>Q94C11:SF04_ARATH Splicing factor 4-like protein - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 443
 Score =  320 bits (819), Expect = 3e-86
 Identities = 176/318 (55%), Positives = 206/318 (64%), Gaps = 18/318 (5%)
 Frame = +3

Query: 1524 ASAPPNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRL 1703
            A  PP+D TV++VADKLASFVAK+GR FE ITRQKNPGD+PFKFLFD+NC+DYKYY  RL
Sbjct: 130  APPPPSDPTVKKVADKLASFVAKHGRPFEHITRQKNPGDTPFKFLFDENCADYKYYVFRL 189

Query: 1704 AEEEKVHAQTKDAHASKIVNSSTASSIAHTG--PQRSSFEQRSNYQTPASALY------G 1859
            AEEEK+ +QTKD   S +++S  A S   T   P +    Q++ YQ PASALY      G
Sbjct: 190  AEEEKLISQTKD---SGVLHSGDAGSRTSTAAIPLQKPAYQQTGYQIPASALYDTPVEPG 246

Query: 1860 AYEXXXXXXXXXXXXXXXXXAP--SDPVALMEFYMKKAAQEERKRPPRQSKDEMPPPPCL 2033
            A                    P  +DP+++MEFYMKKAAQEE+ R PRQSKDEMPPP  L
Sbjct: 247  ASSRSAQASITRPSDSDSFSGPRGADPLSMMEFYMKKAAQEEKMRRPRQSKDEMPPPASL 306

Query: 2034 VQGPP--------NKGHHMGDFIPQEELEKFMARCNDXXXXXXXXXXXXXXXXXXDNIGH 2189
             QGP          +GHHMGD+IP EEL+KF+++CND                  DN+GH
Sbjct: 307  -QGPSETSSTDPGKRGHHMGDYIPLEELDKFLSKCNDAAAQKATKEAAEKAKIQADNVGH 365

Query: 2190 KLLSKMXXXXXXXXXXXXXXXADPIMAGDVKQDHLGVGAIQPGEVSSEDDIYEQYKKRMM 2369
            KLLSKM               ADPIMAGDVK ++LGVGA  PGEV  EDDIYEQYKKRMM
Sbjct: 366  KLLSKMGWKEGEGIGSSRKGMADPIMAGDVKTNNLGVGASAPGEVKPEDDIYEQYKKRMM 425

Query: 2370 LGYRHRPNPLNNPRKQYY 2423
            LGY+HRPNPL NPRK YY
Sbjct: 426  LGYKHRPNPLGNPRKAYY 443



 Score = 39.7 bits (91), Expect = 0.069
 Identities = 36/98 (36%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +2

Query: 458 MDKG----LFANDGSFMERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNPKTPLV 625
           MDKG    +F NDGSFMERF                                 NPK    
Sbjct: 1   MDKGAPPSIFVNDGSFMERFRQLQQEKDKDKDKVVQVEDSKPVKIIS------NPKP--- 51

Query: 626 IAANKRPLEVKKAGSVLSGGKLAFSLK-KNKIPIMPVK 736
            AANK  + +K   +   GGKLAFSLK K+K+   PVK
Sbjct: 52  -AANKISIGLKPNDAQKKGGKLAFSLKQKSKLLAPPVK 88

>Q8IWZ8:SF04_HUMAN Splicing factor 4 - Homo sapiens (Human)|
          Length = 645

 Score = 89.7 bits (221), Expect = 6e-17
 Identities = 48/123 (39%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
 Frame = +3

Query: 2058 HHMGDFIPQEELEKFMARCNDXXXXXXXXXXXXXXXXXX-DNIGHKLLSKMXXXXXXXXX 2234
            H +GDF+P +ELEKFM                        +NIG+++L KM         
Sbjct: 523  HFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGYQMLMKMGWKEGEGLG 582

Query: 2235 XXXXXXADPIMAGDVKQDHLGVGAIQPGEVSSEDDIYEQYKKRMMLGYRHRPNPLNNPRK 2414
                   +P+  G    D  G G  +P E+S EDD YE ++KRMML YR RPNPLNNPR+
Sbjct: 583  SEGQGIKNPVNKGTTTVDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRR 642

Query: 2415 QYY 2423
             YY
Sbjct: 643  PYY 645



 Score = 59.7 bits (143), Expect = 6e-08
 Identities = 52/169 (30%), Positives = 68/169 (40%), Gaps = 5/169 (2%)
 Frame = +3

