ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf21h16 |
|---|---|
| Clone Library Name | barley_pub |
>Q6GFF2:PCRA_STAAR ATP-dependent DNA helicase pcrA - Staphylococcus aureus (strain| MRSA252) Length = 730 Score = 276 bits (705), Expect = 6e-73 Identities = 221/737 (29%), Positives = 364/737 (49%), Gaps = 16/737 (2%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTA 1160 L+ +N +Q EA PL+I+AG GSGKT + R+ LL E +SP N+LA+TFT Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 1161 AASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIV 1340 AA EM++R+ +VG A+ I +STFHS C+++ R A+++G F I Q+ I Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122 Query: 1341 EAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG--- 1511 D +K + D K K + + ++ ++ K+ +TP + +K+ Sbjct: 123 ---------------DVLKNENIDSK---KFEPRMFIGAISNLKNELKTPADAQKEATDY 164 Query: 1512 -DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDT 1688 A++ Y L ALD+ D I ++I L + PEV + Q Q I VDE+QDT Sbjct: 165 HSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDT 224 Query: 1689 SAMQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRS 1865 + QY L+KLLAS ++ +VGD DQSI+ + GAD+ SF +D+P I L +NYRS Sbjct: 225 NKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRS 284 Query: 1866 TRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSS 2045 T+ I+ AA +I+NN+ R K + T N +G KI E +E + FVI +I++ Sbjct: 285 TKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMK---HQ 340 Query: 2046 AEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTLPG 2222 G+ + +A+LYR + + +F +P+ V G FY +K IK +++ LR Sbjct: 341 RNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANS 400 Query: 2223 CDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRA-- 2396 DD ++ + + G ++ V+ +L S A + A G K+ Sbjct: 401 NDDISLQRIINVPKRGVGPSS---VEKVQNYALQNNISMFDALGE---ADFIGLSKKVTQ 454 Query: 2397 QITQGRKVLSTLYSLSKFVEREQSVSAIISSAG--NMLPQQYLLEKRAVIDNDGGKLLNE 2570 + +++ +L +F+E + V ++ +G ML ++ LE R+ ++N Sbjct: 455 ECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLEN-------- 506 Query: 2571 DNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRK 2750 + +F+S E+ +L F+ +SL + + Sbjct: 507 --------------IDEFMSVPKDYEENTPLEEQ-----SLINFLTDLSLVADID----E 543 Query: 2751 EENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVA 2930 + +N +TL T+H +KGLE+ +VFI+ + +S P + E ++EERR+ YVA Sbjct: 544 ADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKS---EGDHEMQEERRICYVA 600 Query: 2931 MTRARKKLYILHVT---IDSHRQLLPPSRFLREIPGHLLD--IQGEGAAIKYHGQPSGDI 3095 +TRA + LYI H T + Q PSRFL+EIP LL+ G+ I+ +P Sbjct: 601 ITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKR 660 Query: 3096 SFDHAEGETSTEKPIAN 3146 F ++ TST+K +++ Sbjct: 661 GF--SQRTTSTKKQVSS 675
>P64319:PCRA_STAAN ATP-dependent DNA helicase pcrA - Staphylococcus aureus (strain N315)| Length = 730 Score = 275 bits (703), Expect = 1e-72 Identities = 221/737 (29%), Positives = 364/737 (49%), Gaps = 16/737 (2%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTA 1160 L+ +N +Q EA PL+I+AG GSGKT + R+ LL E +SP N+LA+TFT Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 1161 AASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIV 1340 AA EM++R+ +VG A+ I +STFHS C+++ R A+++G F I Q+ I Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122 Query: 1341 EAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG--- 1511 D +K + D K K + + ++ ++ K+ +TP + +K+ Sbjct: 123 ---------------DVLKNENIDSK---KFEPRMFIGAISNLKNELKTPADAQKEATDY 164 Query: 1512 -DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDT 1688 A++ Y L ALD+ D I ++I L + PEV + Q Q I VDE+QDT Sbjct: 165 HSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDT 224 Query: 1689 SAMQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRS 1865 + QY L+KLLAS ++ +VGD DQSI+ + GAD+ SF +D+P I L +NYRS Sbjct: 225 NKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRS 284 Query: 1866 TRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSS 2045 T+ I+ AA +I+NN+ R K + T N +G KI E +E + FVI +I++ Sbjct: 285 TKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMK---HQ 340 Query: 2046 AEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTLPG 2222 G+ + +A+LYR + + +F +P+ V G FY +K IK +++ LR Sbjct: 341 RNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANS 400 Query: 2223 CDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRA-- 2396 DD ++ + + G ++ V+ +L S A + A G K+ Sbjct: 401 NDDISLQRIINVPKRGVGPSS---VEKVQNYALQNNISMFDALGE---ADFIGLSKKVTQ 454 Query: 2397 QITQGRKVLSTLYSLSKFVEREQSVSAIISSAG--NMLPQQYLLEKRAVIDNDGGKLLNE 2570 + +++ +L +F+E + V ++ +G ML ++ LE R+ ++N Sbjct: 455 ECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLEN-------- 506 Query: 2571 DNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRK 2750 + +F+S E+ +L F+ +SL + + Sbjct: 507 --------------IDEFMSVPKDYEENTPLEEQ-----SLINFLTDLSLVADID----E 543 Query: 2751 EENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVA 2930 + +N +TL T+H +KGLE+ +VFI+ + +S P + E ++EERR+ YVA Sbjct: 544 ADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIK---SEDDHEMQEERRICYVA 600 Query: 2931 MTRARKKLYILHVT---IDSHRQLLPPSRFLREIPGHLLD--IQGEGAAIKYHGQPSGDI 3095 +TRA + LYI H T + Q PSRFL+EIP LL+ G+ I+ +P Sbjct: 601 ITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKR 660 Query: 3096 SFDHAEGETSTEKPIAN 3146 F ++ TST+K +++ Sbjct: 661 GF--SQRTTSTKKQVSS 675
>P64318:PCRA_STAAM ATP-dependent DNA helicase pcrA - Staphylococcus aureus (strain Mu50| / ATCC 700699) Length = 730 Score = 275 bits (703), Expect = 1e-72 Identities = 221/737 (29%), Positives = 364/737 (49%), Gaps = 16/737 (2%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTA 1160 L+ +N +Q EA PL+I+AG GSGKT + R+ LL E +SP N+LA+TFT Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 1161 AASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIV 1340 AA EM++R+ +VG A+ I +STFHS C+++ R A+++G F I Q+ I Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122 Query: 1341 EAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG--- 1511 D +K + D K K + + ++ ++ K+ +TP + +K+ Sbjct: 123 ---------------DVLKNENIDSK---KFEPRMFIGAISNLKNELKTPADAQKEATDY 164 Query: 1512 -DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDT 1688 A++ Y L ALD+ D I ++I L + PEV + Q Q I VDE+QDT Sbjct: 165 HSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDT 224 Query: 1689 SAMQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRS 1865 + QY L+KLLAS ++ +VGD DQSI+ + GAD+ SF +D+P I L +NYRS Sbjct: 225 NKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRS 284 Query: 1866 TRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSS 2045 T+ I+ AA +I+NN+ R K + T N +G KI E +E + FVI +I++ Sbjct: 285 TKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMK---HQ 340 Query: 2046 AEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTLPG 2222 G+ + +A+LYR + + +F +P+ V G FY +K IK +++ LR Sbjct: 341 RNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANS 400 Query: 2223 CDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRA-- 2396 DD ++ + + G ++ V+ +L S A + A G K+ Sbjct: 401 NDDISLQRIINVPKRGVGPSS---VEKVQNYALQNNISMFDALGE---ADFIGLSKKVTQ 454 Query: 2397 QITQGRKVLSTLYSLSKFVEREQSVSAIISSAG--NMLPQQYLLEKRAVIDNDGGKLLNE 2570 + +++ +L +F+E + V ++ +G ML ++ LE R+ ++N Sbjct: 455 ECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLEN-------- 506 Query: 2571 DNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRK 2750 + +F+S E+ +L F+ +SL + + Sbjct: 507 --------------IDEFMSVPKDYEENTPLEEQ-----SLINFLTDLSLVADID----E 543 Query: 2751 EENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVA 2930 + +N +TL T+H +KGLE+ +VFI+ + +S P + E ++EERR+ YVA Sbjct: 544 ADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIK---SEDDHEMQEERRICYVA 600 Query: 2931 MTRARKKLYILHVT---IDSHRQLLPPSRFLREIPGHLLD--IQGEGAAIKYHGQPSGDI 3095 +TRA + LYI H T + Q PSRFL+EIP LL+ G+ I+ +P Sbjct: 601 ITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKR 660 Query: 3096 SFDHAEGETSTEKPIAN 3146 F ++ TST+K +++ Sbjct: 661 GF--SQRTTSTKKQVSS 675
>Q8NVT1:PCRA_STAAW ATP-dependent DNA helicase pcrA - Staphylococcus aureus (strain MW2)| Length = 730 Score = 274 bits (701), Expect = 2e-72 Identities = 221/735 (30%), Positives = 362/735 (49%), Gaps = 16/735 (2%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTA 1160 L+ +N +Q EA PL+I+AG GSGKT + R+ LL E +SP N+LA+TFT Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 1161 AASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIV 1340 AA EM++R+ +VG A+ I +STFHS C+++ R A+++G F I Q+ I Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122 Query: 1341 EAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG--- 1511 D +K + D K K + + ++ ++ K+ +TP + +K+ Sbjct: 123 ---------------DVLKNENIDSK---KFEPRMFIGAISNLKNELKTPADAQKEATDY 164 Query: 1512 -DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDT 1688 A++ Y L ALD+ D I ++I L + PEV + Q Q I VDE+QDT Sbjct: 165 HSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDT 224 Query: 1689 SAMQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRS 1865 + QY L+KLLAS ++ +VGD DQSI+ + GAD+ SF +D+P I L +NYRS Sbjct: 225 NKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRS 284 Query: 1866 TRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSS 2045 T+ I+ AA +I+NN+ R K + T N +G KI E +E + FVI +I++ Sbjct: 285 TKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMK---HQ 340 Query: 2046 AEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTLPG 2222 G+ + +A+LYR + + +F +P+ V G FY +K IK +++ LR Sbjct: 341 RNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANS 400 Query: 2223 CDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRA-- 2396 DD ++ + + G ++ V+ +L S A + A G K+ Sbjct: 401 NDDISLQRIINVPKRGVGPSS---VEKVQNYALQNNISMFDALGE---ADFIGLSKKVTQ 454 Query: 2397 QITQGRKVLSTLYSLSKFVEREQSVSAIISSAG--NMLPQQYLLEKRAVIDNDGGKLLNE 2570 + +++ +L +F+E + V ++ +G ML ++ LE R+ ++N Sbjct: 455 ECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLEN-------- 506 Query: 2571 DNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRK 2750 + +F+S E+ +L F+ +SL + + Sbjct: 507 --------------IDEFMSVPKDYEENTPLEEQ-----SLINFLTDLSLVADID----E 543 Query: 2751 EENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVA 2930 + +N +TL T+H +KGLE+ +VFI+ + +S P + E ++EERR+ YVA Sbjct: 544 ADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIK---SEDDHEMQEERRICYVA 600 Query: 2931 MTRARKKLYILHVT---IDSHRQLLPPSRFLREIPGHLLD--IQGEGAAIKYHGQPSGDI 3095 +TRA + LYI H T + Q PSRFL+EIP LL+ G+ I+ +P Sbjct: 601 ITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKR 660 Query: 3096 SFDHAEGETSTEKPI 3140 F ++ TST+K + Sbjct: 661 GF--SQRTTSTKKQV 673
>Q6G828:PCRA_STAAS ATP-dependent DNA helicase pcrA - Staphylococcus aureus (strain| MSSA476) Length = 730 Score = 274 bits (701), Expect = 2e-72 Identities = 221/735 (30%), Positives = 362/735 (49%), Gaps = 16/735 (2%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTA 1160 L+ +N +Q EA PL+I+AG GSGKT + R+ LL E +SP N+LA+TFT Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 1161 AASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIV 1340 AA EM++R+ +VG A+ I +STFHS C+++ R A+++G F I Q+ I Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122 Query: 1341 EAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG--- 1511 D +K + D K K + + ++ ++ K+ +TP + +K+ Sbjct: 123 ---------------DVLKNENIDSK---KFEPRMFIGAISNLKNELKTPADAQKEATDY 164 Query: 1512 -DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDT 1688 A++ Y L ALD+ D I ++I L + PEV + Q Q I VDE+QDT Sbjct: 165 HSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDT 224 Query: 1689 SAMQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRS 1865 + QY L+KLLAS ++ +VGD DQSI+ + GAD+ SF +D+P I L +NYRS Sbjct: 225 NKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRS 284 Query: 1866 TRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSS 2045 T+ I+ AA +I+NN+ R K + T N +G KI E +E + FVI +I++ Sbjct: 285 TKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMK---HQ 340 Query: 2046 AEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTLPG 2222 G+ + +A+LYR + + +F +P+ V G FY +K IK +++ LR Sbjct: 341 RNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANS 400 Query: 2223 CDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRA-- 2396 DD ++ + + G ++ V+ +L S A + A G K+ Sbjct: 401 NDDISLQRIINVPKRGVGPSS---VEKVQNYALQNNISMFDALGE---ADFIGLSKKVTQ 454 Query: 2397 QITQGRKVLSTLYSLSKFVEREQSVSAIISSAG--NMLPQQYLLEKRAVIDNDGGKLLNE 2570 + +++ +L +F+E + V ++ +G ML ++ LE R+ ++N Sbjct: 455 ECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLEN-------- 506 Query: 2571 DNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRK 2750 + +F+S E+ +L F+ +SL + + Sbjct: 507 --------------IDEFMSVPKDYEENTPLEEQ-----SLINFLTDLSLVADID----E 543 Query: 2751 EENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVA 2930 + +N +TL T+H +KGLE+ +VFI+ + +S P + E ++EERR+ YVA Sbjct: 544 ADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIK---SEDDHEMQEERRICYVA 600 Query: 2931 MTRARKKLYILHVT---IDSHRQLLPPSRFLREIPGHLLD--IQGEGAAIKYHGQPSGDI 3095 +TRA + LYI H T + Q PSRFL+EIP LL+ G+ I+ +P Sbjct: 601 ITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKR 660 Query: 3096 SFDHAEGETSTEKPI 3140 F ++ TST+K + Sbjct: 661 GF--SQRTTSTKKQV 673
