ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf13g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q58193:Y783_METJA Uncharacterized protein MJ0783 - Methanococcus... 34 1.2
2Q7RZ35:DBP4_NEUCR ATP-dependent RNA helicase dbp-4 - Neurospora ... 33 2.6
3O43426:SYNJ1_HUMAN Synaptojanin-1 - Homo sapiens (Human) 31 9.8

>Q58193:Y783_METJA Uncharacterized protein MJ0783 - Methanococcus jannaschii|
          Length = 186
 Score = 33.9 bits (76), Expect = 1.2
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = +3

Query: 627 VGFMEDGAQWLIDNTDIQLVGVDYLSVGAYDECIPAHLVFLEKREVILVEALN--LEHVA 800
           + F++D     I  ++I+ VG+D  ++G ++E    H   L    ++++E LN  L+++ 
Sbjct: 110 IPFLDD-----IIKSNIKCVGIDACTIGGFEE----HKRLLSNN-ILIIENLNENLKNLV 159

Query: 801 TGIYTLHCLPLRLRGAEGSPARCILV 878
              +    LPL++   + SP RCI +
Sbjct: 160 GKSFYFLGLPLKIFDIDASPIRCIAI 185



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>Q7RZ35:DBP4_NEUCR ATP-dependent RNA helicase dbp-4 - Neurospora crassa|
          Length = 823

 Score = 32.7 bits (73), Expect = 2.6
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 390 VDAPGHVFEHY-YDAGFDIDTLDLAVLNGPALLVDVPRDTNITADVMESLHIPKGVRRVL 566
           V  PG + +H    AGFD+D L + VL+    ++D+     + A V    H+PK  + +L
Sbjct: 183 VCTPGRMLQHLDQTAGFDVDNLQMLVLDEADRIMDMGFQQAVDALVE---HLPKSRQTLL 239

Query: 567 FRTLNTDR 590
           F    + R
Sbjct: 240 FSATQSKR 247



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>O43426:SYNJ1_HUMAN Synaptojanin-1 - Homo sapiens (Human)|
          Length = 1575

 Score = 30.8 bits (68), Expect = 9.8
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -2

Query: 409  TWPGASTWVPECAVSRSSEKLAMSEPLRMERASRRNPGVPSADSN 275
            T P +S     C     SE    S P+R  RA  R PG PSA S+
Sbjct: 1040 TSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSS 1084


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 151,287,859
Number of extensions: 3091950
Number of successful extensions: 7203
Number of sequences better than 10.0: 3
Number of HSP's gapped: 7200
Number of HSP's successfully gapped: 3
Length of query: 353
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 239
Effective length of database: 69,416,809
Effective search space: 16590617351
Effective search space used: 16590617351
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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