| Clone Name | FLbaf16h11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT830002.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035G24, full insert sequence Length = 518 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 123 gatgtacgacgctccgtcggggcaggagatgtcctacaccgaccacgtgcagaggcgcca 182 ||||||| || ||||| ||| |||||||||||||||| ||||||| || ||| |||||| Sbjct: 97 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 156 Query: 183 cgaggagaagggctgcctctacgcatgcgtgttcac 218 ||||| || ||||||||||| |||||| ||||||| Sbjct: 157 tgaggacaaaggctgcctctatgcatgcctgttcac 192
>dbj|AK062450.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C02, full insert sequence Length = 539 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 123 gatgtacgacgctccgtcggggcaggagatgtcctacaccgaccacgtgcagaggcgcca 182 ||||||| || ||||| ||| |||||||||||||||| ||||||| || ||| |||||| Sbjct: 101 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 160 Query: 183 cgaggagaagggctgcctctacgcatgcgtgttcac 218 ||||| || ||||||||||| |||||| ||||||| Sbjct: 161 tgaggacaaaggctgcctctatgcatgcctgttcac 196
>gb|AY103859.1| Zea mays PCO146670 mRNA sequence Length = 613 Score = 71.9 bits (36), Expect = 2e-09 Identities = 61/68 (89%), Gaps = 1/68 (1%) Strand = Plus / Plus Query: 144 gcaggagatgtcctacaccgaccacgtgc-agaggcgccacgaggagaagggctgcctct 202 |||||||||||||||| || ||||||| ||||||| |||||||||||||||||||||| Sbjct: 219 gcaggagatgtcctacttggagcacgtgccagaggcggcacgaggagaagggctgcctct 278 Query: 203 acgcatgc 210 ||| |||| Sbjct: 279 acggatgc 286
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 123 gatgtacgacgctccgtcggggcaggagatgtcctacaccgaccacgtgcagaggcgcca 182 ||||||| || ||||| ||| |||||||||||||||| ||||||| || ||| |||||| Sbjct: 4066219 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 4066160 Query: 183 cgaggagaagggctgcctctacgcatg 209 ||||| || ||||||||||| ||||| Sbjct: 4066159 tgaggacaaaggctgcctctatgcatg 4066133
>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0509B06 Length = 104515 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 123 gatgtacgacgctccgtcggggcaggagatgtcctacaccgaccacgtgcagaggcgcca 182 ||||||| || ||||| ||| |||||||||||||||| ||||||| || ||| |||||| Sbjct: 32962 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 32903 Query: 183 cgaggagaagggctgcctctacgcatg 209 ||||| || ||||||||||| ||||| Sbjct: 32902 tgaggacaaaggctgcctctatgcatg 32876
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 123 gatgtacgacgctccgtcggggcaggagatgtcctacaccgaccacgtgcagaggcgcca 182 ||||||| || ||||| ||| |||||||||||||||| ||||||| || ||| |||||| Sbjct: 13190 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 13131 Query: 183 cgaggagaagggctgcctctacgcatg 209 ||||| || ||||||||||| ||||| Sbjct: 13130 tgaggacaaaggctgcctctatgcatg 13104
>dbj|AK121057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056I18, full insert sequence Length = 508 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 169 gtgcagaggcgccacgaggagaagggctgcctctacgcatgc 210 |||||||||||||| ||||||||||| |||||||| |||||| Sbjct: 158 gtgcagaggcgccatgaggagaagggttgcctctatgcatgc 199
>emb|CT828323.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106B10, full insert sequence Length = 1050 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 169 gtgcagaggcgccacgaggagaagggctgcctctacgcatg 209 |||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 152 gtgcagaggcgccatgaggagaagggttgcctctatgcatg 192
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 169 gtgcagaggcgccacgaggagaagggctgcctctacgcatg 209 |||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 2261593 gtgcagaggcgccatgaggagaagggttgcctctatgcatg 2261553 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 184 gaggagaagggctgcctctacgcatg 209 |||||||||||||||||||||||||| Sbjct: 2262809 gaggagaagggctgcctctacgcatg 2262784
>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0535G04 Length = 154180 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 169 gtgcagaggcgccacgaggagaagggctgcctctacgcatg 209 |||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 121050 gtgcagaggcgccatgaggagaagggttgcctctatgcatg 121010 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 184 gaggagaagggctgcctctacgcatg 209 |||||||||||||||||||||||||| Sbjct: 122266 gaggagaagggctgcctctacgcatg 122241
>ref|NM_001063310.1| Oryza sativa (japonica cultivar-group) Os06g0143100 (Os06g0143100) mRNA, partial cds Length = 491 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 184 gaggagaagggctgcctctacgcatgc 210 ||||||||||||||||||||||||||| Sbjct: 156 gaggagaagggctgcctctacgcatgc 182
>dbj|AK061597.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G09, full insert sequence Length = 491 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 184 gaggagaagggctgcctctacgcatgc 210 ||||||||||||||||||||||||||| Sbjct: 156 gaggagaagggctgcctctacgcatgc 182
>gb|AC092705.3| Homo sapiens chromosome 18, clone RP11-886H22, complete sequence Length = 137416 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 catcttcccaaagccacaggaa 30 |||||||||||||||||||||| Sbjct: 101659 catcttcccaaagccacaggaa 101638
>gb|AC188192.3| Taeniopygia guttata BAC clone TGMCBa-5H12 from chromosome unknown, complete sequence Length = 131069 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 419 atatttctgtactgcctttca 439 ||||||||||||||||||||| Sbjct: 120303 atatttctgtactgcctttca 120323
