ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf21j08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q0DAE4:GRXC8_ORYSJ Glutaredoxin-C8 precursor - Oryza sativa subs... 39 0.038
2Q9UR09:PSU1_SCHPO Cell wall synthesis protein psu1 precursor - S... 35 0.55
3P0ACA9:YLIJ_SHIFL Uncharacterized GST-like protein yliJ - Shigel... 33 2.7
4P0ACA7:YLIJ_ECOLI Uncharacterized GST-like protein yliJ - Escher... 33 2.7
5P0ACA8:YLIJ_ECOL6 Uncharacterized GST-like protein yliJ - Escher... 33 2.7
6P0AC62:GLRX3_ECOLI Glutaredoxin-3 - Escherichia coli 32 6.1
7P0AC63:GLRX3_ECOL6 Glutaredoxin-3 - Escherichia coli O6 32 6.1
8P0AC64:GLRX3_ECO57 Glutaredoxin-3 - Escherichia coli O157:H7 32 6.1

>Q0DAE4:GRXC8_ORYSJ Glutaredoxin-C8 precursor - Oryza sativa subsp. japonica (Rice)|
          Length = 136
 Score = 39.3 bits (90), Expect = 0.038
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
 Frame = +1

Query: 388 VATSSLSSLARLPWGSSVAASSTENITAPTSALTLQLYEFEACPFCRRVREAMTELDLSA 567
           +A ++L +LA L   +S  AS +  + +   A  + ++    CP+CRR +    EL+L  
Sbjct: 11  MAAAALIALAALGSAASGTASKSSFVKSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKK 70

Query: 568 EVYPCP----KGSLRHRDVVRKIGGKEQFPL-------LVDASTGVMMYESGDIVKYL 708
           E Y       +     +D +  + G+   P        L  +   V  YESG + K L
Sbjct: 71  EPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128



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>Q9UR09:PSU1_SCHPO Cell wall synthesis protein psu1 precursor - Schizosaccharomyces|
           pombe (Fission yeast)
          Length = 417

 Score = 35.4 bits (80), Expect = 0.55
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
 Frame = +1

Query: 226 ALTLIRAQPPSAEQGGNTETTSA-------PASSSVLSFLCPLLKFFGGGDPSQERND-I 381
           A++   A   +A   G+ ETTS+        ASSSV + + P+         +   +  +
Sbjct: 54  AISTNGAAKEAATAAGDAETTSSVAASVTPAASSSVAASVTPVASSSVAASVTPVSSSAV 113

Query: 382 VEVATSSLSSLARLPWGSSVAASSTENITAPTSA 483
           V+ ATS+ +S + +P  SSV ASS+E  ++ TS+
Sbjct: 114 VDSATSAAASSSVIPTSSSVVASSSEVASSTTSS 147



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>P0ACA9:YLIJ_SHIFL Uncharacterized GST-like protein yliJ - Shigella flexneri|
          Length = 208

 Score = 33.1 bits (74), Expect = 2.7
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = +1

Query: 643 PLLVDASTGVMMYESGDIVKYLFRQYGQGK----SPSFGLLESTIFTGWV-PTLLRAGRG 807
           PLL D  + ++++ES  IV+YL  QYGQ +    SP+    E+  +  W   TL  A RG
Sbjct: 54  PLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPA-RRAEAEKWMDWANQTLSNAHRG 112

Query: 808 MTM 816
           + M
Sbjct: 113 ILM 115



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>P0ACA7:YLIJ_ECOLI Uncharacterized GST-like protein yliJ - Escherichia coli|
          Length = 208

 Score = 33.1 bits (74), Expect = 2.7
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = +1

Query: 643 PLLVDASTGVMMYESGDIVKYLFRQYGQGK----SPSFGLLESTIFTGWV-PTLLRAGRG 807
           PLL D  + ++++ES  IV+YL  QYGQ +    SP+    E+  +  W   TL  A RG
Sbjct: 54  PLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPA-RRAEAEKWMDWANQTLSNAHRG 112

Query: 808 MTM 816
           + M
Sbjct: 113 ILM 115



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>P0ACA8:YLIJ_ECOL6 Uncharacterized GST-like protein yliJ - Escherichia coli O6|
          Length = 208

 Score = 33.1 bits (74), Expect = 2.7
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = +1

Query: 643 PLLVDASTGVMMYESGDIVKYLFRQYGQGK----SPSFGLLESTIFTGWV-PTLLRAGRG 807
           PLL D  + ++++ES  IV+YL  QYGQ +    SP+    E+  +  W   TL  A RG
Sbjct: 54  PLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPA-RRAEAEKWMDWANQTLSNAHRG 112

Query: 808 MTM 816
           + M
Sbjct: 113 ILM 115



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>P0AC62:GLRX3_ECOLI Glutaredoxin-3 - Escherichia coli|
          Length = 83

 Score = 32.0 bits (71), Expect = 6.1
 Identities = 11/57 (19%), Positives = 29/57 (50%)
 Frame = +1

Query: 490 LQLYEFEACPFCRRVREAMTELDLSAEVYPCPKGSLRHRDVVRKIGGKEQFPLLVDA 660
           +++Y  E CP+C R +  ++   +S +  P    + +  +++++ G      + +DA
Sbjct: 4   VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDA 60



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>P0AC63:GLRX3_ECOL6 Glutaredoxin-3 - Escherichia coli O6|
          Length = 83

 Score = 32.0 bits (71), Expect = 6.1
 Identities = 11/57 (19%), Positives = 29/57 (50%)
 Frame = +1

Query: 490 LQLYEFEACPFCRRVREAMTELDLSAEVYPCPKGSLRHRDVVRKIGGKEQFPLLVDA 660
           +++Y  E CP+C R +  ++   +S +  P    + +  +++++ G      + +DA
Sbjct: 4   VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDA 60



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>P0AC64:GLRX3_ECO57 Glutaredoxin-3 - Escherichia coli O157:H7|
          Length = 83

 Score = 32.0 bits (71), Expect = 6.1
 Identities = 11/57 (19%), Positives = 29/57 (50%)
 Frame = +1

Query: 490 LQLYEFEACPFCRRVREAMTELDLSAEVYPCPKGSLRHRDVVRKIGGKEQFPLLVDA 660
           +++Y  E CP+C R +  ++   +S +  P    + +  +++++ G      + +DA
Sbjct: 4   VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDA 60


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 231,333,984
Number of extensions: 5313166
Number of successful extensions: 15711
Number of sequences better than 10.0: 8
Number of HSP's gapped: 15701
Number of HSP's successfully gapped: 8
Length of query: 446
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 330
Effective length of database: 68,868,219
Effective search space: 22726512270
Effective search space used: 22726512270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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