ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf16h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT830002.1| Oryza sativa (indica cultivar-group) cDNA clone:... 80 8e-12
2dbj|AK062450.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 8e-12
3gb|AY103859.1| Zea mays PCO146670 mRNA sequence 72 2e-09
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
5dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
6dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
7dbj|AK121057.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
8emb|CT828323.1| Oryza sativa (indica cultivar-group) cDNA clone:... 58 3e-05
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
10dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
11ref|NM_001063310.1| Oryza sativa (japonica cultivar-group) Os06g... 54 5e-04
12dbj|AK061597.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
13gb|AC092705.3| Homo sapiens chromosome 18, clone RP11-886H22, co... 44 0.44
14gb|AC188192.3| Taeniopygia guttata BAC clone TGMCBa-5H12 from ch... 42 1.7
15gb|AC009796.6|AC009796 Homo sapiens chromosome 11, clone RP11-21... 42 1.7
16gb|DQ286564.1| Triticum aestivum putative membrane protein mRNA,... 40 6.9
17gb|AC121879.3| Mus musculus chromosome 19 clone RP24-132B24, com... 40 6.9
18gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
19ref|XM_605127.2| PREDICTED: Bos taurus similar to polymerase (RN... 40 6.9
20gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic seque... 40 6.9
21gb|AY554355.1| Takifugu rubripes claudin 11b (cldn11b) gene, com... 40 6.9
22gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, com... 40 6.9
23gb|U49945.1| Caenorhabditis elegans cosmid C02H7, complete sequence 40 6.9
24gb|AC158198.2| Physcomitrella patens clone JGIASYB-1A13, complet... 40 6.9
25gb|AC084430.13| Homo sapiens 12p BAC RP11-96B19 (Roswell Park Ca... 40 6.9
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
27gb|AC104599.4| Homo sapiens BAC clone RP11-652K9 from 2, complet... 40 6.9
28gb|AC079895.7| Homo sapiens BAC clone RP11-749M12 from 2, comple... 40 6.9
29gb|AC133282.7| Mus musculus chromosome 15, clone RP24-408B1, com... 40 6.9
30gb|AC109219.13| Mus musculus chromosome 1, clone RP23-429I18, co... 40 6.9
31gb|AC026624.8| Homo sapiens chromosome 15, clone RP11-652P10, co... 40 6.9
32gb|AC110232.15| Mus musculus chromosome 1, clone RP23-67H24, com... 40 6.9
33dbj|AP001357.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.9
34dbj|AP002449.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.9
35gb|U81831.1|HSU81831 Human cosmid LL12NCO1-67C6, ETV6 gene, intr... 40 6.9

>emb|CT830002.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035G24, full
           insert sequence
          Length = 518
 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                       
Query: 123 gatgtacgacgctccgtcggggcaggagatgtcctacaccgaccacgtgcagaggcgcca 182
           ||||||| || ||||| ||| |||||||||||||||| ||||||| ||  ||| ||||||
Sbjct: 97  gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 156

                                               
Query: 183 cgaggagaagggctgcctctacgcatgcgtgttcac 218
            ||||| || ||||||||||| |||||| |||||||
Sbjct: 157 tgaggacaaaggctgcctctatgcatgcctgttcac 192



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>dbj|AK062450.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C02, full
           insert sequence
          Length = 539

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                       
Query: 123 gatgtacgacgctccgtcggggcaggagatgtcctacaccgaccacgtgcagaggcgcca 182
           ||||||| || ||||| ||| |||||||||||||||| ||||||| ||  ||| ||||||
Sbjct: 101 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 160

                                               
Query: 183 cgaggagaagggctgcctctacgcatgcgtgttcac 218
            ||||| || ||||||||||| |||||| |||||||
Sbjct: 161 tgaggacaaaggctgcctctatgcatgcctgttcac 196



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>gb|AY103859.1| Zea mays PCO146670 mRNA sequence
          Length = 613

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 61/68 (89%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                       
Query: 144 gcaggagatgtcctacaccgaccacgtgc-agaggcgccacgaggagaagggctgcctct 202
           ||||||||||||||||   || ||||||| ||||||| ||||||||||||||||||||||
Sbjct: 219 gcaggagatgtcctacttggagcacgtgccagaggcggcacgaggagaagggctgcctct 278

                   
Query: 203 acgcatgc 210
           ||| ||||
Sbjct: 279 acggatgc 286



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                           
Query: 123     gatgtacgacgctccgtcggggcaggagatgtcctacaccgaccacgtgcagaggcgcca 182
               ||||||| || ||||| ||| |||||||||||||||| ||||||| ||  ||| ||||||
Sbjct: 4066219 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 4066160

                                          
Query: 183     cgaggagaagggctgcctctacgcatg 209
                ||||| || ||||||||||| |||||
Sbjct: 4066159 tgaggacaaaggctgcctctatgcatg 4066133



