| Clone Name | FLbaf21o13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001073380.1| Oryza sativa (japonica cultivar-group) Os12g0507700 (Os12g0507700) mRNA, complete cds Length = 489 Score = 188 bits (95), Expect = 7e-44 Identities = 167/191 (87%) Strand = Plus / Minus Query: 1136 ggagagcttgctgtctctgcgtcgccgctcctgtgccagtatgtctgctggaacgttgct 1195 |||||||| || ||||||||||||||||||||| ||||||| |||| ||| | || Sbjct: 446 ggagagctcgccgtctctgcgtcgccgctcctgagccagtacagctgcctgaatgaagcc 387 Query: 1196 gcgctgcttgggacatcctccatgacccactcaaagcccctggggtagtaaatccctgtc 1255 |||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct: 386 gcgctgctggggacatcctccatgacccactcaaagcccttgggatagtagatccctgtt 327 Query: 1256 cttgggtgtggcacccacagtgctgtctctgctgaccttgctgctgttggctgcacccgg 1315 ||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||| Sbjct: 326 cttgggtgtggcacccacaatgctgtctccgctgaccttgcttctgaaggctgcacccgg 267 Query: 1316 ttcgtaaggtt 1326 || ||||||| Sbjct: 266 ctcataaggtt 256 Score = 61.9 bits (31), Expect = 1e-05 Identities = 40/43 (93%) Strand = Plus / Minus Query: 1351 ccggagaagaccagtcgattttgcaattgcactccggcccatc 1393 |||||| ||||||| |||||||||||||||||| ||||||||| Sbjct: 231 ccggagcagaccagccgattttgcaattgcacttcggcccatc 189
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 188 bits (95), Expect = 7e-44 Identities = 167/191 (87%) Strand = Plus / Plus Query: 1136 ggagagcttgctgtctctgcgtcgccgctcctgtgccagtatgtctgctggaacgttgct 1195 |||||||| || ||||||||||||||||||||| ||||||| |||| ||| | || Sbjct: 19536244 ggagagctcgccgtctctgcgtcgccgctcctgagccagtacagctgcctgaatgaagcc 19536303 Query: 1196 gcgctgcttgggacatcctccatgacccactcaaagcccctggggtagtaaatccctgtc 1255 |||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct: 19536304 gcgctgctggggacatcctccatgacccactcaaagcccttgggatagtagatccctgtt 19536363 Query: 1256 cttgggtgtggcacccacagtgctgtctctgctgaccttgctgctgttggctgcacccgg 1315 ||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||| Sbjct: 19536364 cttgggtgtggcacccacaatgctgtctccgctgaccttgcttctgaaggctgcacccgg 19536423 Query: 1316 ttcgtaaggtt 1326 || ||||||| Sbjct: 19536424 ctcataaggtt 19536434 Score = 141 bits (71), Expect = 2e-29 Identities = 155/183 (84%) Strand = Plus / Plus Query: 180 ggtggggggtgcggggttggccttgggttaggatggggctttggaaatgcttatggttgt 239 |||||||| || || ||||| |||||| |||| |||||||| || || || ||||||||| Sbjct: 19535332 ggtgggggatgtggagttggtcttgggctagggtggggcttcggcaaagcgtatggttgt 19535391 Query: 240 caatatcgatcttcaagggtccagtttcagggcattgagtttcagaaaaagtctgaaggg 299 || ||||| || || || ||||||||||||||||||||||||||||| ||| | ||||| Sbjct: 19535392 cagtatcgctcgtctagagtccagtttcagggcattgagtttcagaagaagaccgaagga 19535451 Query: 300 gatgaagcaccaaagcttgtttcgtcagggcttgttgaaaagtctcgtccttatggctag 359 ||||||||| ||| |||||||| ||| || ||||||||| |||||||||||||| ||| Sbjct: 19535452 gatgaagcatcaagccttgtttctccagagcgtgttgaaaaatctcgtccttatggatag 19535511 Query: 360 tat 362 ||| Sbjct: 19535512 tat 19535514 Score = 67.9 bits (34), Expect = 2e-07 Identities = 43/46 (93%) Strand = Plus / Plus Query: 1348 ttaccggagaagaccagtcgattttgcaattgcactccggcccatc 1393 ||||||||| ||||||| |||||||||||||||||| ||||||||| Sbjct: 19536643 ttaccggagcagaccagccgattttgcaattgcacttcggcccatc 19536688 Score = 56.0 bits (28), Expect = 7e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 105 ttcggcgtcggctgcggattcggagtcggatgggggttcggagg 148 |||||| |||| ||||| ||||| |||||||||||||||||||| Sbjct: 19534180 ttcggcatcgggtgcgggttcggcgtcggatgggggttcggagg 19534223 Score = 56.0 bits (28), Expect = 7e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 2446 cttctgttctctc-ttttggtttcagtggaaggcta 2480 ||||||||||||| |||||||||||||||||||||| Sbjct: 19537726 cttctgttctctccttttggtttcagtggaaggcta 19537761 Score = 48.1 bits (24), Expect = 0.17 Identities = 48/55 (87%), Gaps = 2/55 (3%) Strand = Plus / Plus Query: 1460 gatggcagttccctcttggttggtacctctctcctccccaaccctggtatatata 1514 |||||||||||| ||||| ||||||| || |||||||||||||||||| |||| Sbjct: 19536764 gatggcagttccttcttgcttggtac--cttacctccccaaccctggtatttata 19536816
