200) mRNA, complete cds Length = 1686 Score = 56.0 bits (28), Expect = 4e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 |||||||||||||||||||||||||||| Sbjct: 251 cctcctccgcgcctccctcgtctgcaag 278
>gb|AC135417.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1314_A05, complete sequence Length = 109853 Score = 56.0 bits (28), Expect = 4e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 411 atcgactgccgccacgggcgcgccctcttcctctcc 446 ||||||||||||||||| ||||||||||||| |||| Sbjct: 6785 atcgactgccgccacggccgcgccctcttccactcc 6820 Score = 46.1 bits (23), Expect = 0.39 Identities = 59/71 (83%) Strand = Plus / Plus Query: 156 gtcgaagaggtcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctcc 215 ||||||||| ||||||| ||| ||||||| ||||| || | || | ||||||||||| Sbjct: 6500 gtcgaagagatcctcctgcgcctcccgccggacgatccctcgtgcgccgtccgcgcctcc 6559 Query: 216 ctcgtctgcaa 226 ||||||||||| Sbjct: 6560 ctcgtctgcaa 6570
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 56.0 bits (28), Expect = 4e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 |||||||||||||||||||||||||||| Sbjct: 1458789 cctcctccgcgcctccctcgtctgcaag 1458816 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Minus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 ||||| |||||||||||||||||||||| Sbjct: 2224766 cctcccccgcgcctccctcgtctgcaag 2224739 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Minus Query: 201 ctcctccgcgcctccctcgtctgcaag 227 |||| |||||||||||||||||||||| Sbjct: 2279466 ctcccccgcgcctccctcgtctgcaag 2279440 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 201 ctcctccgcgcctccctcgtctgcaa 226 |||| ||||||||||||||||||||| Sbjct: 2271927 ctcccccgcgcctccctcgtctgcaa 2271902 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 200 cctcctccgcgcctccctcgtctgca 225 ||||| |||||||||||||||||||| Sbjct: 2319035 cctcccccgcgcctccctcgtctgca 2319010 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 cgcgcctccctcgtctgcaag 227 ||||||||||||||||||||| Sbjct: 2258342 cgcgcctccctcgtctgcaag 2258322
>gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0049K09, complete sequence Length = 154181 Score = 56.0 bits (28), Expect = 4e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 |||||||||||||||||||||||||||| Sbjct: 71543 cctcctccgcgcctccctcgtctgcaag 71570
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 56.0 bits (28), Expect = 4e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 |||||||||||||||||||||||||||| Sbjct: 1458789 cctcctccgcgcctccctcgtctgcaag 1458816 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Minus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 ||||| |||||||||||||||||||||| Sbjct: 2224766 cctcccccgcgcctccctcgtctgcaag 2224739 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Minus Query: 410 catcgactgccgccacgggcgcgccctc 437 |||||||||||||||||| ||||||||| Sbjct: 2720495 catcgactgccgccacggccgcgccctc 2720468 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 ||||| |||||||||||||||||||||| Sbjct: 5719249 cctcccccgcgcctccctcgtctgcaag 5719276 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Minus Query: 201 ctcctccgcgcctccctcgtctgcaag 227 |||| |||||||||||||||||||||| Sbjct: 2279466 ctcccccgcgcctccctcgtctgcaag 2279440 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 201 ctcctccgcgcctccctcgtctgcaa 226 |||| ||||||||||||||||||||| Sbjct: 2271927 ctcccccgcgcctccctcgtctgcaa 2271902 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 200 cctcctccgcgcctccctcgtctgca 225 ||||| |||||||||||||||||||| Sbjct: 2319035 cctcccccgcgcctccctcgtctgca 2319010 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 412 tcgactgccgccacgggcgcgccctc 437 |||||||||||||||| ||||||||| Sbjct: 2727042 tcgactgccgccacggccgcgccctc 2727017 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 cgcgcctccctcgtctgcaag 227 ||||||||||||||||||||| Sbjct: 2258342 cgcgcctccctcgtctgcaag 2258322 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 cgcgcctccctcgtctgcaag 227 ||||||||||||||||||||| Sbjct: 2333394 cgcgcctccctcgtctgcaag 2333374 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 ccgcgcctccctcgtctgcaa 226 ||||||||||||||||||||| Sbjct: 2727260 ccgcgcctccctcgtctgcaa 2727240
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 56.0 bits (28), Expect = 4e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 411 atcgactgccgccacgggcgcgccctcttcctctcc 446 ||||||||||||||||| ||||||||||||| |||| Sbjct: 15893096 atcgactgccgccacggccgcgccctcttccactcc 15893131 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Minus Query: 201 ctcctccgcgcctccctcgtctgcaag 227 |||| |||||||||||||||||||||| Sbjct: 14736154 ctcccccgcgcctccctcgtctgcaag 14736128 Score = 46.1 bits (23), Expect = 0.39 Identities = 59/71 (83%) Strand = Plus / Plus Query: 156 gtcgaagaggtcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctcc 215 ||||||||| ||||||| ||| ||||||| ||||| || | || | ||||||||||| Sbjct: 15892811 gtcgaagagatcctcctgcgcctcccgccggacgatccctcgtgcgccgtccgcgcctcc 15892870 Query: 216 ctcgtctgcaa 226 ||||||||||| Sbjct: 15892871 ctcgtctgcaa 15892881