>Q5HEL7:PCRA_STAAC ATP-dependent DNA helicase pcrA - Staphylococcus aureus (strain COL)| Length = 730 Score = 274 bits (701), Expect = 2e-72 Identities = 221/735 (30%), Positives = 362/735 (49%), Gaps = 16/735 (2%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTA 1160 L+ +N +Q EA PL+I+AG GSGKT + R+ LL E +SP N+LA+TFT Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 1161 AASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIV 1340 AA EM++R+ +VG A+ I +STFHS C+++ R A+++G F I Q+ I Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122 Query: 1341 EAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG--- 1511 D +K + D K K + + ++ ++ K+ +TP + +K+ Sbjct: 123 ---------------DVLKNENIDSK---KFEPRMFIGAISNLKNELKTPADAQKEATDY 164 Query: 1512 -DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDT 1688 A++ Y L ALD+ D I ++I L + PEV + Q Q I VDE+QDT Sbjct: 165 HSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDT 224 Query: 1689 SAMQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRS 1865 + QY L+KLLAS ++ +VGD DQSI+ + GAD+ SF +D+P I L +NYRS Sbjct: 225 NKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRS 284 Query: 1866 TRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSS 2045 T+ I+ AA +I+NN+ R K + T N +G KI E +E + FVI +I++ Sbjct: 285 TKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMK---HQ 340 Query: 2046 AEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTLPG 2222 G+ + +A+LYR + + +F +P+ V G FY +K IK +++ LR Sbjct: 341 RNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANS 400 Query: 2223 CDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRA-- 2396 DD ++ + + G ++ V+ +L S A + A G K+ Sbjct: 401 NDDISLQRIINVPKRGVGPSS---VEKVQNYALQNNISMFDALGE---ADFIGLSKKVTQ 454 Query: 2397 QITQGRKVLSTLYSLSKFVEREQSVSAIISSAG--NMLPQQYLLEKRAVIDNDGGKLLNE 2570 + +++ +L +F+E + V ++ +G ML ++ LE R+ ++N Sbjct: 455 ECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLEN-------- 506 Query: 2571 DNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRK 2750 + +F+S E+ +L F+ +SL + + Sbjct: 507 --------------IDEFMSVPKDYEENTPLEEQ-----SLINFLTDLSLVADID----E 543 Query: 2751 EENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVA 2930 + +N +TL T+H +KGLE+ +VFI+ + +S P + E ++EERR+ YVA Sbjct: 544 ADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIK---SEDDHEMQEERRICYVA 600 Query: 2931 MTRARKKLYILHVT---IDSHRQLLPPSRFLREIPGHLLD--IQGEGAAIKYHGQPSGDI 3095 +TRA + LYI H T + Q PSRFL+EIP LL+ G+ I+ +P Sbjct: 601 ITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKR 660 Query: 3096 SFDHAEGETSTEKPI 3140 F ++ TST+K + Sbjct: 661 GF--SQRTTSTKKQV 673
>Q53727:PCRA_STAA8 ATP-dependent DNA helicase pcrA - Staphylococcus aureus (strain NCTC| 8325) Length = 730 Score = 274 bits (701), Expect = 2e-72 Identities = 221/735 (30%), Positives = 362/735 (49%), Gaps = 16/735 (2%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTA 1160 L+ +N +Q EA PL+I+AG GSGKT + R+ LL E +SP N+LA+TFT Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 1161 AASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIV 1340 AA EM++R+ +VG A+ I +STFHS C+++ R A+++G F I Q+ I Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122 Query: 1341 EAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG--- 1511 D +K + D K K + + ++ ++ K+ +TP + +K+ Sbjct: 123 ---------------DVLKNENIDSK---KFEPRMFIGAISNLKNELKTPADAQKEATDY 164 Query: 1512 -DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDT 1688 A++ Y L ALD+ D I ++I L + PEV + Q Q I VDE+QDT Sbjct: 165 HSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDT 224 Query: 1689 SAMQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRS 1865 + QY L+KLLAS ++ +VGD DQSI+ + GAD+ SF +D+P I L +NYRS Sbjct: 225 NKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRS 284 Query: 1866 TRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSS 2045 T+ I+ AA +I+NN+ R K + T N +G KI E +E + FVI +I++ Sbjct: 285 TKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMK---HQ 340 Query: 2046 AEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTLPG 2222 G+ + +A+LYR + + +F +P+ V G FY +K IK +++ LR Sbjct: 341 RNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANS 400 Query: 2223 CDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRA-- 2396 DD ++ + + G ++ V+ +L S A + A G K+ Sbjct: 401 NDDISLQRIINVPKRGVGPSS---VEKVQNYALQNNISMFDALGE---ADFIGLSKKVTQ 454 Query: 2397 QITQGRKVLSTLYSLSKFVEREQSVSAIISSAG--NMLPQQYLLEKRAVIDNDGGKLLNE 2570 + +++ +L +F+E + V ++ +G ML ++ LE R+ ++N Sbjct: 455 ECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLEN-------- 506 Query: 2571 DNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRK 2750 + +F+S E+ +L F+ +SL + + Sbjct: 507 --------------IDEFMSVPKDYEENTPLEEQ-----SLINFLTDLSLVADID----E 543 Query: 2751 EENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVA 2930 + +N +TL T+H +KGLE+ +VFI+ + +S P + E ++EERR+ YVA Sbjct: 544 ADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIK---SEDDHEMQEERRICYVA 600 Query: 2931 MTRARKKLYILHVT---IDSHRQLLPPSRFLREIPGHLLD--IQGEGAAIKYHGQPSGDI 3095 +TRA + LYI H T + Q PSRFL+EIP LL+ G+ I+ +P Sbjct: 601 ITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKR 660 Query: 3096 SFDHAEGETSTEKPI 3140 F ++ TST+K + Sbjct: 661 GF--SQRTTSTKKQV 673