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 188 bits (95), Expect = 7e-44 Identities = 167/191 (87%) Strand = Plus / Plus Query: 1136 ggagagcttgctgtctctgcgtcgccgctcctgtgccagtatgtctgctggaacgttgct 1195 |||||||| || ||||||||||||||||||||| ||||||| |||| ||| | || Sbjct: 68425 ggagagctcgccgtctctgcgtcgccgctcctgagccagtacagctgcctgaatgaagcc 68484 Query: 1196 gcgctgcttgggacatcctccatgacccactcaaagcccctggggtagtaaatccctgtc 1255 |||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct: 68485 gcgctgctggggacatcctccatgacccactcaaagcccttgggatagtagatccctgtt 68544 Query: 1256 cttgggtgtggcacccacagtgctgtctctgctgaccttgctgctgttggctgcacccgg 1315 ||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||| Sbjct: 68545 cttgggtgtggcacccacaatgctgtctccgctgaccttgcttctgaaggctgcacccgg 68604 Query: 1316 ttcgtaaggtt 1326 || ||||||| Sbjct: 68605 ctcataaggtt 68615 Score = 141 bits (71), Expect = 2e-29 Identities = 155/183 (84%) Strand = Plus / Plus Query: 180 ggtggggggtgcggggttggccttgggttaggatggggctttggaaatgcttatggttgt 239 |||||||| || || ||||| |||||| |||| |||||||| || || || ||||||||| Sbjct: 67513 ggtgggggatgtggagttggtcttgggctagggtggggcttcggcaaagcgtatggttgt 67572 Query: 240 caatatcgatcttcaagggtccagtttcagggcattgagtttcagaaaaagtctgaaggg 299 || ||||| || || || ||||||||||||||||||||||||||||| ||| | ||||| Sbjct: 67573 cagtatcgctcgtctagagtccagtttcagggcattgagtttcagaagaagaccgaagga 67632 Query: 300 gatgaagcaccaaagcttgtttcgtcagggcttgttgaaaagtctcgtccttatggctag 359 ||||||||| ||| |||||||| ||| || ||||||||| |||||||||||||| ||| Sbjct: 67633 gatgaagcatcaagccttgtttctccagagcgtgttgaaaaatctcgtccttatggatag 67692 Query: 360 tat 362 ||| Sbjct: 67693 tat 67695 Score = 67.9 bits (34), Expect = 2e-07 Identities = 43/46 (93%) Strand = Plus / Plus Query: 1348 ttaccggagaagaccagtcgattttgcaattgcactccggcccatc 1393 ||||||||| ||||||| |||||||||||||||||| ||||||||| Sbjct: 68824 ttaccggagcagaccagccgattttgcaattgcacttcggcccatc 68869 Score = 56.0 bits (28), Expect = 7e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 105 ttcggcgtcggctgcggattcggagtcggatgggggttcggagg 148 |||||| |||| ||||| ||||| |||||||||||||||||||| Sbjct: 66361 ttcggcatcgggtgcgggttcggcgtcggatgggggttcggagg 66404 Score = 56.0 bits (28), Expect = 7e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 2446 cttctgttctctc-ttttggtttcagtggaaggcta 2480 ||||||||||||| |||||||||||||||||||||| Sbjct: 69907 cttctgttctctccttttggtttcagtggaaggcta 69942 Score = 48.1 bits (24), Expect = 0.17 Identities = 48/55 (87%), Gaps = 2/55 (3%) Strand = Plus / Plus Query: 1460 gatggcagttccctcttggttggtacctctctcctccccaaccctggtatatata 1514 |||||||||||| ||||| ||||||| || |||||||||||||||||| |||| Sbjct: 68945 gatggcagttccttcttgcttggtac--cttacctccccaaccctggtatttata 68997
>ref|NM_001073379.1| Oryza sativa (japonica cultivar-group) Os12g0507600 (Os12g0507600) mRNA, complete cds Length = 574 Score = 141 bits (71), Expect = 2e-29 Identities = 155/183 (84%) Strand = Plus / Plus Query: 180 ggtggggggtgcggggttggccttgggttaggatggggctttggaaatgcttatggttgt 239 |||||||| || || ||||| |||||| |||| |||||||| || || || ||||||||| Sbjct: 237 ggtgggggatgtggagttggtcttgggctagggtggggcttcggcaaagcgtatggttgt 296 Query: 240 caatatcgatcttcaagggtccagtttcagggcattgagtttcagaaaaagtctgaaggg 299 || ||||| || || || ||||||||||||||||||||||||||||| ||| | ||||| Sbjct: 297 cagtatcgctcgtctagagtccagtttcagggcattgagtttcagaagaagaccgaagga 356 Query: 300 gatgaagcaccaaagcttgtttcgtcagggcttgttgaaaagtctcgtccttatggctag 359 ||||||||| ||| |||||||| ||| || ||||||||| |||||||||||||| ||| Sbjct: 357 gatgaagcatcaagccttgtttctccagagcgtgttgaaaaatctcgtccttatggatag 416 Query: 360 tat 362 ||| Sbjct: 417 tat 419 Score = 101 bits (51), Expect = 1e-17 Identities = 87/99 (87%) Strand = Plus / Plus Query: 84 ggccctggcattgggctcggcttcggcgtcggctgcggattcggagtcggatgggggttc 143 ||||| || |||||||| || |||||| |||| ||||| ||||| ||||||||||||||| Sbjct: 58 ggccccgggattgggctggggttcggcatcgggtgcgggttcggcgtcggatgggggttc 117 Query: 144 ggaggaatgcctctgaacgtattcggcttgggcatcggt 182 ||||||||||||||||| | || ||||||||||||||| Sbjct: 118 ggaggaatgcctctgaatatgtttggcttgggcatcggt 156