>dbj|AK107098.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H10, full insert sequence Length = 1686 Score = 56.0 bits (28), Expect = 4e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 |||||||||||||||||||||||||||| Sbjct: 251 cctcctccgcgcctccctcgtctgcaag 278
>ref|NM_001068024.1| Oryza sativa (japonica cultivar-group) Os08g0299900 (Os08g0299900) mRNA, complete cds Length = 1203 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Plus Query: 168 ctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgcaag 227 ||||||||| ||||||| || ||||| | | |||| |||||||| |||||||||||||| Sbjct: 70 ctcctccgcctcccgccggatgagcccgagcacctcttccgcgccgccctcgtctgcaag 129 Query: 228 tc 229 || Sbjct: 130 tc 131
>ref|NM_001065329.1| Oryza sativa (japonica cultivar-group) Os07g0122900 (Os07g0122900) mRNA, complete cds Length = 2725 Score = 52.0 bits (26), Expect = 0.006 Identities = 29/30 (96%) Strand = Plus / Plus Query: 412 tcgactgccgccacgggcgcgccctcttcc 441 |||||||||||||||| ||||||||||||| Sbjct: 346 tcgactgccgccacggccgcgccctcttcc 375
>gb|AC169377.4| Sorghum bicolor clone SB_BBc0068O12, complete sequence Length = 105241 Score = 52.0 bits (26), Expect = 0.006 Identities = 56/66 (84%) Strand = Plus / Plus Query: 162 gaggtcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtc 221 |||||||||||||| |||| | |||||||| || | |||| ||||||||||||| ||| Sbjct: 20830 gaggtcctcctccgtgtccccgcggacgagcccgcgcacctcgtccgcgcctccctagtc 20889 Query: 222 tgcaag 227 |||||| Sbjct: 20890 tgcaag 20895
>gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence Length = 158749 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Plus Query: 168 ctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgcaag 227 ||||||||| ||||||| || ||||| | | |||| |||||||| |||||||||||||| Sbjct: 94657 ctcctccgcctcccgccggatgagcccgagcacctcttccgcgccgccctcgtctgcaag 94716 Query: 228 tc 229 || Sbjct: 94717 tc 94718 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||| |||| || |||||||| | | |||| |||||||| |||||||||||| Sbjct: 116029 tcctcctccgcctccctccggacgagccagggcacctcttccgcgccgccctcgtctgca 115970 Query: 226 ag 227 || Sbjct: 115969 ag 115968
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Plus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||| |||| || |||||||| | | |||| |||||||| |||||||||||| Sbjct: 12277802 tcctcctccgcctccctccggacgagccagggcacctcttccgcgccgccctcgtctgca 12277861 Query: 226 ag 227 || Sbjct: 12277862 ag 12277863 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Minus Query: 168 ctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgcaag 227 ||||||||| ||||||| || ||||| | | |||| |||||||| |||||||||||||| Sbjct: 12299174 ctcctccgcctcccgccggatgagcccgagcacctcttccgcgccgccctcgtctgcaag 12299115 Query: 228 tc 229 || Sbjct: 12299114 tc 12299113 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 catttccccctccccaaatct 89 ||||||||||||||||||||| Sbjct: 6621421 catttccccctccccaaatct 6621401
>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence Length = 105215 Score = 52.0 bits (26), Expect = 0.006 Identities = 56/66 (84%) Strand = Plus / Minus Query: 162 gaggtcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtc 221 |||||||||||||| |||| | |||||||| || | |||| ||||||||||||| ||| Sbjct: 84386 gaggtcctcctccgtgtccccgcggacgagcccgcgcacctcgtccgcgcctccctagtc 84327 Query: 222 tgcaag 227 |||||| Sbjct: 84326 tgcaag 84321
>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0057M23 Length = 168029 Score = 52.0 bits (26), Expect = 0.006 Identities = 29/30 (96%) Strand = Plus / Plus Query: 412 tcgactgccgccacgggcgcgccctcttcc 441 |||||||||||||||| ||||||||||||| Sbjct: 81197 tcgactgccgccacggccgcgccctcttcc 81226 Score = 50.1 bits (25), Expect = 0.025 Identities = 31/33 (93%) Strand = Plus / Plus Query: 409 ccatcgactgccgccacgggcgcgccctcttcc 441 |||| |||||||||||||| ||||||||||||| Sbjct: 77581 ccatggactgccgccacggccgcgccctcttcc 77613 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 412 tcgactgccgccacgggcgcgccctc 437 |||||||||||||||| ||||||||| Sbjct: 85937 tcgactgccgccacggccgcgccctc 85912
>dbj|AP005819.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0063H21 Length = 188058 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Plus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||| |||| || |||||||| | | |||| |||||||| |||||||||||| Sbjct: 151294 tcctcctccgcctccctccggacgagccagggcacctcttccgcgccgccctcgtctgca 151353 Query: 226 ag 227 || Sbjct: 151354 ag 151355 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Minus Query: 168 ctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgcaag 227 ||||||||| ||||||| || ||||| | | |||| |||||||| |||||||||||||| Sbjct: 172666 ctcctccgcctcccgccggatgagcccgagcacctcttccgcgccgccctcgtctgcaag 172607 Query: 228 tc 229 || Sbjct: 172606 tc 172605
>dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0045D08 Length = 160541 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Plus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||| |||| || |||||||| | | |||| |||||||| |||||||||||| Sbjct: 36451 tcctcctccgcctccctccggacgagccagggcacctcttccgcgccgccctcgtctgca 36510 Query: 226 ag 227 || Sbjct: 36511 ag 36512 Score = 52.0 bits (26), Expect = 0.006 Identities = 53/62 (85%) Strand = Plus / Minus Query: 168 ctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgcaag 227 ||||||||| ||||||| || ||||| | | |||| |||||||| |||||||||||||| Sbjct: 57823 ctcctccgcctcccgccggatgagcccgagcacctcttccgcgccgccctcgtctgcaag 57764 Query: 228 tc 229 || Sbjct: 57763 tc 57762
>dbj|AK070767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069J11, full insert sequence Length = 2727 Score = 52.0 bits (26), Expect = 0.006 Identities = 29/30 (96%) Strand = Plus / Plus Query: 412 tcgactgccgccacgggcgcgccctcttcc 441 |||||||||||||||| ||||||||||||| Sbjct: 348 tcgactgccgccacggccgcgccctcttcc 377
>ref|NM_001070800.1| Oryza sativa (japonica cultivar-group) Os10g0188000 (Os10g0188000) mRNA, partial cds Length = 1126 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 ||||| |||||||||||||||||||||| Sbjct: 108 cctcccccgcgcctccctcgtctgcaag 135
>ref|NM_001070690.1| Oryza sativa (japonica cultivar-group) Os10g0145100 (Os10g0145100) mRNA, complete cds Length = 1698 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Plus Query: 410 catcgactgccgccacgggcgcgccctc 437 |||||||||||||||||| ||||||||| Sbjct: 380 catcgactgccgccacggccgcgccctc 407
>ref|NM_001070659.1| Oryza sativa (japonica cultivar-group) Os10g0136200 (Os10g0136200) mRNA, complete cds Length = 1724 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 ||||| |||||||||||||||||||||| Sbjct: 217 cctcccccgcgcctccctcgtctgcaag 244
>gb|AC105744.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0009C07, complete sequence Length = 124266 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Minus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 ||||| |||||||||||||||||||||| Sbjct: 62150 cctcccccgcgcctccctcgtctgcaag 62123
>gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, complete sequence Length = 156654 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Minus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 ||||| |||||||||||||||||||||| Sbjct: 50420 cctcccccgcgcctccctcgtctgcaag 50393 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Minus Query: 201 ctcctccgcgcctccctcgtctgcaag 227 |||| |||||||||||||||||||||| Sbjct: 105120 ctcccccgcgcctccctcgtctgcaag 105094 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 201 ctcctccgcgcctccctcgtctgcaa 226 |||| ||||||||||||||||||||| Sbjct: 97581 ctcccccgcgcctccctcgtctgcaa 97556 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 200 cctcctccgcgcctccctcgtctgca 225 ||||| |||||||||||||||||||| Sbjct: 144689 cctcccccgcgcctccctcgtctgca 144664 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 cgcgcctccctcgtctgcaag 227 ||||||||||||||||||||| Sbjct: 83996 cgcgcctccctcgtctgcaag 83976
>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence Length = 146836 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Minus Query: 410 catcgactgccgccacgggcgcgccctc 437 |||||||||||||||||| ||||||||| Sbjct: 47271 catcgactgccgccacggccgcgccctc 47244 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 412 tcgactgccgccacgggcgcgccctc 437 |||||||||||||||| ||||||||| Sbjct: 53818 tcgactgccgccacggccgcgccctc 53793 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 ccgcgcctccctcgtctgcaa 226 ||||||||||||||||||||| Sbjct: 54036 ccgcgcctccctcgtctgcaa 54016
>dbj|AK108031.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-B05, full insert sequence Length = 1268 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 ||||| |||||||||||||||||||||| Sbjct: 108 cctcccccgcgcctccctcgtctgcaag 135
>dbj|AK106351.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H11, full insert sequence Length = 1723 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 ||||| |||||||||||||||||||||| Sbjct: 217 cctcccccgcgcctccctcgtctgcaag 244
>dbj|AK073677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050I02, full insert sequence Length = 1699 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Plus Query: 410 catcgactgccgccacgggcgcgccctc 437 |||||||||||||||||| ||||||||| Sbjct: 381 catcgactgccgccacggccgcgccctc 408
>dbj|AK070503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054J12, full insert sequence Length = 1420 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Plus Query: 410 catcgactgccgccacgggcgcgccctc 437 |||||||||||||||||| ||||||||| Sbjct: 325 catcgactgccgccacggccgcgccctc 352
>dbj|AK069758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033H12, full insert sequence Length = 1556 Score = 48.1 bits (24), Expect = 0.098 Identities = 27/28 (96%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgcaag 227 ||||| |||||||||||||||||||||| Sbjct: 144 cctcccccgcgcctccctcgtctgcaag 171