>Q8CRT9:PCRA_STAES ATP-dependent DNA helicase pcrA - Staphylococcus epidermidis (strain| ATCC 12228) Length = 729 Score = 271 bits (693), Expect = 2e-71 Identities = 216/733 (29%), Positives = 366/733 (49%), Gaps = 14/733 (1%) Frame = +3 Query: 990 SLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTAAA 1166 ++N +Q EA + PL+I+AG GSGKT + R+ LL E +SP NILA+TFT AA Sbjct: 7 NMNSEQSEAVRTTEG-PLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAA 65 Query: 1167 SEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEA 1346 EM+ R+ +VG+ A+ I +STFHS C+++ R A+++G F I Q+ I + Sbjct: 66 KEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDV 124 Query: 1347 ERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGD---- 1514 KS+ + +S + + + ++ ++ K+ +TPE+ +K+ + Sbjct: 125 L------KSENI------------DSKRFEPRMFIGAISNLKNELKTPEDAQKEANDFHS 166 Query: 1515 LTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSA 1694 A++ + Y L ALD+ D I ++I L + PE + Q Q I VDE+QDT+ Sbjct: 167 QMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPETLEYYQNKFQYIHVDEYQDTNK 226 Query: 1695 MQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTR 1871 QY L+KLLA+ ++ +VGD DQSI+ + GAD+ SF D+P K I L +NYRST+ Sbjct: 227 AQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQNILSFEEDYPEAKTIFLEQNYRSTK 286 Query: 1872 AIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSSAE 2051 I+ AA +I++N+ R K + T N G KI E +E + +V+ +I++ S Sbjct: 287 NILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYEAMTERDEAEYVVKEIMKHQRS--- 342 Query: 2052 GRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTLPGCD 2228 G+ + ++A+LYR + + +F IP+ V G FY +K IK +++ LR D Sbjct: 343 GKKYSEMAILYRTNAQSRVLEETFMKSNIPYTMVGGQKFYDRKEIKDLLSYLRVIANSND 402 Query: 2229 DGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRAQITQ 2408 D ++ + + G ++ ++ +L S A ++ +S + I+ Sbjct: 403 DISLQRIINVPKRGIGPSS---VEKIQTYALQNNISMFDALAEVDFIGLSKKVTQECISF 459 Query: 2409 GRKVLSTLYSLSKFVEREQSVSAIISSAG--NMLPQQYLLEKRAVIDNDGGKLLNEDNDI 2582 +++ L +F+E + V ++ +G +ML ++ +E R+ ++N Sbjct: 460 -YEMIQNLIKEQEFLEISEIVDEVLQKSGYRDMLDREQSIESRSRLEN------------ 506 Query: 2583 RSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEENK 2762 + +F+S E+ +L F+ +SL + + + + Sbjct: 507 ----------LDEFMSVPKDYEENTPLEEQ-----SLINFLTDLSLVADID----EADTQ 547 Query: 2763 NSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMTRA 2942 N +TL T+H +KGLE+ +VFI+ + +S P + E +EEERR+ YVA+TRA Sbjct: 548 NGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIK---SEDDHEMEEERRICYVAITRA 604 Query: 2943 RKKLYILHVT---IDSHRQLLPPSRFLREIPGHLLDIQ--GEGAAIKYHGQPSGDISFDH 3107 + LYI + T + Q PSRFL+EIP LLD + I QP S Sbjct: 605 EELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLDSHTGQKRQTISPKSQPKRGFS--- 661 Query: 3108 AEGETSTEKPIAN 3146 + TST+K +++ Sbjct: 662 -KRTTSTKKQVSS 673
>Q5HN29:PCRA_STAEQ ATP-dependent DNA helicase pcrA - Staphylococcus epidermidis (strain| ATCC 35984 / RP62A) Length = 729 Score = 271 bits (693), Expect = 2e-71 Identities = 215/732 (29%), Positives = 366/732 (50%), Gaps = 13/732 (1%) Frame = +3 Query: 990 SLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTAAA 1166 ++N +Q EA + PL+I+AG GSGKT + R+ LL E +SP NILA+TFT AA Sbjct: 7 NMNSEQSEAVRTTEG-PLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAA 65 Query: 1167 SEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEA 1346 EM+ R+ +VG+ A+ I +STFHS C+++ R A+++G F I Q+ I + Sbjct: 66 KEMKARVEHLVGEE-AQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDV 124 Query: 1347 ERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGD---- 1514 KS+ + +S + + + ++ ++ K+ +TPE+ +K+ + Sbjct: 125 L------KSENI------------DSKRFEPRMFIGAISNLKNELKTPEDAQKEANDFHS 166 Query: 1515 LTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSA 1694 A++ + Y L ALD+ D I ++I L + PE + Q Q I VDE+QDT+ Sbjct: 167 QMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPETLEYYQNKFQYIHVDEYQDTNK 226 Query: 1695 MQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTR 1871 QY L+KLLA+ ++ +VGD DQSI+ + GAD+ SF D+P K I L +NYRST+ Sbjct: 227 AQYTLVKLLANKFKNLCVVGDSDQSIYGWRGADIQNILSFEEDYPEAKTIFLEQNYRSTK 286 Query: 1872 AIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSSAE 2051 I+ AA +I++N+ R K + T N G KI E +E + +V+ +I++ S Sbjct: 287 NILNAANEVIKHNSER-KPKGLWTANSGGDKIQYYEAMTERDEAEYVVKEIMKHQRS--- 342 Query: 2052 GRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTLPGCD 2228 G+ + ++A+LYR + + +F IP+ V G FY +K IK +++ LR D Sbjct: 343 GKKYSEMAILYRTNAQSRVLEETFMKSNIPYTMVGGQKFYDRKEIKDLLSYLRVIANSND 402 Query: 2229 DGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRAQITQ 2408 D ++ + + G ++ ++ +L S A ++ +S + I+ Sbjct: 403 DISLQRIINVPKRGIGPSS---VEKIQTYALQNNISMFDALAEVDFIGLSKKVTQECISF 459 Query: 2409 GRKVLSTLYSLSKFVEREQSVSAIISSAG--NMLPQQYLLEKRAVIDNDGGKLLNEDNDI 2582 +++ L +F+E + V ++ +G +ML ++ +E R+ ++N Sbjct: 460 -YEMIQNLIKEQEFLEISEIVDEVLQKSGYRDMLDREQSIESRSRLEN------------ 506 Query: 2583 RSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEENK 2762 + +F+S E+ +L F+ +SL + + + + Sbjct: 507 ----------LDEFMSVPKDYEENTPLEEQ-----SLINFLTDLSLVADID----EADTQ 547 Query: 2763 NSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMTRA 2942 N +TL T+H +KGLE+ +VFI+ + +S P + E +EEERR+ YVA+TRA Sbjct: 548 NGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIK---SEDDHEMEEERRICYVAITRA 604 Query: 2943 RKKLYILHVT---IDSHRQLLPPSRFLREIPGHLLDIQ-GEGAAIKYHGQPSGDISFDHA 3110 + LYI + T + Q PSRFL+EIP LLD G+ Y P + Sbjct: 605 EELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLDSHTGQKRQTIY---PKSQPKRGFS 661 Query: 3111 EGETSTEKPIAN 3146 + TST+K +++ Sbjct: 662 KRTTSTKKQVSS 673
>O34580:PCRA_BACSU ATP-dependent DNA helicase pcrA - Bacillus subtilis| Length = 739 Score = 266 bits (681), Expect = 4e-70 Identities = 213/703 (30%), Positives = 343/703 (48%), Gaps = 15/703 (2%) Frame = +3 Query: 978 EYLHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEG-ISPSNILAMTFT 1154 + L LN Q+EA PL+++AG GSGKT + R+ L+ E ++P NILA+TFT Sbjct: 7 QLLSGLNPVQQEA-VKTTDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65 Query: 1155 TAAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRA 1334 AA EM++R+ +++G A +I ISTFHS C+++ R +++G F I Q Sbjct: 66 NKAAREMKERVESILGPG-ADDIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSV 124 Query: 1335 I--VEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKK 1508 I + ER L+ K D + L ++ AK+ PEE+ K Sbjct: 125 IKGILKERNLDPKKFD--------------------PRSILGTISSAKNELTEPEEFSKV 164 Query: 1509 G----DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDE 1676 D + + Y + L+ +LD+ D I ++I L + PEV + Q Q I VDE Sbjct: 165 AGGYYDQVVSDVYADYQKKLLKNQSLDFDDLIMTTIKLFDRVPEVLEFYQRKFQYIHVDE 224 Query: 1677 FQDTSAMQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNK 1853 +QDT+ QY L+K LA ++ +VGD DQSI+ + GAD++ SF +D+PN I L + Sbjct: 225 YQDTNRAQYMLVKQLAERFQNLCVVGDSDQSIYRWRGADITNILSFEKDYPNASVILLEQ 284 Query: 1854 NYRSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIET 2033 NYRST+ I+ AA +I+NN+NR K + T+N G KI+ +E + FV KI + Sbjct: 285 NYRSTKRILRAANEVIKNNSNR-KPKNLWTENDEGIKISYYRGDNEFGEGQFVAGKIHQL 343 Query: 2034 TSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRT 2210 S+ R IA+LYR + + + + +N V G FY +K IK I+A LR Sbjct: 344 HSTGK--RKLSDIAILYRTNAQSRVIEETLLKAGLNYNIVGGTKFYDRKEIKDILAYLRL 401 Query: 2211 TLPGCDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFK 2390 DD + + + + G ++ + + SF A + VS Sbjct: 402 VSNPDDDISFTRIVNVPKRGVGATS---LEKIASYAAINGLSFFQAIQQVDFIGVSAKAA 458 Query: 2391 RAQITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNE 2570 A + R+++ L ++ ++ + I+ + ++L Sbjct: 459 NA-LDSFRQMIENLTNMQDYLSITELTEEILDK------------------TEYREMLKA 499 Query: 2571 DNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRK 2750 + I + Q ++++ +FLS E+K TL AF+ ++L + +K Sbjct: 500 EKSIEA--QSRLENIDEFLSV-------TKNFEQKSEDKTLVAFLTDLALIADIDQLDQK 550 Query: 2751 EE---NKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLF 2921 EE K++ITL T+H +KGLE+ VVF++ + + P ++EA +EEERRL Sbjct: 551 EEESGGKDAITLMTLHAAKGLEFPVVFLMGLEEGVFP---HSRSLMEEA--EMEEERRLA 605 Query: 2922 YVAMTRARKKLYILHV---TIDSHRQLLPPSRFLREIPGHLLD 3041 YV +TRA ++LY+ + T+ + P SRF+ EIP LL+ Sbjct: 606 YVGITRAEQELYLTNAKMRTLFGRTNMNPESRFIAEIPDDLLE 648
>P56255:PCRA_BACST ATP-dependent DNA helicase pcrA - Bacillus stearothermophilus| (Geobacillus stearothermophilus) Length = 724 Score = 266 bits (679), Expect = 7e-70 Identities = 222/737 (30%), Positives = 357/737 (48%), Gaps = 18/737 (2%) Frame = +3 Query: 978 EYLHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEG-ISPSNILAMTFT 1154 + L LN +Q+EA + PL+I+AG GSGKT + R+ L+ E ++P NILA+TFT Sbjct: 7 QLLAHLNKEQQEAVRTTEG-PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65 Query: 1155 TAAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRA 1334 AA EMR+R+ +++G A A+++ ISTFHS C+++ R +++G F I Q Sbjct: 66 NKAAREMRERVQSLLGGA-AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSV 124 Query: 1335 IVEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG- 1511 + +K+ + D K K + + L ++ AK+ PE++ K+ Sbjct: 125 ---------------MKTILKEKNIDPK---KFEPRTILGTISAAKNELLPPEQFAKRAS 166 Query: 1512 ---DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQ 1682 + + + + Y + L+ ++LD+ D I ++I L + P+V Q Q I +DE+Q Sbjct: 167 TYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQ 226 Query: 1683 DTSAMQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNY 1859 DT+ QY L+K LA +I VGD DQSI+ + GAD+ SF RD+PN K I L +NY Sbjct: 227 DTNRAQYTLVKKLAERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNY 286 Query: 1860 RSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTS 2039 RST+ I++AA +I +N NR K + T+NP G I E +E + FV +I E Sbjct: 287 RSTKRILQAANEVIEHNVNR-KPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVE 345 Query: 2040 SSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTL 2216 R + AVLYR + + IP+ V G+ FY +K IK I+A LR Sbjct: 346 RGE--RRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIA 403 Query: 2217 PGCDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDI----FSAKVSGT 2384 DD L+I+ + ID + + + + S A ++ AK +G Sbjct: 404 NPDDD---LSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGA 460 Query: 2385 FKRAQITQGRKVLSTLYSLSKFVEREQSVSAIISSAG--NMLPQQYLLEKRAVIDNDGGK 2558 + R L L ++V + V ++ +G ML + +E ++ ++N Sbjct: 461 -----LAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLEN---- 511 Query: 2559 LLNEDNDIRSVLQFLMDDVSDFLST--HFSSSGGASQTEEKGCTATLKAFIDYISLRETE 2732 + +FLS HF + +++K A L L E + Sbjct: 512 ------------------LDEFLSVTKHFENV-----SDDKSLIAFLTDLALISDLDELD 548 Query: 2733 NFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEER 2912 E + ++ L T+H +KGLE+ VVF++ + + P +N ++++ +EEER Sbjct: 549 GTEQAAEGD--AVMLMTLHAAKGLEFPVVFLIGMEEGIFP----HNRSLEDDD-EMEEER 601 Query: 2913 RLFYVAMTRARKKLYILHV---TIDSHRQLLPPSRFLREIPGHLLDIQGEGAAIKYHGQP 3083 RL YV +TRA ++L + T+ + Q+ PPSRFL EIP HLL E A+ + G Sbjct: 602 RLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLL----ETASRRQAGAS 657 Query: 3084 SGDISFDHAEGETSTEK 3134 +S A G + K Sbjct: 658 RPAVSRPQASGAVGSWK 674
>P0A5A3:PCRA_MYCTU ATP-dependent DNA helicase pcrA - Mycobacterium tuberculosis| Length = 771 Score = 242 bits (617), Expect = 1e-62 Identities = 212/711 (29%), Positives = 335/711 (47%), Gaps = 23/711 (3%) Frame = +3 Query: 978 EYLHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLK-EGISPSNILAMTFT 1154 + L LN +QR+A + + PL+IVAG GSGKT+ + R+ L+ G+ ILA+TFT Sbjct: 18 QLLDGLNPQQRQAVVHEGS-PLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFT 76 Query: 1155 TAAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKL-GRTSEFIIYGHGQQRR 1331 AA+EMR+R+ +VG+ A+ + +STFHS C+++ R A + G S F IY RR Sbjct: 77 NKAAAEMRERVVGLVGEK-ARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 Query: 1332 AIVEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG 1511 + R LG +K+ + + K L QA + G T E Sbjct: 136 LLQMVGR--------DLGLDIKRYSPRLLANAISNLKNELIDPHQALA-GLT----EDSD 182 Query: 1512 DLTGA--SILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQD 1685 DL A S+ Y L + NALD+ D I ++ +L FP++ + + + ++VDE+QD Sbjct: 183 DLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQD 242 Query: 1686 TSAMQYFLLKLLASHN--------HITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEI 1841 T+ QY L++ L + + +VGD DQSI++F GA + + F RD+P+ + I Sbjct: 243 TNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTI 302 Query: 1842 RLNKNYRSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDK 2021 L +NYRST+ I+ AA ++I N R K + TD +G I +E + FV ++ Sbjct: 303 LLEQNYRSTQNILSAANSVIARNAGR-REKRLWTDAGAGELIVGYVADNEHDEARFVAEE 361 Query: 2022 IIETTSSSAEGRD--FGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAI 2192 I + AEG + + +AV YR + ++ + IP+ V GV FY +K I+ I Sbjct: 362 I----DALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDI 417 Query: 2193 MAILRTTLPGCDDGPWRQALKILLPGDKEEKKKIID-HVEKISLARKCSFISAATDIFSA 2369 +A LR D R+ L G + + + + E + + ++AA Sbjct: 418 VAYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAA----QG 473 Query: 2370 KVSGTFKRAQITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYL----LEKRAV 2537 KV RA+ +++ FVE + + L + L + Sbjct: 474 KVPMLNTRAE-----------KAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELE 522 Query: 2538 IDNDGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYIS 2717 D +L DN L L+ +F + +++ E+ T L F++ +S Sbjct: 523 ASTDPQELARLDN-----LNELVSVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVS 577 Query: 2718 LRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCT 2897 L + E +TL T+H +KGLE+ VVF+ D P + + + Sbjct: 578 L--VADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTE----- 630 Query: 2898 LEEERRLFYVAMTRARKKLYILHVTIDS---HRQLLPPSRFLREIPGHLLD 3041 L EERRL YV +TRAR++LY+ + S L P SRFLREIP L+D Sbjct: 631 LSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELID 681