>dbj|AK070613.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063G03, full insert sequence Length = 575 Score = 141 bits (71), Expect = 2e-29 Identities = 155/183 (84%) Strand = Plus / Plus Query: 180 ggtggggggtgcggggttggccttgggttaggatggggctttggaaatgcttatggttgt 239 |||||||| || || ||||| |||||| |||| |||||||| || || || ||||||||| Sbjct: 238 ggtgggggatgtggagttggtcttgggctagggtggggcttcggcaaagcgtatggttgt 297 Query: 240 caatatcgatcttcaagggtccagtttcagggcattgagtttcagaaaaagtctgaaggg 299 || ||||| || || || ||||||||||||||||||||||||||||| ||| | ||||| Sbjct: 298 cagtatcgctcgtctagagtccagtttcagggcattgagtttcagaagaagaccgaagga 357 Query: 300 gatgaagcaccaaagcttgtttcgtcagggcttgttgaaaagtctcgtccttatggctag 359 ||||||||| ||| |||||||| ||| || ||||||||| |||||||||||||| ||| Sbjct: 358 gatgaagcatcaagccttgtttctccagagcgtgttgaaaaatctcgtccttatggatag 417 Query: 360 tat 362 ||| Sbjct: 418 tat 420 Score = 101 bits (51), Expect = 1e-17 Identities = 87/99 (87%) Strand = Plus / Plus Query: 84 ggccctggcattgggctcggcttcggcgtcggctgcggattcggagtcggatgggggttc 143 ||||| || |||||||| || |||||| |||| ||||| ||||| ||||||||||||||| Sbjct: 59 ggccccgggattgggctggggttcggcatcgggtgcgggttcggcgtcggatgggggttc 118 Query: 144 ggaggaatgcctctgaacgtattcggcttgggcatcggt 182 ||||||||||||||||| | || ||||||||||||||| Sbjct: 119 ggaggaatgcctctgaatatgtttggcttgggcatcggt 157
>dbj|AK058298.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F07, full insert sequence Length = 248 Score = 58.0 bits (29), Expect = 2e-04 Identities = 59/69 (85%) Strand = Plus / Plus Query: 294 gaaggggatgaagcaccaaagcttgtttcgtcagggcttgttgaaaagtctcgtccttat 353 ||||| ||||||||| ||| |||||||| ||| || ||||||||| |||||||||||| Sbjct: 13 gaaggagatgaagcatcaagccttgtttctccagagcgtgttgaaaaatctcgtccttat 72 Query: 354 ggctagtat 362 || |||||| Sbjct: 73 ggatagtat 81
>emb|CR855160.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0714H04, complete sequence Length = 106506 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 71292 tctatatctatacctaataaaaa 71270
>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete sequence Length = 110682 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 65931 tctatatctatacctaataaaaa 65953
>gb|AC182492.2| Pan troglodytes BAC clone CH251-294F23 from chromosome 5, complete sequence Length = 179551 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 164669 ttttttcttttctatatctatac 164647
>gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0013J21, complete sequence Length = 155290 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 102829 tctatatctatacctaataaaaa 102807
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC nbxb0045B21, complete sequence Length = 152397 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 16581 tctatatctatacctaataaaaa 16603
>gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617A08, complete sequence Length = 144781 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 6329 tctatatctatacctaataaaaa 6307
>gb|AC140134.2| Homo sapiens chromosome 5 clone RP11-1319K7, complete sequence Length = 217820 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 11492 ttttttcttttctatatctatac 11470
>gb|AC139776.2| Homo sapiens chromosome 5 clone RP11-1005E12, complete sequence Length = 217545 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 148487 ttttttcttttctatatctatac 148465
>gb|AC139495.2| Homo sapiens chromosome 5 clone RP11-848G14, complete sequence Length = 185911 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 175961 ttttttcttttctatatctatac 175983