>emb|CT834704.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA125D10, full insert sequence Length = 1495 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Plus Query: 201 ctcctccgcgcctccctcgtctgcaag 227 |||| |||||||||||||||||||||| Sbjct: 242 ctcccccgcgcctccctcgtctgcaag 268
>dbj|AK242930.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090086B10, full insert sequence Length = 1588 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Plus Query: 201 ctcctccgcgcctccctcgtctgcaag 227 |||| |||||||||||||||||||||| Sbjct: 240 ctcccccgcgcctccctcgtctgcaag 266
>ref|NM_001070663.1| Oryza sativa (japonica cultivar-group) Os10g0137000 (Os10g0137000) mRNA, complete cds Length = 2798 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Plus Query: 201 ctcctccgcgcctccctcgtctgcaag 227 |||| |||||||||||||||||||||| Sbjct: 259 ctcccccgcgcctccctcgtctgcaag 285
>ref|NM_001061723.1| Oryza sativa (japonica cultivar-group) Os05g0320100 (Os05g0320100) mRNA, complete cds Length = 1149 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Plus Query: 201 ctcctccgcgcctccctcgtctgcaag 227 |||| |||||||||||||||||||||| Sbjct: 115 ctcccccgcgcctccctcgtctgcaag 141
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188027 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Plus Query: 56 cccctccttcctccatttccccctccc 82 |||||||||||||| |||||||||||| Sbjct: 5450 cccctccttcctccctttccccctccc 5476
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22, complete sequence Length = 166052 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Minus Query: 201 ctcctccgcgcctccctcgtctgcaag 227 |||| |||||||||||||||||||||| Sbjct: 71568 ctcccccgcgcctccctcgtctgcaag 71542
>gb|AC102595.9| Mus musculus chromosome 10, clone RP23-360M11, complete sequence Length = 223843 Score = 46.1 bits (23), Expect = 0.39 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1337 ctatctatctatctgttttgtgc 1359 ||||||||||||||||||||||| Sbjct: 12946 ctatctatctatctgttttgtgc 12968
>gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, complete sequence Length = 132268 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Minus Query: 201 ctcctccgcgcctccctcgtctgcaag 227 |||| |||||||||||||||||||||| Sbjct: 8466 ctcccccgcgcctccctcgtctgcaag 8440 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 201 ctcctccgcgcctccctcgtctgcaa 226 |||| ||||||||||||||||||||| Sbjct: 927 ctcccccgcgcctccctcgtctgcaa 902 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 200 cctcctccgcgcctccctcgtctgca 225 ||||| |||||||||||||||||||| Sbjct: 48035 cctcccccgcgcctccctcgtctgca 48010 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 cgcgcctccctcgtctgcaag 227 ||||||||||||||||||||| Sbjct: 62394 cgcgcctccctcgtctgcaag 62374
>gb|AC160144.6| Mus musculus 10 BAC RP24-130G2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163335 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Plus Query: 56 cccctccttcctccatttccccctccc 82 |||||||||||||| |||||||||||| Sbjct: 154346 cccctccttcctccctttccccctccc 154372
>gb|AC158599.7| Mus musculus 10 BAC RP23-122O12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 191825 Score = 46.1 bits (23), Expect = 0.39 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1337 ctatctatctatctgttttgtgc 1359 ||||||||||||||||||||||| Sbjct: 124430 ctatctatctatctgttttgtgc 124452
>dbj|AK119430.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-A03, full insert sequence Length = 2800 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Plus Query: 201 ctcctccgcgcctccctcgtctgcaag 227 |||| |||||||||||||||||||||| Sbjct: 261 ctcccccgcgcctccctcgtctgcaag 287
>gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151309 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Plus Query: 56 cccctccttcctccatttccccctccc 82 |||||||||||||| |||||||||||| Sbjct: 63530 cccctccttcctccctttccccctccc 63556
>ref|NM_001070691.1| Oryza sativa (japonica cultivar-group) Os10g0145200 (Os10g0145200) mRNA, complete cds Length = 1509 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 412 tcgactgccgccacgggcgcgccctc 437 |||||||||||||||| ||||||||| Sbjct: 370 tcgactgccgccacggccgcgccctc 395 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 ccgcgcctccctcgtctgcaa 226 ||||||||||||||||||||| Sbjct: 152 ccgcgcctccctcgtctgcaa 172
>ref|NM_001070666.1| Oryza sativa (japonica cultivar-group) Os10g0137700 (Os10g0137700) mRNA, partial cds Length = 1510 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgca 225 ||||| |||||||||||||||||||| Sbjct: 139 cctcccccgcgcctccctcgtctgca 164
>ref|NM_001066016.1| Oryza sativa (japonica cultivar-group) Os07g0421000 (Os07g0421000) mRNA, complete cds Length = 1530 Score = 44.1 bits (22), Expect = 1.5 Identities = 52/62 (83%) Strand = Plus / Plus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||| ||| ||| |||||||| | | |||| ||||||| || |||||||||| Sbjct: 166 tcctcctccgcctccggccggacgagcccgagcacctcttccgcgcgtcactcgtctgca 225 Query: 226 ag 227 || Sbjct: 226 ag 227