Query: 1530 APPNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAE 1709
            +PP D  V+ +A+KLA F+A  G + E I  Q N  +  F FL++ N   YKYY  +L E
Sbjct: 256  SPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLEE 315

Query: 1710 EEKVHAQTKDAHASKIVNSSTASSIA-HTGPQRSSFEQRSNYQTPASALYGAYEXXXXXX 1886
              K  A            SST S  A   G +R S         P  AL G+        
Sbjct: 316  FRKAKA------------SSTGSFTAPDPGLKRKS---------PPEALSGSLPPATTCP 354

Query: 1887 XXXXXXXXXXXAPSDPVALMEFYMKKAAQEERKRP----PRQSKDEMPP 2021
                       AP+ P          AA  +RKR     P + K E+PP
Sbjct: 355  ASSTPAPTIIPAPAAPGK-----PASAATVKRKRKSRWGPEEDKVELPP 398



 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
 Frame = +3

Query: 1530 APPNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAE 1709
            +PP     R+V +KLA FVA+ G + E +  +    +  F FL DKN  ++ YY  ++AE
Sbjct: 181  SPPEGAETRKVIEKLARFVAEGGPELEKVAMEDYKDNPAFAFLHDKNSREFLYYRKKVAE 240

Query: 1710 EEKVHAQTKDAHASKI----------VNSSTASSIAHTGPQRSSFEQRSNYQTPA-SALY 1856
              K  AQ   A + K+          +    A  IA  GP+  +   ++N +  A S LY
Sbjct: 241  IRK-EAQKSQAASQKVSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLY 299

>Q68FU8:SF04_RAT Splicing factor 4 - Rattus norvegicus (Rat)|
          Length = 644

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 48/123 (39%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
 Frame = +3

Query: 2058 HHMGDFIPQEELEKFMARCNDXXXXXXXXXXXXXXXXXX-DNIGHKLLSKMXXXXXXXXX 2234
            H +GDF+P +ELEKFM                        +NIG+++L KM         
Sbjct: 522  HFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGYQMLMKMGWKEGEGLG 581

Query: 2235 XXXXXXADPIMAGDVKQDHLGVGAIQPGEVSSEDDIYEQYKKRMMLGYRHRPNPLNNPRK 2414
                   +P+  G    D  G G  +P E+S EDD YE ++KRMML YR RPNPLNNPR+
Sbjct: 582  TEGQGIKNPVNKGATTIDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRR 641

Query: 2415 QYY 2423
             YY
Sbjct: 642  PYY 644



 Score = 58.5 bits (140), Expect = 1e-07
 Identities = 28/80 (35%), Positives = 43/80 (53%)
 Frame = +3

Query: 1530 APPNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAE 1709
            +PP D   + +A+KLA F+A  G + E I  Q N  +  F FL+D N   Y+YY+ +L E
Sbjct: 253  SPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYKQKLEE 312

Query: 1710 EEKVHAQTKDAHASKIVNSS 1769
              K  A +  +  + + N S
Sbjct: 313  FRKAKAGSTGSLPAPVPNPS 332



 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
 Frame = +3

Query: 1530 APPNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAE 1709
            +PP     R+V +KLA FVA+ G + E +  +    +  F FL DKN  ++ YY  ++AE
Sbjct: 178  SPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRKKVAE 237

Query: 1710 EEKVHAQTKDAHASKI----------VNSSTASSIAHTGPQRSSFEQRSNYQTPA-SALY 1856
              K  AQ   A   K+          +    A  IA  GP+  +   ++N +  A S LY
Sbjct: 238  IRK-EAQKPQAATQKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLY 296

>Q8CH02:SF04_MOUSE Splicing factor 4 - Mus musculus (Mouse)|
          Length = 643

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 48/123 (39%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
 Frame = +3

Query: 2058 HHMGDFIPQEELEKFMARCNDXXXXXXXXXXXXXXXXXX-DNIGHKLLSKMXXXXXXXXX 2234
            H +GDF+P +ELEKFM                        +NIG+++L KM         
Sbjct: 521  HFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGYQMLMKMGWKEGEGLG 580

Query: 2235 XXXXXXADPIMAGDVKQDHLGVGAIQPGEVSSEDDIYEQYKKRMMLGYRHRPNPLNNPRK 2414
                   +P+  G    D  G G  +P E+S EDD YE ++KRMML YR RPNPLNNPR+
Sbjct: 581  TEGQGIKNPVNKGATTIDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRR 640

Query: 2415 QYY 2423
             YY
Sbjct: 641  PYY 643



 Score = 57.0 bits (136), Expect = 4e-07
 Identities = 28/80 (35%), Positives = 41/80 (51%)
 Frame = +3