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>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0509B06
          Length = 104515

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                         
Query: 123   gatgtacgacgctccgtcggggcaggagatgtcctacaccgaccacgtgcagaggcgcca 182
             ||||||| || ||||| ||| |||||||||||||||| ||||||| ||  ||| ||||||
Sbjct: 32962 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 32903

                                        
Query: 183   cgaggagaagggctgcctctacgcatg 209
              ||||| || ||||||||||| |||||
Sbjct: 32902 tgaggacaaaggctgcctctatgcatg 32876



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>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406H10
          Length = 156419

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                         
Query: 123   gatgtacgacgctccgtcggggcaggagatgtcctacaccgaccacgtgcagaggcgcca 182
             ||||||| || ||||| ||| |||||||||||||||| ||||||| ||  ||| ||||||
Sbjct: 13190 gatgtacaaccctccggcggcgcaggagatgtcctactccgaccatgtcaagaagcgcca 13131

                                        
Query: 183   cgaggagaagggctgcctctacgcatg 209
              ||||| || ||||||||||| |||||
Sbjct: 13130 tgaggacaaaggctgcctctatgcatg 13104



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>dbj|AK121057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056I18, full
           insert sequence
          Length = 508

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 169 gtgcagaggcgccacgaggagaagggctgcctctacgcatgc 210
           |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 158 gtgcagaggcgccatgaggagaagggttgcctctatgcatgc 199



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>emb|CT828323.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106B10, full
           insert sequence
          Length = 1050

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 169 gtgcagaggcgccacgaggagaagggctgcctctacgcatg 209
           |||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 152 gtgcagaggcgccatgaggagaagggttgcctctatgcatg 192



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                        
Query: 169     gtgcagaggcgccacgaggagaagggctgcctctacgcatg 209
               |||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 2261593 gtgcagaggcgccatgaggagaagggttgcctctatgcatg 2261553



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                         
Query: 184     gaggagaagggctgcctctacgcatg 209
               ||||||||||||||||||||||||||
Sbjct: 2262809 gaggagaagggctgcctctacgcatg 2262784



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>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0535G04
          Length = 154180

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 169    gtgcagaggcgccacgaggagaagggctgcctctacgcatg 209
              |||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 121050 gtgcagaggcgccatgaggagaagggttgcctctatgcatg 121010



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 184    gaggagaagggctgcctctacgcatg 209
              ||||||||||||||||||||||||||
Sbjct: 122266 gaggagaagggctgcctctacgcatg 122241



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>ref|NM_001063310.1| Oryza sativa (japonica cultivar-group) Os06g0143100 (Os06g0143100)
           mRNA, partial cds
          Length = 491

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 184 gaggagaagggctgcctctacgcatgc 210
           |||||||||||||||||||||||||||
Sbjct: 156 gaggagaagggctgcctctacgcatgc 182



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>dbj|AK061597.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G09, full
           insert sequence
          Length = 491

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 184 gaggagaagggctgcctctacgcatgc 210
           |||||||||||||||||||||||||||
Sbjct: 156 gaggagaagggctgcctctacgcatgc 182



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>gb|AC092705.3| Homo sapiens chromosome 18, clone RP11-886H22, complete sequence
          Length = 137416

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 9      catcttcccaaagccacaggaa 30
              ||||||||||||||||||||||
Sbjct: 101659 catcttcccaaagccacaggaa 101638



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>gb|AC188192.3| Taeniopygia guttata BAC clone TGMCBa-5H12 from chromosome unknown,
              complete sequence
          Length = 131069

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 419    atatttctgtactgcctttca 439
              |||||||||||||||||||||
Sbjct: 120303 atatttctgtactgcctttca 120323



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>gb|AC009796.6|AC009796 Homo sapiens chromosome 11, clone RP11-211E17, complete sequence
          Length = 192239

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 293    ccagccatggccgccatggac 313
              |||||||||||||||||||||
Sbjct: 130956 ccagccatggccgccatggac 130976



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>gb|DQ286564.1| Triticum aestivum putative membrane protein mRNA, complete cds
          Length = 659

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 190 aagggctgcctctacgcatgcgtgttca 217
           ||||||||| ||| ||||||||||||||
Sbjct: 516 aagggctgcttctgcgcatgcgtgttca 543



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>gb|AC121879.3| Mus musculus chromosome 19 clone RP24-132B24, complete sequence
          Length = 134662

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   ctgtactgcctttcacaata 444
             ||||||||||||||||||||
Sbjct: 85030 ctgtactgcctttcacaata 85011



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>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone
             OSJNBa0031O09, complete sequence
          Length = 161339

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   atatatgtgtgtctagtgtc 391
             ||||||||||||||||||||
Sbjct: 92260 atatatgtgtgtctagtgtc 92241