>ref|NM_001065330.1| Oryza sativa (japonica cultivar-group) Os07g0123000 (Os07g0123000) mRNA, complete cds Length = 1834 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 412 tcgactgccgccacgggcgcgccctc 437 |||||||||||||||| ||||||||| Sbjct: 337 tcgactgccgccacggccgcgccctc 362
>gb|AC145807.3| Xenopus tropicalis clone CH216-9P15, complete sequence Length = 225784 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1337 ctatctatctatctgttttgtg 1358 |||||||||||||||||||||| Sbjct: 186748 ctatctatctatctgttttgtg 186727
>gb|AC008798.10| Homo sapiens chromosome 19 clone CTD-2057D4, complete sequence Length = 135331 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 59 ctccttcctccatttccccctc 80 |||||||||||||||||||||| Sbjct: 88449 ctccttcctccatttccccctc 88428
>emb|CR536601.8| Platypus DNA sequence from clone XX-307A9, complete sequence Length = 191674 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 58 cctccttcctccatttccccctcccc 83 |||||| ||||||||||||||||||| Sbjct: 144495 cctcctccctccatttccccctcccc 144470
>dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1123E10 Length = 134641 Score = 44.1 bits (22), Expect = 1.5 Identities = 52/62 (83%) Strand = Plus / Minus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||| ||| ||| |||||||| | | |||| ||||||| || |||||||||| Sbjct: 41715 tcctcctccgcctccggccggacgagcccgagcacctcttccgcgcgtcactcgtctgca 41656 Query: 226 ag 227 || Sbjct: 41655 ag 41654
>dbj|AK103313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125G21, full insert sequence Length = 1511 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgca 225 ||||| |||||||||||||||||||| Sbjct: 140 cctcccccgcgcctccctcgtctgca 165
>dbj|AK103298.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125B11, full insert sequence Length = 1510 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 412 tcgactgccgccacgggcgcgccctc 437 |||||||||||||||| ||||||||| Sbjct: 371 tcgactgccgccacggccgcgccctc 396 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 ccgcgcctccctcgtctgcaa 226 ||||||||||||||||||||| Sbjct: 153 ccgcgcctccctcgtctgcaa 173
>dbj|AK071522.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099N14, full insert sequence Length = 1531 Score = 44.1 bits (22), Expect = 1.5 Identities = 52/62 (83%) Strand = Plus / Plus Query: 166 tcctcctccgcatcccgcccgacgagccggcccgcctcctccgcgcctccctcgtctgca 225 ||||||||||| ||| ||| |||||||| | | |||| ||||||| || |||||||||| Sbjct: 167 tcctcctccgcctccggccggacgagcccgagcacctcttccgcgcgtcactcgtctgca 226 Query: 226 ag 227 || Sbjct: 227 ag 228
>dbj|AK070836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023071O06, full insert sequence Length = 1835 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 412 tcgactgccgccacgggcgcgccctc 437 |||||||||||||||| ||||||||| Sbjct: 338 tcgactgccgccacggccgcgccctc 363
>gb|L36722.1|MTTREVTRAN Melittangium lichenicola reverse transcriptase, complete cds Length = 3426 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 122 agcagcaccgccgccggcgctccctg 147 |||||||||||| ||||||||||||| Sbjct: 3008 agcagcaccgccaccggcgctccctg 2983
>emb|AM408235.1| Hipposideros cervinus microsatellite DNA, locus Hce34 Length = 337 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1337 ctatctatctatctgttttgt 1357 ||||||||||||||||||||| Sbjct: 290 ctatctatctatctgttttgt 270
>dbj|AK241331.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065144C21, full insert sequence Length = 841 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 catttccccctccccaaatct 89 ||||||||||||||||||||| Sbjct: 69 catttccccctccccaaatct 89
>ref|NM_001070667.1| Oryza sativa (japonica cultivar-group) Os10g0138000 (Os10g0138000) mRNA, complete cds Length = 2187 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 cgcgcctccctcgtctgcaag 227 ||||||||||||||||||||| Sbjct: 121 cgcgcctccctcgtctgcaag 141
>ref|NM_001069241.1| Oryza sativa (japonica cultivar-group) Os09g0261100 (Os09g0261100) mRNA, complete cds Length = 1493 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgc 224 ||||||||||||| ||||||||||| Sbjct: 107 cctcctccgcgccgccctcgtctgc 131
>gb|CP000158.1| Hyphomonas neptunium ATCC 15444, complete genome Length = 3705021 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 691 agactggtgcctggggcgagctgac 715 |||| |||||||||||||||||||| Sbjct: 3064792 agaccggtgcctggggcgagctgac 3064816
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ccgacgagccggcccgcctcc 204 ||||||||||||||||||||| Sbjct: 1780788 ccgacgagccggcccgcctcc 1780808
>ref|XM_001096034.1| PREDICTED: Macaca mulatta melanoma-associated antigen p97 (MFI2), mRNA Length = 4623 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 gccggcccgcctcctccgcgc 211 ||||||||||||||||||||| Sbjct: 2812 gccggcccgcctcctccgcgc 2832
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 cagcagcaccgccgccggcgc 141 ||||||||||||||||||||| Sbjct: 694557 cagcagcaccgccgccggcgc 694577