Query: 1530 APPNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAE 1709
            +PP D   + +A+KLA F+A  G + E I  Q N  +  F FL+D N   Y+YY  +L E
Sbjct: 252  SPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDE 311

Query: 1710 EEKVHAQTKDAHASKIVNSS 1769
              K  A +  +  +   N S
Sbjct: 312  FRKAKAGSTGSFPAPAPNPS 331



 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
 Frame = +3

Query: 1530 APPNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAE 1709
            +PP     R+V +KLA FVA+ G + E +  +    +  F FL DKN  ++ YY  ++AE
Sbjct: 177  SPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAE 236

Query: 1710 EEKVHAQTKDAHASKI----------VNSSTASSIAHTGPQRSSFEQRSNYQTPA-SALY 1856
              K  AQ   A   K+          +    A  IA  GP+  +   ++N +  A S LY
Sbjct: 237  IRK-EAQKPQAATQKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLY 295

>Q8K4Z5:SF3A1_MOUSE Splicing factor 3 subunit 1 - Mus musculus (Mouse)|
          Length = 791

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 28/76 (36%), Positives = 43/76 (56%)
 Frame = +3

Query: 1533 PPNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAEE 1712
            PP +  VR + DK ASFVA+NG +FE   RQ    +  F FL + N   + YY ++++E 
Sbjct: 45   PPPE--VRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL-NPNDPYHAYYRHKVSEF 101

Query: 1713 EKVHAQTKDAHASKIV 1760
            ++  AQ   A   K++
Sbjct: 102  KEGKAQEPSAAIPKVM 117

>Q15459:SF3A1_HUMAN Splicing factor 3 subunit 1 - Homo sapiens (Human)|
          Length = 793

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 28/76 (36%), Positives = 43/76 (56%)
 Frame = +3

Query: 1533 PPNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAEE 1712
            PP +  VR + DK ASFVA+NG +FE   RQ    +  F FL + N   + YY ++++E 
Sbjct: 45   PPPE--VRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFL-NPNDPYHAYYRHKVSEF 101

Query: 1713 EKVHAQTKDAHASKIV 1760
            ++  AQ   A   K++
Sbjct: 102  KEGKAQEPSAAIPKVM 117

>O13900:SA114_SCHPO Pre-mRNA-splicing factor sap114 - Schizosaccharomyces pombe (Fission|
            yeast)
          Length = 481

 Score = 43.1 bits (100), Expect = 0.006
 Identities = 24/76 (31%), Positives = 43/76 (56%)
 Frame = +3

Query: 1551 VRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAEEEKVHAQ 1730
            +R++ DK AS+VA+NG  FE+  RQ    ++ F FL   N   + YY+++L E  +   +
Sbjct: 41   IREIIDKSASYVARNGPAFEEKIRQNEQANTKFAFL-HANDPYHPYYQHKLTEAREGKLK 99

Query: 1731 TKDAHASKIVNSSTAS 1778
               +HA+ +    T++
Sbjct: 100  ---SHATGLSTQKTST 112

>Q8CH09:SFR14_MOUSE Putative splicing factor, arginine/serine-rich 14 - Mus musculus|
            (Mouse)
          Length = 1067

 Score = 41.6 bits (96), Expect = 0.018
 Identities = 26/98 (26%), Positives = 44/98 (44%)
 Frame = +3

Query: 1542 DMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAEEEKV 1721
            D    + A+KLA FVA+ G + E  + + +  +    FL D++ S +K+Y  ++ E    
Sbjct: 764  DAKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQSSSAFKFYREKVLELCPS 823

Query: 1722 HAQTKDAHASKIVNSSTASSIAHTGPQRSSFEQRSNYQ 1835
             +      A   V S TA       PQ    EQ ++ +
Sbjct: 824  ISFQSTGEAGDSVQSPTAGKEGKGEPQEGHPEQEASLE 861



 Score = 33.1 bits (74), Expect = 6.5
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 2178 NIGHKLLSKMXXXXXXXXXXXXXXXADPIMAGDVKQDHLGVGAIQPGEVSSEDDIYEQYK 2357
            N+G ++L KM                +P+  G + +   G+GA  P +   ++D ++ ++
Sbjct: 998  NVGFQMLQKMGWKEGHGLGSLGKGIREPVSVGALSEGE-GLGADGPEQ---KEDTFDVFR 1053