>P0A5A4:PCRA_MYCBO ATP-dependent DNA helicase pcrA - Mycobacterium bovis| Length = 771 Score = 242 bits (617), Expect = 1e-62 Identities = 212/711 (29%), Positives = 335/711 (47%), Gaps = 23/711 (3%) Frame = +3 Query: 978 EYLHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLK-EGISPSNILAMTFT 1154 + L LN +QR+A + + PL+IVAG GSGKT+ + R+ L+ G+ ILA+TFT Sbjct: 18 QLLDGLNPQQRQAVVHEGS-PLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFT 76 Query: 1155 TAAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKL-GRTSEFIIYGHGQQRR 1331 AA+EMR+R+ +VG+ A+ + +STFHS C+++ R A + G S F IY RR Sbjct: 77 NKAAAEMRERVVGLVGEK-ARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 Query: 1332 AIVEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG 1511 + R LG +K+ + + K L QA + G T E Sbjct: 136 LLQMVGR--------DLGLDIKRYSPRLLANAISNLKNELIDPHQALA-GLT----EDSD 182 Query: 1512 DLTGA--SILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQD 1685 DL A S+ Y L + NALD+ D I ++ +L FP++ + + + ++VDE+QD Sbjct: 183 DLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQD 242 Query: 1686 TSAMQYFLLKLLASHN--------HITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEI 1841 T+ QY L++ L + + +VGD DQSI++F GA + + F RD+P+ + I Sbjct: 243 TNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTI 302 Query: 1842 RLNKNYRSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDK 2021 L +NYRST+ I+ AA ++I N R K + TD +G I +E + FV ++ Sbjct: 303 LLEQNYRSTQNILSAANSVIARNAGR-REKRLWTDAGAGELIVGYVADNEHDEARFVAEE 361 Query: 2022 IIETTSSSAEGRD--FGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAI 2192 I + AEG + + +AV YR + ++ + IP+ V GV FY +K I+ I Sbjct: 362 I----DALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDI 417 Query: 2193 MAILRTTLPGCDDGPWRQALKILLPGDKEEKKKIID-HVEKISLARKCSFISAATDIFSA 2369 +A LR D R+ L G + + + + E + + ++AA Sbjct: 418 VAYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAA----QG 473 Query: 2370 KVSGTFKRAQITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYL----LEKRAV 2537 KV RA+ +++ FVE + + L + L + Sbjct: 474 KVPMLNTRAE-----------KAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELE 522 Query: 2538 IDNDGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYIS 2717 D +L DN L L+ +F + +++ E+ T L F++ +S Sbjct: 523 ASTDPQELARLDN-----LNELVSVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVS 577 Query: 2718 LRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCT 2897 L + E +TL T+H +KGLE+ VVF+ D P + + + Sbjct: 578 L--VADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTE----- 630 Query: 2898 LEEERRLFYVAMTRARKKLYILHVTIDS---HRQLLPPSRFLREIPGHLLD 3041 L EERRL YV +TRAR++LY+ + S L P SRFLREIP L+D Sbjct: 631 LSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELID 681
>Q9CD72:PCRA_MYCLE ATP-dependent DNA helicase pcrA - Mycobacterium leprae| Length = 778 Score = 241 bits (616), Expect = 1e-62 Identities = 211/727 (29%), Positives = 340/727 (46%), Gaps = 21/727 (2%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLK-EGISPSNILAMTFTTA 1160 L LN +QR+A + + PL+IVAG GSGKT+ + R+ L+ + S ILA+TFT Sbjct: 18 LDGLNPQQRQAVVHEGS-PLLIVAGAGSGKTTVLARRIAYLIAARSVGVSQILAITFTNK 76 Query: 1161 AASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGR-TSEFIIYGHGQQRRAI 1337 AA+EMR+R+ +VG + +STFHS C+++ R A +G S F IY + Sbjct: 77 AAAEMRERVARLVGDHTGPSMWVSTFHSTCVRILRNQASLIGGLNSNFSIYD-------V 129 Query: 1338 VEAERLLEH-GKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGD 1514 ++ LL+ G+ GL D + + N+ + + + + + ++ + Sbjct: 130 DDSRSLLQMIGQDMGL-DIKRYSPRLMANAISNLKNELIDAESAVANLSSDTDDLAR--- 185 Query: 1515 LTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSA 1694 T A++ Y L + NALD+ D I ++ +L FP++ + + + ++VDE+QDT+ Sbjct: 186 -TVATVYGEYQRRLRTANALDFDDLIGETVGILQAFPQIAEHYRRRFRHVLVDEYQDTNH 244 Query: 1695 MQYFLLKLLASHN-----------HITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEI 1841 QY L++ L H + +VGD DQSI++F G+ +S + F RD+P+ I Sbjct: 245 AQYVLVRELVGHGARNSPDDMPPGELCVVGDADQSIYAFRGSTISNIEDFERDYPDTTTI 304 Query: 1842 RLNKNYRSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDK 2021 L +NYRST+ I+ AA ++I N R K + TD G I +E + F+ D+ Sbjct: 305 LLEQNYRSTQNILSAANSVIARNFGR-RDKRLWTDAGKGELIVGYVSDNEHDEAKFIADE 363 Query: 2022 IIETTSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMA 2198 I D +AVLYR ++ + F IP+ V G FY K I+ ++A Sbjct: 364 IDALVGGGEITYD--DVAVLYRANNLSRSLEEVFIPTGIPYKVVGGFCFYESKEIRDLIA 421 Query: 2199 ILRTTLPGCDDGPWRQALKILLPGDKEEKKKIID-HVEKISLARKCSFISAATDIFSAKV 2375 LR D R+ L G + + + + E SF A + KV Sbjct: 422 YLRVLDNPGDAVSMRRILNTPRRGIGDRAEACVSVYAENTG----TSFADALQAVAEGKV 477 Query: 2376 SGTFKRAQITQGRKVLSTLYSLSKFVERE--QSVSAIISSAGNMLPQQYLLEKRAVIDND 2549 R+ + ++ L L V+ + + V +++ +G YL E + D Sbjct: 478 PMLNTRS-VKAIAGFVALLDDLRCRVDDDLGELVESVLERSG------YLRELESSTDPQ 530 Query: 2550 GGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRET 2729 L+ N++ S + ++ + + S + E+ T L AF++ +SL Sbjct: 531 ELARLDNLNELVSFAHEFSTEQAN--AAALAKSLHTPEDEDVPDTGALAAFLEKVSLMSD 588 Query: 2730 ENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEE 2909 + E N +TL T+H +KGLE+ VVF+ D +P + + L EE Sbjct: 589 TD--QIPENNSGVVTLMTLHAAKGLEFPVVFVTGWEDGMLPHMRTLGDPTE-----LSEE 641 Query: 2910 RRLFYVAMTRARKKLYILH-VTIDSHRQ--LLPPSRFLREIPGHLLDIQGEGAAIKYHGQ 3080 RRL YV +TRAR++LY+ +T S Q L P SRFLREIP L+D + Y Sbjct: 642 RRLAYVGITRARQRLYLSRAITRSSWGQPILNPESRFLREIPPELIDWRRSILTDSYSTP 701 Query: 3081 PSGDISF 3101 SG F Sbjct: 702 ASGASRF 708