>ref|XM_920829.2| PREDICTED: Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), transcript variant 5 (Ppfibp1), mRNA Length = 4211 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 2893 ggccaccatgccagcagcacc 2913
>ref|XM_920813.2| PREDICTED: Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), transcript variant 3 (Ppfibp1), mRNA Length = 5159 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3841 ggccaccatgccagcagcacc 3861
>ref|XM_920862.2| PREDICTED: Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), transcript variant 9 (Ppfibp1), mRNA Length = 4717 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3399 ggccaccatgccagcagcacc 3419
>ref|XM_908399.2| PREDICTED: Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), transcript variant 2 (Ppfibp1), mRNA Length = 4703 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3385 ggccaccatgccagcagcacc 3405
>ref|XM_920875.2| PREDICTED: Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), transcript variant 12 (Ppfibp1), mRNA Length = 4720 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3402 ggccaccatgccagcagcacc 3422
>ref|XM_920869.2| PREDICTED: Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), transcript variant 11 (Ppfibp1), mRNA Length = 4813 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3495 ggccaccatgccagcagcacc 3515
>ref|XM_920865.2| PREDICTED: Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), transcript variant 10 (Ppfibp1), mRNA Length = 4736 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3418 ggccaccatgccagcagcacc 3438
>ref|XM_920843.2| PREDICTED: Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), transcript variant 6 (Ppfibp1), mRNA Length = 4825 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3507 ggccaccatgccagcagcacc 3527
>ref|XM_920851.2| PREDICTED: Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), transcript variant 7 (Ppfibp1), mRNA Length = 4843 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3525 ggccaccatgccagcagcacc 3545
>gb|DQ397559.1| Cenarchaeum symbiosum clone C21G07, complete sequence Length = 38150 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 gcccgcctcctccgcgcctcc 215 ||||||||||||||||||||| Sbjct: 14755 gcccgcctcctccgcgcctcc 14775
>gb|AC161376.2| Mus musculus BAC clone RP23-264M10 from chromosome 16, complete sequence Length = 199086 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 ttccccctccccaaatctgcc 92 ||||||||||||||||||||| Sbjct: 75381 ttccccctccccaaatctgcc 75361
>gb|AC153386.3| Mus musculus 6 BAC RP23-198D7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 170561 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 tgcaagtcctggagccagaca 242 ||||||||||||||||||||| Sbjct: 39989 tgcaagtcctggagccagaca 40009
>gb|AC147595.10| Mus musculus strain RIII clone mgsriii-p1_7 map 6, complete sequence Length = 90946 Score = 42.1 bits (21), Expect = 6.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 54 ttcccctccttcctccatttccccctccc 82 ||||| |||||||||| |||||||||||| Sbjct: 90444 ttcccttccttcctccctttccccctccc 90416
>gb|AC160400.12| Mus musculus 6 BAC RP23-321M22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 219634 Score = 42.1 bits (21), Expect = 6.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 54 ttcccctccttcctccatttccccctccc 82 ||||| |||||||||| |||||||||||| Sbjct: 17545 ttcccttccttcctccctttccccctccc 17517
>ref|NM_026221.1| Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1) (Ppfibp1), mRNA gb|BC072603.1| Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), mRNA (cDNA clone MGC:99889 IMAGE:6830850), complete cds Length = 4836 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3552 ggccaccatgccagcagcacc 3572
>gb|BC071257.1| Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), mRNA (cDNA clone IMAGE:5124433), complete cds Length = 2582 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 1283 ggccaccatgccagcagcacc 1303
>gb|AC125193.3| Mus musculus BAC clone RP23-268I12 from chromosome 14, complete sequence Length = 167771 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1337 ctatctatctatctgttttgt 1357 ||||||||||||||||||||| Sbjct: 138391 ctatctatctatctgttttgt 138371
>gb|BC058176.1| Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), mRNA (cDNA clone IMAGE:5252184), partial cds Length = 3412 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 2111 ggccaccatgccagcagcacc 2131
>gb|AC140436.3| Mus musculus BAC clone RP23-85O2 from chromosome 9, complete sequence Length = 142560 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1339 atctatctatctgttttgtgc 1359 ||||||||||||||||||||| Sbjct: 141434 atctatctatctgttttgtgc 141454
>gb|BC035209.1| Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), mRNA (cDNA clone IMAGE:3672808), containing frame-shift errors Length = 4729 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3421 ggccaccatgccagcagcacc 3441