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>ref|XM_605127.2| PREDICTED: Bos taurus similar to polymerase (RNA) II (DNA directed)
           polypeptide B (LOC526753), partial mRNA
          Length = 790

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 tttgccaagatgtacgacgc 134
           ||||||||||||||||||||
Sbjct: 47  tttgccaagatgtacgacgc 66



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>gb|AC147426.2| Oryza sativa chromosome 3  B1377B10 genomic sequence, complete sequence
          Length = 184366

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   atatatgtgtgtctagtgtc 391
             ||||||||||||||||||||
Sbjct: 95411 atatatgtgtgtctagtgtc 95430



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>gb|AY554355.1| Takifugu rubripes claudin 11b (cldn11b) gene, complete cds
          Length = 6531

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 38   cggagcagagcacaacccttggag 61
            ||||||||||| ||||||||||||
Sbjct: 5164 cggagcagagctcaacccttggag 5141



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>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence
          Length = 218079

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 425  ctgtactgcctttcacaata 444
            ||||||||||||||||||||
Sbjct: 8285 ctgtactgcctttcacaata 8266



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>gb|U49945.1| Caenorhabditis elegans cosmid C02H7, complete sequence
          Length = 34671

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   tcacaataagcatatatatg 456
             ||||||||||||||||||||
Sbjct: 30249 tcacaataagcatatatatg 30230



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>gb|AC158198.2| Physcomitrella patens clone JGIASYB-1A13, complete sequence
          Length = 35440

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 434  ctttcacaataagcatatat 453
            ||||||||||||||||||||
Sbjct: 4138 ctttcacaataagcatatat 4157



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>gb|AC084430.13| Homo sapiens 12p BAC RP11-96B19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 72022

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   cagaagaactgtatcagata 421
             ||||||||||||||||||||
Sbjct: 52134 cagaagaactgtatcagata 52153



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 372      atatatgtgtgtctagtgtc 391
                ||||||||||||||||||||
Sbjct: 29003538 atatatgtgtgtctagtgtc 29003557



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>gb|AC104599.4| Homo sapiens BAC clone RP11-652K9 from 2, complete sequence
          Length = 80146

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 431   tgcctttcacaataagcatatata 454
             ||||||||||||||||||| ||||
Sbjct: 19287 tgcctttcacaataagcatgtata 19264



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>gb|AC079895.7| Homo sapiens BAC clone RP11-749M12 from 2, complete sequence
          Length = 149309

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 431  tgcctttcacaataagcatatata 454
            ||||||||||||||||||| ||||
Sbjct: 8419 tgcctttcacaataagcatgtata 8396



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>gb|AC133282.7| Mus musculus chromosome 15, clone RP24-408B1, complete sequence
          Length = 183129

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 426   tgtactgcctttcacaataa 445
             ||||||||||||||||||||
Sbjct: 97791 tgtactgcctttcacaataa 97772



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>gb|AC109219.13| Mus musculus chromosome 1, clone RP23-429I18, complete sequence
          Length = 204942

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 411    tgtatcagatatttctgtac 430
              ||||||||||||||||||||
Sbjct: 116324 tgtatcagatatttctgtac 116343



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>gb|AC026624.8| Homo sapiens chromosome 15, clone RP11-652P10, complete sequence
          Length = 143709

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   tttcacaataagcatatata 454
             ||||||||||||||||||||
Sbjct: 94608 tttcacaataagcatatata 94589



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>gb|AC110232.15| Mus musculus chromosome 1, clone RP23-67H24, complete sequence
          Length = 209668

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    tgtatcagatatttctgtac 430
              ||||||||||||||||||||
Sbjct: 170853 tgtatcagatatttctgtac 170834



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>dbj|AP001357.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-807E13, complete
             sequence
          Length = 182382

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   ataagcatatatgtgtgtct 385
             ||||||||||||||||||||
Sbjct: 41459 ataagcatatatgtgtgtct 41478



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>dbj|AP002449.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-773H22, complete
              sequence
          Length = 184000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    ataagcatatatgtgtgtct 385
              ||||||||||||||||||||
Sbjct: 174210 ataagcatatatgtgtgtct 174229



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>gb|U81831.1|HSU81831 Human cosmid LL12NCO1-67C6, ETV6 gene, intron 1A, partial sequence
          Length = 38674

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   cagaagaactgtatcagata 421
             ||||||||||||||||||||
Sbjct: 27598 cagaagaactgtatcagata 27579


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 68,568,627
Number of extensions: 3449096
Number of successful extensions: 245831
Number of sequences better than 10.0: 35
Number of HSP's gapped: 245830
Number of HSP's successfully gapped: 37
Length of query: 473
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 451
Effective length of database: 18,508,616,841
Effective search space: 8347386195291
Effective search space used: 8347386195291
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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