>gb|AC139272.3| Homo sapiens chromosome 5 clone RP11-589F5, complete sequence Length = 179723 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 148925 ttttttcttttctatatctatac 148947
>gb|AC138866.2| Homo sapiens chromosome 5 clone RP11-1415C14, complete sequence Length = 213824 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 47752 ttttttcttttctatatctatac 47774
>gb|AC146949.1| Homo sapiens chromosome 5 clone RP11-1198D22, complete sequence Length = 205574 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 157278 ttttttcttttctatatctatac 157256
>gb|AC145138.2| Homo sapiens chromosome 5 clone RP11-1280N14, complete sequence Length = 199372 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 165760 ttttttcttttctatatctatac 165782
>gb|AC145034.2| Homo sapiens chromosome 5 clone RP11-1414O21, complete sequence Length = 210205 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 143461 ttttttcttttctatatctatac 143483
>gb|AC139505.2| Homo sapiens chromosome 5 clone RP11-910M8, complete sequence Length = 202970 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 15397 ttttttcttttctatatctatac 15375
>gb|AC145144.2| Homo sapiens chromosome 5 clone RP11-1432L1, complete sequence Length = 211638 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 166000 ttttttcttttctatatctatac 165978
>gb|AC139510.3| Homo sapiens chromosome 5 clone RP11-977J23, complete sequence Length = 179309 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 132782 ttttttcttttctatatctatac 132760
>gb|AC146335.1| Homo sapiens chromosome 5 clone RP11-1305N21, complete sequence Length = 194399 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 39212 ttttttcttttctatatctatac 39190
>gb|AC139277.2| Homo sapiens chromosome 5 clone RP11-619K7, complete sequence Length = 199996 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 105283 ttttttcttttctatatctatac 105261
>gb|AC138911.2| Homo sapiens chromosome 5 clone RP11-618O22, complete sequence Length = 191992 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 25654 ttttttcttttctatatctatac 25676
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 2124689 tctatatctatacctaataaaaa 2124667
>gb|AC132802.2| Homo sapiens chromosome 5 clone CTC-273M15, complete sequence Length = 162703 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 32545 ttttttcttttctatatctatac 32567
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 22680 tctatatctatacctaataaaaa 22702
>gb|AC068797.29| Homo sapiens 12 BAC RP1-81P11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 136257 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1877 tttctgtgctaaaatctctgctt 1899 ||||||||||||||||||||||| Sbjct: 104255 tttctgtgctaaaatctctgctt 104277
>gb|AC109487.3| Homo sapiens chromosome 5 clone RP11-551B22, complete sequence Length = 155249 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 16193 ttttttcttttctatatctatac 16171
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 2124689 tctatatctatacctaataaaaa 2124667 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 13847955 tctatatctatacctaataaaaa 13847977
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 5125070 tctatatctatacctaataaaaa 5125092 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 16294553 tctatatctatacctaataaaaa 16294531 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 16763436 tctatatctatacctaataaaaa 16763458
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 4384705 tctatatctatacctaataaaaa 4384683
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 2731490 tctatatctatacctaataaaaa 2731512 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 6341767 tctatatctatacctaataaaaa 6341789
>emb|AL008629.9|HS197O17 Human DNA sequence from clone RP1-197O17 on chromosome Xq25-26.3 Contains a pseudogene similar to part of SMT3 suppressor of mif two 3 (yeast), the 5' end of gene LOC286467 and a myofibrillogenesis regulator 1 (MR-1) (FKSG19) pseudogene, complete sequence Length = 161812 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2655 atgagatcattttttcttttcta 2677 ||||||||||||||||||||||| Sbjct: 10248 atgagatcattttttcttttcta 10270