>gb|AC124352.2| Mus musculus BAC clone RP24-477C23 from chromosome 9, complete sequence Length = 177886 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1339 atctatctatctgttttgtgc 1359 ||||||||||||||||||||| Sbjct: 177053 atctatctatctgttttgtgc 177073
>gb|AC114824.5| Mus musculus BAC clone RP23-342J11 from chromosome 17, complete sequence Length = 216044 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1337 ctatctatctatctgttttgtgcta 1361 ||||||||||||||||| ||||||| Sbjct: 91814 ctatctatctatctgttgtgtgcta 91790
>gb|BC060078.1| Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), mRNA (cDNA clone IMAGE:5705179), partial cds Length = 5140 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3848 ggccaccatgccagcagcacc 3868
>gb|AC144819.8| Mus musculus BAC clone RP23-162A11 from chromosome 14, complete sequence Length = 198432 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1337 ctatctatctatctgttttgt 1357 ||||||||||||||||||||| Sbjct: 194031 ctatctatctatctgttttgt 194051
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 gccagcagcaccgccgccggc 139 ||||||||||||||||||||| Sbjct: 670304 gccagcagcaccgccgccggc 670284 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 gcaggccatcgactgccgcca 424 ||||||||||||||||||||| Sbjct: 2967948 gcaggccatcgactgccgcca 2967928
>gb|BC049862.1| Mus musculus PTPRF interacting protein, binding protein 1 (liprin beta 1), mRNA (cDNA clone IMAGE:4976593), partial cds Length = 2368 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 1069 ggccaccatgccagcagcacc 1089
>gb|AC162948.4| Mus musculus BAC clone RP23-14N2 from chromosome 9, complete sequence Length = 221791 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1339 atctatctatctgttttgtgc 1359 ||||||||||||||||||||| Sbjct: 27199 atctatctatctgttttgtgc 27179
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 cggatttcggcgccgcctccg 274 ||||||||||||||||||||| Sbjct: 1732016 cggatttcggcgccgcctccg 1731996
>gb|AC156023.2| Mus musculus BAC clone RP23-210I15 from chromosome 16, complete sequence Length = 196765 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1430 cttttgacatgatgcctggct 1450 ||||||||||||||||||||| Sbjct: 102017 cttttgacatgatgcctggct 102037
>dbj|AK146575.1| Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920028N22 product:Liprin-beta1 homolog [Homo sapiens], full insert sequence Length = 3984 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3559 ggccaccatgccagcagcacc 3579
>dbj|AK154482.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630038I04 product:PTPRF interacting protein, binding protein 1 (liprin beta 1), full insert sequence Length = 3945 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3520 ggccaccatgccagcagcacc 3540
>dbj|AK152267.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830057M18 product:PTPRF interacting protein, binding protein 1 (liprin beta 1), full insert sequence Length = 1378 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 109 ggccaccatgccagcagcacc 129
>dbj|AK003318.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110002M17 product:PTPRF interacting protein, binding protein 1 (liprin beta 1), full insert sequence Length = 1180 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 196 ggccaccatgccagcagcacc 216
>gb|AC026419.5| Homo sapiens chromosome 5 clone CTD-2113H21, complete sequence Length = 94588 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1337 ctatctatctatctgttttgt 1357 ||||||||||||||||||||| Sbjct: 84750 ctatctatctatctgttttgt 84770
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 cggatttcggcgccgcctccg 274 ||||||||||||||||||||| Sbjct: 1987318 cggatttcggcgccgcctccg 1987338
>dbj|AK014559.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632409B19 product:PTPRF interacting protein, binding protein 1 (liprin beta 1), full insert sequence Length = 2929 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 1741 ggccaccatgccagcagcacc 1761
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 200 cctcctccgcgcctccctcgtctgc 224 ||||||||||||| ||||||||||| Sbjct: 4452467 cctcctccgcgccgccctcgtctgc 4452443
>emb|AL445930.11| Human DNA sequence from clone RP11-366O20 on chromosome 9 Contains the 5' end of a novel gene, the PPP6C gene for protein phosphatase 6 (catalytic subunit), a novel gene, a phosphoribosyl pyrophosphate synthetase 1(PRPS1) pseudogene, a laminin receptor 1 (LAMR1) pseudogene, the 5' end of the gene for Rab9 effector p40 (RAB9P40), and five CpG islands, complete sequence Length = 169149 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 ggcccgcctcctccgcgcctc 214 ||||||||||||||||||||| Sbjct: 99724 ggcccgcctcctccgcgcctc 99744
>emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chromosome 13, complete sequence Length = 149684 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1337 ctatctatctatctgttttgt 1357 ||||||||||||||||||||| Sbjct: 40728 ctatctatctatctgttttgt 40748
>dbj|AK173133.1| Mus musculus mRNA for mKIAA1230 protein Length = 4801 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 3513 ggccaccatgccagcagcacc 3533