>P45612:UVRD_MYCCT Probable DNA helicase II homolog - Mycoplasma capricolum subsp.| capricolum (strain California kid / ATCC 27343 / NCTC 10154) Length = 722 Score = 241 bits (615), Expect = 2e-62 Identities = 212/705 (30%), Positives = 345/705 (48%), Gaps = 17/705 (2%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLL-KEGISPSNILAMTFTTA 1160 L LND+Q A+ ++ P+ I+AG GSGKT + ++ L+ K+ I PS ILA+TFT Sbjct: 7 LDLLNDQQL-AAVLNIDKPVRIIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAVTFTNK 65 Query: 1161 AASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIV 1340 AA EM++R+ + + K ISTFHS+C ++ R + +G +F+I Q+R I Sbjct: 66 AAKEMKERVLQITNNSF-KSPFISTFHSWCSKVLRIDGKHIGLEDKFLIIDSDDQKRIIK 124 Query: 1341 EA--ERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLK-FVTQAKSSGQTPEEYEKKG 1511 A E +E ++D K D I K K+W + V +++ EK Sbjct: 125 SALKESNIELSENDK-----KTFDKKILY----KIKEWKEELVDPSEAILNATSTLEKNF 175 Query: 1512 DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTS 1691 A I R Y L+ N+LD+ D L + E+ + + ++VDEFQDT+ Sbjct: 176 ----AVIYRLYQNTLLKNNSLDFDDLQIYVYRLFKQNNEILNKWRNAYDYVLVDEFQDTN 231 Query: 1692 AMQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRST 1868 +Q+ L+K L + NH+T+VGD DQ+I+S+ GA + +F + + N I LN+NYRST Sbjct: 232 ELQFSLIKFLTINTNHLTVVGDPDQTIYSWRGAKLDIILNFNKTYSNAISIVLNQNYRST 291 Query: 1869 RAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSSA 2048 + I++ + + I+NN R HK + T+N SG K+ +KEC+S+ S+ ++V KI E Sbjct: 292 KQILDISNSFIKNNKFR-EHKEIFTNNKSGKKVVLKECNSKTSEASYVSSKIKELVK--- 347 Query: 2049 EGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTLPGC 2225 +G + I +LYR + F+ N+KIPF + G+ F +KVIK MA Sbjct: 348 QGYHYKDIFILYRMNAWSQEFEKELANKKIPFQLIGGIKFRERKVIKDAMAF-------- 399 Query: 2226 DDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRAQIT 2405 LK++ D ++++ + KI I+ I +A ++ IT Sbjct: 400 --------LKMISIKDNLSSQRVLGLIPKI------GNITIEKIINTANLNHLNIFDLIT 445 Query: 2406 QGRKVL--STLYSLSKFVEREQSVSAIISSAGNMLP-QQYLLEKRAVIDNDGGKLLNEDN 2576 K L S +L + +E ++ + N+ +YLL + + K+ E + Sbjct: 446 NEDKTLLHSITKNLDELIEVFKTAHQLYLDNTNIEEILKYLLIQSGY--ENKLKIRKEQD 503 Query: 2577 DIRSVLQFLMDDV----SDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRS 2744 D+ ++ L D + DF ++S L AF+ +L + Sbjct: 504 DLENI-NALYDQLKRFDEDFDPKYYSEEN------------KLIAFLQEEALTSDID--- 547 Query: 2745 RKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCT-LEEERRLF 2921 + E + ++L T+H +KGLE VVFI +N P + E LEEERR Sbjct: 548 -EAEQIDKVSLLTVHAAKGLENKVVFITGLNQGIFP------SRISETSINELEEERRAL 600 Query: 2922 YVAMTRARKKLYILHVTID-SH--RQLLPPSRFLREIPGHLLDIQ 3047 YVA+TRA+ +L++ +V D SH + L PS+F+ E+ L + + Sbjct: 601 YVALTRAKDELFLTYVKGDYSHIMQSELKPSKFIHELDKDLYEFE 645
>Q9S3Q0:PCRA_LEUCI ATP-dependent DNA helicase pcrA - Leuconostoc citreum| Length = 749 Score = 240 bits (613), Expect = 3e-62 Identities = 202/715 (28%), Positives = 331/715 (46%), Gaps = 25/715 (3%) Frame = +3 Query: 987 HSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTAA 1163 + +N+KQ EA PL+I+AG GSGKT + R+ L+++ + P ILA+TFT A Sbjct: 8 NGMNNKQAEA-VQTTEGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKA 66 Query: 1164 ASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVE 1343 A EMR+RI A++ + VA++I +STFH+ +++ R E +G F I QR + Sbjct: 67 AREMRERIAALLSEDVARDIWVSTFHALAVRILRRDGEAIGLAKNFTIIDTSAQRTLM-- 124 Query: 1344 AERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGDL-- 1517 +R++ D Q D + L ++ AK+ P +Y K D Sbjct: 125 -KRVINDLNLD-----TNQYD----------PRTILGMISNAKNDMLQPRDYAKAADNAF 168 Query: 1518 --TGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTS 1691 T A + Y L ++D+ D I +I L P+V Q + + VDE+QDT+ Sbjct: 169 QETVAEVYTAYQAELKRSQSVDFDDLIMLTIDLFQSAPDVLARYQQQFEYLHVDEYQDTN 228 Query: 1692 AMQYFLLKLLASHN-HITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRST 1868 QY ++ LLA + ++ +VGD DQSI+ + GA+++ +F +D+PN + L +NYRST Sbjct: 229 DAQYTIVNLLAQRSKNLAVVGDADQSIYGWRGANMNNILNFEKDYPNAHTVMLEQNYRST 288 Query: 1869 RAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSSA 2048 + I++AA A+I +N R KL T+N G +IT +E + F++ I + + Sbjct: 289 QNILDAANAVINHNNERVPKKL-WTENGKGDQITYYRAQTEHDEANFILSNIQQLRET-- 345 Query: 2049 EGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTLPGC 2225 + + AVLYR + + S +P++ V G FY +K I IMA + Sbjct: 346 KHMAYSDFAVLYRTNAQSRNIEESLVKANMPYSMVGGHKFYERKEILDIMAYMSLITNPD 405 Query: 2226 DDGPWRQALKILLPGDKEEKKKI----IDHVEKISLARKCSFISAATDIFSAKVSGTFKR 2393 D+ + + + E K+ + + + +++ S++ A I A T Sbjct: 406 DNAAFERVV-------NEPKRGLGATSLTRLRELANRLNVSYMKAIGSIELAPSITTKAA 458 Query: 2394 AQITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNED 2573 ++ +++ L S+F+ + +++ +G +Q L EK D D L Sbjct: 459 SKFLTFAEMMHNLRQQSEFLNVTELTELVMTQSGY---RQMLAEKN---DPDSQARLENL 512 Query: 2574 NDIRSVLQFL-----------MDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISL 2720 + SV + +D V+DFL G TA + D+ Sbjct: 513 EEFLSVTKEFDDKYQPEDPESIDPVTDFL----------------GTTALMSDLDDF--- 553 Query: 2721 RETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTL 2900 EE ++TL T+H +KGLE+ VVF++ + + PL L Sbjct: 554 ----------EEGDGAVTLMTLHAAKGLEFPVVFLIGLKEGIFPL-----SRAMMDEDLL 598 Query: 2901 EEERRLFYVAMTRARKKLYILHV---TIDSHRQLLPPSRFLREIPGHLLDIQGEG 3056 EEERRL YV +TRA KKL++ + + Q PSRF+ EI LL+ G Sbjct: 599 EEERRLAYVGITRAMKKLFLTNAFSRLLYGRTQANEPSRFIAEISPELLETAYSG 653
>Q1RIP8:UVRD_RICBR Probable DNA helicase II homolog - Rickettsia bellii (strain| RML369-C) Length = 653 Score = 238 bits (606), Expect = 2e-61 Identities = 200/700 (28%), Positives = 341/700 (48%), Gaps = 12/700 (1%) Frame = +3 Query: 975 YEYLHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGI-SPSNILAMTF 1151 +++LHSLN++Q++A PL+++AG G+GKT + R+ ++ + + SP NILA+TF Sbjct: 4 HDFLHSLNEQQQKAVLHTEG-PLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTF 62 Query: 1152 TTAAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAE--KLGRTSEFIIYGHGQQ 1325 T AA EM++R+ +V + + I TFHS ++ R E LG S F I Q Sbjct: 63 TNKAAKEMQERVHNLVS---SYGLNIGTFHSMAARILRDQIEHLNLGLNSRFTIISQDDQ 119 Query: 1326 RRAIVEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEK 1505 R I + +L K+ + + + +KD+ + SS T ++ Sbjct: 120 LRLIKDIVKL----KNIDTKKYAPKLIHIVISRWKDQG-----LLPNKLSSSDTNLPLQR 170 Query: 1506 KGDLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQD 1685 L + Y + L+ N +D+ D + + L K P++ K Q + I++DE+QD Sbjct: 171 VAKL----VYEEYQQNLLISNVVDFGDLLLYNNELFIKNPDILKHYQERYRYILIDEYQD 226 Query: 1686 TSAMQYFLLKLLAS-HNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYR 1862 T+ +QY ++LAS +I VGD+DQSI+ + GA+V F +DF N I+L +NYR Sbjct: 227 TNVVQYLWARMLASLSKNICCVGDDDQSIYGWRGAEVGNILRFEKDFLNATIIKLEQNYR 286 Query: 1863 STRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSS 2042 ST I+ AA+ +I NN NR H K + TD SG KI + C ++ + ++ +I Sbjct: 287 STLPILAAASNVINNNKNR-HGKTLWTDKESGEKIKIISCWNDKEEARYIAAEIARLV-- 343 Query: 2043 SAEGR-DFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILRTTL 2216 EGR G IA+L R ++F+ +F N +P+ + G+ FY + I+ ++A +R L Sbjct: 344 -REGRYSAGNIAILVRAGFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAYIRIAL 402 Query: 2217 PGCDDGPWRQALKILLPGDKEEKKKI-IDHVEKISLARKCSFISAATDIFSAKVSGTFKR 2393 D+ AL+ ++ K + ++ ++ ++ + S +A ++ T Sbjct: 403 NQNDN----LALERIINVPKRAIGAVTLNKIKLYAIEKNISNFAAIKEMLEDGEIKTKSY 458 Query: 2394 AQITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNED 2573 + +S + F AI+ +G + + L E++ + G++ N + Sbjct: 459 ETLKDLVTKISNWHERFSFDAPINVTKAILDDSGYL---EMLQEEKT--EEALGRIENIN 513 Query: 2574 NDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKE 2753 +R++ +F +D+ D FI++ SL EN S + Sbjct: 514 EMLRAIAEF--NDIHD--------------------------FIEHSSL-VMEN-ESLET 543 Query: 2754 ENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAM 2933 S+T+ T+H +KGLE+DVVF+ + P + +E LEEERR+ YV + Sbjct: 544 SYGGSVTIMTLHGAKGLEFDVVFLPGWEEGVFPSQRSLD---EEGEKGLEEERRIAYVGI 600 Query: 2934 TRARKKLYILHVTIDSHRQLLP-----PSRFLREIPGHLL 3038 TRA+K+LYI H +S + PSRFL EIP ++ Sbjct: 601 TRAKKELYITHA--ESRKIFYEIVRSYPSRFLAEIPEEII 638