Query: 2358 KRMMLGYRHR 2387
            +RMM  YRH+
Sbjct: 1054 QRMMQMYRHK 1063

>Q8IX01:SFR14_HUMAN Putative splicing factor, arginine/serine-rich 14 - Homo sapiens|
            (Human)
          Length = 1082

 Score = 40.8 bits (94), Expect = 0.031
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +3

Query: 1542 DMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAE 1709
            DM   + A+KLA FVA+ G + E  + + +  +    FL D+N S +K+Y  ++ E
Sbjct: 781  DMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKFYRKKVFE 836

>Q8RXF1:SF3A1_ARATH Probable splicing factor 3 subunit 1 - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 785

 Score = 38.9 bits (89), Expect = 0.12
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 1533 PPNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDY-KYYENRLAE 1709
            PP D  +R + +K A FV+KNG +FE      N  ++ F FL  K+   Y  +Y+++L E
Sbjct: 64   PPPD--IRTIVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFL--KSSDPYHAFYQHKLTE 119

Query: 1710 EEKVHAQTKDAHASKIVNSSTASSIAHTG 1796
                 AQ KD       +  T      TG
Sbjct: 120  ---YRAQNKDGAQGTDDSDGTTDPQLDTG 145

>P12297:SUWA_DROME Protein suppressor of white apricot - Drosophila melanogaster (Fruit|
            fly)
          Length = 963

 Score = 38.5 bits (88), Expect = 0.15
 Identities = 27/73 (36%), Positives = 39/73 (53%)
 Frame = +3

Query: 1536 PNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFLFDKNCSDYKYYENRLAEEE 1715
            P D ++R + DK A++V KNGRQFE+  R K+     F FL   N   Y YY  ++  + 
Sbjct: 476  PKD-SLRHIIDKTATYVIKNGRQFEETLRTKSV--DRFSFLLPAN-EYYPYYLYKVTGD- 530

Query: 1716 KVHAQTKDAHASK 1754
             V A +K+    K
Sbjct: 531  -VDAASKEEKTRK 542

>Q12872:SFRS8_HUMAN Splicing factor, arginine/serine-rich 8 - Homo sapiens (Human)|
          Length = 951

 Score = 37.7 bits (86), Expect = 0.26
 Identities = 22/42 (52%), Positives = 27/42 (64%)
 Frame = +3

Query: 1533 PPNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFL 1658
            PP D  V+ V DKLA +VA+NG +FE   R KN  D  F+FL
Sbjct: 452  PPPD--VQPVIDKLAEYVARNGLKFETSVRAKN--DQRFEFL 489



 Score = 32.7 bits (73), Expect = 8.5
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 1536 PNDMTVRQVADKLASFVAKNGRQFEDITRQKNPGDSPFKFL-FDKNCSDYKYYENRLAEE 1712
            P    +  + ++ ASFV + G QFE + + K   +S F FL FD   + Y  +  +  +E
Sbjct: 203  PPTAKMHAIIERTASFVCRQGAQFEIMLKAKQAPNSQFDFLRFDHYLNPYYKFIQKAMKE 262

Query: 1713 EK--VHAQTKDAHASK 1754
             +  V A+ K     K
Sbjct: 263  GRYTVLAENKSDEKKK 278

>O88200:CLC11_MOUSE C-type lectin domain family 11 member A precursor - Mus musculus|
           (Mouse)
          Length = 328

 Score = 33.1 bits (74), Expect = 6.5
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = -2

Query: 146 WEGGWGGRVT*SRDTARVNQTLERNLVRWVGMGWGIGEERENMA 15
           WEGGWGG +   R+  R +Q L +NL   +G+  G+G E +N+A
Sbjct: 29  WEGGWGGALEEERE--RESQML-KNLQEALGLPTGVGNE-DNLA 68

>P46959:TRM61_YEAST tRNA - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 383

 Score = 32.7 bits (73), Expect = 8.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 2478 AKLVFLRLPSPWLTSPCINSIVSLGCSVGLAYGGSLASFASCI 2350
            A +VFL LP+PW   P ++S++S+   VG      L  F+ CI
Sbjct: 197  ANVVFLDLPAPWDAIPHLDSVISVDEKVG------LCCFSPCI 233


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 454,715,800
Number of extensions: 9606121
Number of successful extensions: 24492
Number of sequences better than 10.0: 14
Number of HSP's gapped: 24377
Number of HSP's successfully gapped: 24
Length of query: 934
Length of database: 100,686,439
Length adjustment: 123
Effective length of query: 811
Effective length of database: 66,948,154
Effective search space: 54294952894
Effective search space used: 54294952894
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)