>gb|AC145619.4| Homo sapiens BAC clone RP11-722J20 from chromosome 2, complete sequence Length = 152973 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 atttccccctccccaaatctg 90 ||||||||||||||||||||| Sbjct: 92314 atttccccctccccaaatctg 92334
>emb|AL603707.5| Mouse DNA sequence from clone RP23-422L16 on chromosome 11, complete sequence Length = 234182 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1371 tctgatcgtggagagcctttc 1391 ||||||||||||||||||||| Sbjct: 61800 tctgatcgtggagagcctttc 61820
>gb|AC153575.5| Mus musculus 6 BAC RP23-157O3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215023 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ggccaccatgccagcagcacc 130 ||||||||||||||||||||| Sbjct: 78996 ggccaccatgccagcagcacc 79016
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1331 tttgtgctatctatctatctg 1351 ||||||||||||||||||||| Sbjct: 23466 tttgtgctatctatctatctg 23486
>dbj|AP006157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1077E10 Length = 100821 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 200 cctcctccgcgcctccctcgtctgc 224 ||||||||||||| ||||||||||| Sbjct: 24955 cctcctccgcgccgccctcgtctgc 24931
>dbj|AP005488.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0003D23 Length = 151604 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 catttccccctccccaaatct 89 ||||||||||||||||||||| Sbjct: 54768 catttccccctccccaaatct 54748
>dbj|AK121607.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042G23, full insert sequence Length = 1495 Score = 42.1 bits (21), Expect = 6.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 cctcctccgcgcctccctcgtctgc 224 ||||||||||||| ||||||||||| Sbjct: 108 cctcctccgcgccgccctcgtctgc 132
>gb|AC142417.2| Homo sapiens fosmid clone XXFOS-87237G7 from 2, complete sequence Length = 19840 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 atttccccctccccaaatctg 90 ||||||||||||||||||||| Sbjct: 7702 atttccccctccccaaatctg 7722
>emb|BX005074.10| Zebrafish DNA sequence from clone CH211-146J7 in linkage group 8, complete sequence Length = 153989 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1337 ctatctatctatctgttttgt 1357 ||||||||||||||||||||| Sbjct: 129425 ctatctatctatctgttttgt 129405
>gb|AC125468.5| Mus musculus BAC clone RP24-113D21 from 7, complete sequence Length = 197913 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1337 ctatctatctatctgttttgt 1357 ||||||||||||||||||||| Sbjct: 70340 ctatctatctatctgttttgt 70320
>gb|AF067845.1|AF067845 Homo sapiens clone P1-4248, complete sequence Length = 108932 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 gttcccctccttcctccattt 73 ||||||||||||||||||||| Sbjct: 77251 gttcccctccttcctccattt 77231
>gb|AF053373.1|AF053373 Rattus norvegicus polymorphic marker D0UIA2 sequence Length = 471 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1337 ctatctatctatctgttttgt 1357 ||||||||||||||||||||| Sbjct: 148 ctatctatctatctgttttgt 168
>gb|AC104324.21| Mus musculus strain C57BL/6J chromosome 6 clone rp23-177j21, complete sequence Length = 193277 Score = 42.1 bits (21), Expect = 6.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 54 ttcccctccttcctccatttccccctccc 82 ||||| |||||||||| |||||||||||| Sbjct: 128254 ttcccttccttcctccctttccccctccc 128226
>gb|AC134899.4| Mus musculus BAC clone RP24-81B7 from 6, complete sequence Length = 197316 Score = 42.1 bits (21), Expect = 6.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 54 ttcccctccttcctccatttccccctccc 82 ||||| |||||||||| |||||||||||| Sbjct: 4815 ttcccttccttcctccctttccccctccc 4843
>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09, complete sequence Length = 187359 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 cgcgcctccctcgtctgcaag 227 ||||||||||||||||||||| Sbjct: 12598 cgcgcctccctcgtctgcaag 12618
>emb|Z80120.1|HSCAC7 H.sapiens CACNL1A4 gene, exon 7 Length = 387 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 tccttcctccatttccccctc 80 ||||||||||||||||||||| Sbjct: 18 tccttcctccatttccccctc 38
>ref|NM_017053.1| Rattus norvegicus tachykinin receptor 3 (Tacr3), mRNA gb|J05189.1|RATNEURA Rat neuromedin K receptor mRNA, complete cds Length = 2159 Score = 42.1 bits (21), Expect = 6.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ccaaatctgcctccaccacat 102 ||||||||||||||||||||| Sbjct: 1518 ccaaatctgcctccaccacat 1538 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 259,279,216 Number of extensions: 15132106 Number of successful extensions: 1187866 Number of sequences better than 10.0: 137 Number of HSP's gapped: 1187866 Number of HSP's successfully gapped: 189 Length of query: 1586 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1563 Effective length of database: 18,503,978,556 Effective search space: 28921718483028 Effective search space used: 28921718483028 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