>gb|AC010217.6| Homo sapiens chromosome 5 clone CTC-202F24, complete sequence Length = 169137 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 142155 ttttttcttttctatatctatac 142177
>gb|AC010237.8|AC010237 Homo sapiens chromosome 5 clone CTC-348J20, complete sequence Length = 168814 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 91617 ttttttcttttctatatctatac 91595
>gb|AC022119.4|AC022119 Homo sapiens chromosome 5 clone CTC-566F17, complete sequence Length = 155974 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 129055 ttttttcttttctatatctatac 129077
>emb|AL009030.15|HS28I24 Human DNA sequence from clone RP1-28I24 on chromosome 5 Contains the 5' end of the spinal muscular dystrophy region gene (SMA3), two beta-glucuronidase pseudogenes and two novel pseudogenes containing four membrane protein-like protein repeats, one CpG islands, ESTs, GSSs and STSs, complete sequence Length = 222252 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 152842 ttttttcttttctatatctatac 152820
>gb|AC139500.2| Homo sapiens chromosome 5 clone RP11-864E4, complete sequence Length = 194350 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 169343 ttttttcttttctatatctatac 169321
>gb|AC138940.3| Homo sapiens chromosome 5 clone RP11-704G19, complete sequence Length = 182305 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 46904 ttttttcttttctatatctatac 46926
>gb|AC139834.2| Homo sapiens chromosome 5 clone RP11-974F13, complete sequence Length = 185457 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 73956 ttttttcttttctatatctatac 73934
>gb|AC108108.2| Homo sapiens chromosome 5 clone RP11-260M21, complete sequence Length = 173597 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 143514 ttttttcttttctatatctatac 143536
>gb|AC139494.2| Homo sapiens chromosome 5 clone RP11-846E15, complete sequence Length = 210288 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 16209 ttttttcttttctatatctatac 16187
>gb|AC118459.2| Homo sapiens chromosome 5 clone RP11-124L9, complete sequence Length = 146061 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 104672 ttttttcttttctatatctatac 104650
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 3336 tctatatctatacctaataaaaa 3358
>dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0426E02 Length = 166985 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 405 tctatatctatacctaataaaaa 383
>dbj|AP005464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1027A11 Length = 169506 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 139346 tctatatctatacctaataaaaa 139368
>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0020B10 Length = 136175 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 74834 tctatatctatacctaataaaaa 74856
>dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1104G07 Length = 119643 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 84731 tctatatctatacctaataaaaa 84709
>gb|AC105734.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0050N02, complete sequence Length = 133373 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Plus Query: 2674 tctatatctatacctaataaaaa 2696 ||||||||||||||||||||||| Sbjct: 76299 tctatatctatacctaataaaaa 76321
>gb|AC131392.2| Homo sapiens chromosome 5 clone RP11-98J23, complete sequence Length = 154803 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 147711 ttttttcttttctatatctatac 147689
>gb|AC008783.5|AC008783 Homo sapiens chromosome 5 clone CTD-2027E7, complete sequence Length = 100184 Score = 46.1 bits (23), Expect = 0.66 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2664 ttttttcttttctatatctatac 2686 ||||||||||||||||||||||| Sbjct: 43726 ttttttcttttctatatctatac 43704