>gb|AC009796.6|AC009796 Homo sapiens chromosome 11, clone RP11-211E17, complete sequence Length = 192239 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 ccagccatggccgccatggac 313 ||||||||||||||||||||| Sbjct: 130956 ccagccatggccgccatggac 130976
>gb|DQ286564.1| Triticum aestivum putative membrane protein mRNA, complete cds Length = 659 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 190 aagggctgcctctacgcatgcgtgttca 217 ||||||||| ||| |||||||||||||| Sbjct: 516 aagggctgcttctgcgcatgcgtgttca 543
>gb|AC121879.3| Mus musculus chromosome 19 clone RP24-132B24, complete sequence Length = 134662 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 ctgtactgcctttcacaata 444 |||||||||||||||||||| Sbjct: 85030 ctgtactgcctttcacaata 85011
>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone OSJNBa0031O09, complete sequence Length = 161339 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 atatatgtgtgtctagtgtc 391 |||||||||||||||||||| Sbjct: 92260 atatatgtgtgtctagtgtc 92241
>ref|XM_605127.2| PREDICTED: Bos taurus similar to polymerase (RNA) II (DNA directed) polypeptide B (LOC526753), partial mRNA Length = 790 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tttgccaagatgtacgacgc 134 |||||||||||||||||||| Sbjct: 47 tttgccaagatgtacgacgc 66
>gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic sequence, complete sequence Length = 184366 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 atatatgtgtgtctagtgtc 391 |||||||||||||||||||| Sbjct: 95411 atatatgtgtgtctagtgtc 95430
>gb|AY554355.1| Takifugu rubripes claudin 11b (cldn11b) gene, complete cds Length = 6531 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 cggagcagagcacaacccttggag 61 ||||||||||| |||||||||||| Sbjct: 5164 cggagcagagctcaacccttggag 5141
>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence Length = 218079 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 ctgtactgcctttcacaata 444 |||||||||||||||||||| Sbjct: 8285 ctgtactgcctttcacaata 8266
>gb|U49945.1| Caenorhabditis elegans cosmid C02H7, complete sequence Length = 34671 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 tcacaataagcatatatatg 456 |||||||||||||||||||| Sbjct: 30249 tcacaataagcatatatatg 30230
>gb|AC158198.2| Physcomitrella patens clone JGIASYB-1A13, complete sequence Length = 35440 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 ctttcacaataagcatatat 453 |||||||||||||||||||| Sbjct: 4138 ctttcacaataagcatatat 4157
>gb|AC084430.13| Homo sapiens 12p BAC RP11-96B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 72022 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 cagaagaactgtatcagata 421 |||||||||||||||||||| Sbjct: 52134 cagaagaactgtatcagata 52153
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 atatatgtgtgtctagtgtc 391 |||||||||||||||||||| Sbjct: 29003538 atatatgtgtgtctagtgtc 29003557
>gb|AC104599.4| Homo sapiens BAC clone RP11-652K9 from 2, complete sequence Length = 80146 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 tgcctttcacaataagcatatata 454 ||||||||||||||||||| |||| Sbjct: 19287 tgcctttcacaataagcatgtata 19264
>gb|AC079895.7| Homo sapiens BAC clone RP11-749M12 from 2, complete sequence Length = 149309 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 tgcctttcacaataagcatatata 454 ||||||||||||||||||| |||| Sbjct: 8419 tgcctttcacaataagcatgtata 8396
>gb|AC133282.7| Mus musculus chromosome 15, clone RP24-408B1, complete sequence Length = 183129 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 tgtactgcctttcacaataa 445 |||||||||||||||||||| Sbjct: 97791 tgtactgcctttcacaataa 97772
>gb|AC109219.13| Mus musculus chromosome 1, clone RP23-429I18, complete sequence Length = 204942 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 tgtatcagatatttctgtac 430 |||||||||||||||||||| Sbjct: 116324 tgtatcagatatttctgtac 116343
>gb|AC026624.8| Homo sapiens chromosome 15, clone RP11-652P10, complete sequence Length = 143709 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tttcacaataagcatatata 454 |||||||||||||||||||| Sbjct: 94608 tttcacaataagcatatata 94589
>gb|AC110232.15| Mus musculus chromosome 1, clone RP23-67H24, complete sequence Length = 209668 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 tgtatcagatatttctgtac 430 |||||||||||||||||||| Sbjct: 170853 tgtatcagatatttctgtac 170834
>dbj|AP001357.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-807E13, complete sequence Length = 182382 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ataagcatatatgtgtgtct 385 |||||||||||||||||||| Sbjct: 41459 ataagcatatatgtgtgtct 41478
>dbj|AP002449.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-773H22, complete sequence Length = 184000 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ataagcatatatgtgtgtct 385 |||||||||||||||||||| Sbjct: 174210 ataagcatatatgtgtgtct 174229
>gb|U81831.1|HSU81831 Human cosmid LL12NCO1-67C6, ETV6 gene, intron 1A, partial sequence Length = 38674 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 cagaagaactgtatcagata 421 |||||||||||||||||||| Sbjct: 27598 cagaagaactgtatcagata 27579 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 68,568,627 Number of extensions: 3449096 Number of successful extensions: 245831 Number of sequences better than 10.0: 35 Number of HSP's gapped: 245830 Number of HSP's successfully gapped: 37 Length of query: 473 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 451 Effective length of database: 18,508,616,841 Effective search space: 8347386195291 Effective search space used: 8347386195291 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)