>gb|BC124893.1| Xenopus laevis cDNA clone MGC:154536 IMAGE:8320733, complete cds Length = 2387 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 775 tgtattgttttttctgaagatt 796 |||||||||||||||||||||| Sbjct: 2244 tgtattgttttttctgaagatt 2265
>gb|AC125377.5| Mus musculus BAC clone RP23-27C10 from chromosome 1, complete sequence Length = 227511 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 689 atgtgcataaaaatattgagca 710 |||||||||||||||||||||| Sbjct: 132778 atgtgcataaaaatattgagca 132799
>gb|AC158615.6| Mus musculus 10 BAC RP23-256B24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217393 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 910 agaatgcaatatagaagattaa 931 |||||||||||||||||||||| Sbjct: 197666 agaatgcaatatagaagattaa 197687
>dbj|AB183488.1| Oryzias latipes DNA, MHC class I region Length = 540982 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 549 taatgttgtacattaacatttt 570 |||||||||||||||||||||| Sbjct: 17333 taatgttgtacattaacatttt 17312
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 2.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1958 gagaagcaactgacatgtggacccca 1983 |||||||||||||||||||| ||||| Sbjct: 4087316 gagaagcaactgacatgtgggcccca 4087291
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2675 ctatatctatacctaataaaaa 2696 |||||||||||||||||||||| Sbjct: 29109257 ctatatctatacctaataaaaa 29109236
>gb|AC093925.5| Genomic sequence for Mus musculus, clone RP23-304H5, complete sequence Length = 227242 Score = 44.1 bits (22), Expect = 2.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1647 acttgagcagaggtttgagcttgatt 1672 |||||||||||||||||| ||||||| Sbjct: 17152 acttgagcagaggtttgatcttgatt 17127
>dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region Length = 425935 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 549 taatgttgtacattaacatttt 570 |||||||||||||||||||||| Sbjct: 1361 taatgttgtacattaacatttt 1340
>emb|AL731594.5|OSJN00234 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032N05, complete sequence Length = 159486 Score = 44.1 bits (22), Expect = 2.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1958 gagaagcaactgacatgtggacccca 1983 |||||||||||||||||||| ||||| Sbjct: 68674 gagaagcaactgacatgtgggcccca 68649
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2675 ctatatctatacctaataaaaa 2696 |||||||||||||||||||||| Sbjct: 69623 ctatatctatacctaataaaaa 69602
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2671 ttttctatatctatacctaata 2692 |||||||||||||||||||||| Sbjct: 43942 ttttctatatctatacctaata 43921
>gb|AC153933.3| Mus musculus 10 BAC RP24-282I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179847 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 910 agaatgcaatatagaagattaa 931 |||||||||||||||||||||| Sbjct: 87154 agaatgcaatatagaagattaa 87175
>gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, complete sequence Length = 207234 Score = 44.1 bits (22), Expect = 2.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1119 tgccgtcggttgacataggagagctt 1144 |||||| ||||||||||||||||||| Sbjct: 179271 tgccgtgggttgacataggagagctt 179246
>emb|AL611984.15| Mouse DNA sequence from clone RP23-416J8 on chromosome 4, complete sequence Length = 209904 Score = 44.1 bits (22), Expect = 2.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 717 tgaactcatgactcccctgcat 738 |||||||||||||||||||||| Sbjct: 101658 tgaactcatgactcccctgcat 101637 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 534,355,572 Number of extensions: 29821155 Number of successful extensions: 167084 Number of sequences better than 10.0: 68 Number of HSP's gapped: 167082 Number of HSP's successfully gapped: 88 Length of query: 2696 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2673 Effective length of database: 18,503,978,556 Effective search space: 49461134680188 Effective search space used: 49461134680188 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)