>Q68WT1:UVRD_RICTY DNA helicase II - Rickettsia typhi| Length = 658 Score = 234 bits (596), Expect = 3e-60 Identities = 200/711 (28%), Positives = 338/711 (47%), Gaps = 26/711 (3%) Frame = +3 Query: 981 YLHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGIS-PSNILAMTFTT 1157 ++H+LN +Q++A+ PL+++AG G+GKT + R+ ++++ ++ P NILA+TFT Sbjct: 10 FMHTLNSEQKKAALHTEG-PLLLLAGAGTGKTKVLTSRIANIIQQNLALPHNILAVTFTN 68 Query: 1158 AAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKL--GRTSEFIIYGHGQQRR 1331 AA EM +R+ ++ + I TFHS ++ R E L G ++F I H Q Sbjct: 69 KAAKEMSERVHNLIN---CYGVNIGTFHSMAAKILRDQIENLNLGLNNKFTIISHDDQLT 125 Query: 1332 AIVEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG 1511 + + +L + D D K K K +++ K G P + Sbjct: 126 LVKDIVKLKK--------------DIDTK---KYTPKLIHIIISRWKDQGLLPSKLSASD 168 Query: 1512 -----DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDE 1676 I Y + L+ N LD+ D + + L K PE+ K Q + I++DE Sbjct: 169 TNLPLQRVAKLIYEEYQKNLLISNVLDFGDLLLYNNELFIKNPEILKYYQEKYRYILIDE 228 Query: 1677 FQDTSAMQYFLLKLLAS-HNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNK 1853 +QDT+ QY ++LAS + +I VGD+DQSI+ + GA+V F +DF I+L + Sbjct: 229 YQDTNIAQYLWARMLASLYRNICCVGDDDQSIYGWRGAEVGNILRFEKDFAGATIIKLEQ 288 Query: 1854 NYRSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFV---IDKI 2024 NYRST I+ AA+ +I NN NR H K + TD+ SG KI + C S+ + ++ IDK+ Sbjct: 289 NYRSTLPILAAASNVINNNKNR-HSKTLWTDSASGEKIKIISCLSDKEEARYIACEIDKL 347 Query: 2025 IETTSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAI 2201 + A G IA+L R ++F+ +F N +P+ + G+ FY + I+ ++A Sbjct: 348 VREERYHA-----GNIAILVRAGFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAY 402 Query: 2202 LRTTLPGCDDGPWRQALKILLPGDKEEKKKI----IDHVEKISLARKCSFISAATDIFSA 2369 +R +L D+ + + + K+ I ++ + +L R S A +I Sbjct: 403 IRISLNQNDNLALERIINV-------PKRAIGAASLNKIRSYALERNISNFVAIKEILE- 454 Query: 2370 KVSGTFKRAQITQGRKVLSTLYS-LSKFVERE--QSVSAIISSAGNMLPQQYLLEKRAVI 2540 +G FK + +L+ + + KF+ V I+ +G + L E++ Sbjct: 455 --TGIFKAKSYESLKDLLTKIDNWYEKFITDTPINVVKTILDDSGYL---SMLQEEKT-- 507 Query: 2541 DNDGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISL 2720 + G++ N + +R++ +F +D+ D FI++ SL Sbjct: 508 EEAFGRIENINEMLRAIAEF--NDIHD--------------------------FIEHSSL 539 Query: 2721 -RETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCT 2897 E E + S+T+ T+H +KGLE+DVVF+ + P + ++ Sbjct: 540 VMENEVLET---NYGGSVTIMTLHAAKGLEFDVVFLPGWEEGVFPSQRSLD---EDGEKG 593 Query: 2898 LEEERRLFYVAMTRARKKLYILHVTIDSHRQLLP-----PSRFLREIPGHL 3035 LEEERR+ YV +TRA+K LYI H +S + PSRF+ EIP + Sbjct: 594 LEEERRIAYVGITRAKKDLYITHA--ESRKIFYEIVHSCPSRFINEIPDEI 642
>Q4ULN5:UVRD_RICFE Probable DNA helicase II homolog - Rickettsia felis (Rickettsia| azadi) Length = 654 Score = 233 bits (594), Expect = 5e-60 Identities = 204/711 (28%), Positives = 338/711 (47%), Gaps = 25/711 (3%) Frame = +3 Query: 978 EYLHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGI-SPSNILAMTFT 1154 +++H+LN +Q++A PL+++AG G+GKT + R+ ++ + + SP NILA+TFT Sbjct: 6 DFIHTLNPQQQKAVLHTKG-PLLLLAGAGTGKTKVLTSRIANIVHQNLASPQNILAVTFT 64 Query: 1155 TAAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAE--KLGRTSEFIIYGHGQQR 1328 AA EM +R+ +++ + I TFHS ++ R E LG + F I H Q Sbjct: 65 NKAAKEMAERVNSLIN---CYGLNIGTFHSMAARILRDQIEHLNLGLNNRFTIISHDDQL 121 Query: 1329 RAIVEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKK 1508 + + D VK D D K K K +++ K G P + Sbjct: 122 KLVK---------------DIVKLKDIDTK---KYAPKLIHIIISRWKDQGLLPSKLSAS 163 Query: 1509 G-----DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVD 1673 + Y + L+ N LD+ D + + L K PE+ + Q + I++D Sbjct: 164 DTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNPEILRYYQEKYRYILID 223 Query: 1674 EFQDTSAMQYFLLKLLAS-HNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLN 1850 E+QDT+ +QY ++LAS + +I VGD+DQSI+ + GA+V F +DF I+L Sbjct: 224 EYQDTNVVQYLWARMLASLYKNICCVGDDDQSIYGWRGAEVGNILRFEKDFAGATIIKLE 283 Query: 1851 KNYRSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFV---IDK 2021 +NYRST I+ AA+ +I NN NR H K + TD SG KI + C S+ + ++ IDK Sbjct: 284 QNYRSTLPILAAASNVINNNKNR-HGKTLWTDRESGEKIKIISCWSDKEEARYIAGEIDK 342 Query: 2022 IIETTSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMA 2198 ++ +A G IA+L R ++F+ +F N +P+ + G+ FY + I+ ++A Sbjct: 343 LVREDRYNA-----GNIAILVRAGFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLA 397 Query: 2199 ILRTTLPGCDDGPWRQALKILLPGDKEEKKKI----IDHVEKISLARKCSFISAATDIFS 2366 +R +L D+ + + + K+ I ++ + +L R S +A ++ Sbjct: 398 YIRISLNQNDNLALERIINV-------PKRAIGAASLNKIRVYALERNISNFAAIKEMLE 450 Query: 2367 AKVSGTFKRAQITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLE--KRAVI 2540 G K A+ + K L T + + ER S+ A I+ +L LE + Sbjct: 451 ---MGEIK-AKPYETLKDLVT--KIDNWHER-FSIDAPINVVKAILDDSGYLEMLQEEKT 503 Query: 2541 DNDGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISL 2720 + G++ N + +R++ +F +D+ D FI++ SL Sbjct: 504 EEAFGRIENINEMLRAIAEF--NDIHD--------------------------FIEHSSL 535 Query: 2721 -RETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCT 2897 E E + S+T+ T+H +KGLE+DVVF+ + P + +E Sbjct: 536 VMENEVLET---NYGGSVTIMTLHAAKGLEFDVVFLPGWEEGVFPSQRSLD---EEGEKG 589 Query: 2898 LEEERRLFYVAMTRARKKLYILHVTIDSHRQLLP-----PSRFLREIPGHL 3035 LEEERR+ YV +TRA+K LYI H +S + PSRF+ EIP + Sbjct: 590 LEEERRIAYVGITRAKKDLYITHA--ESRKIFYEIVRSYPSRFITEIPDEI 638
>Q9ZD95:UVRD_RICPR Probable DNA helicase II homolog - Rickettsia prowazekii| Length = 658 Score = 232 bits (591), Expect = 1e-59 Identities = 203/709 (28%), Positives = 337/709 (47%), Gaps = 24/709 (3%) Frame = +3 Query: 981 YLHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGIS-PSNILAMTFTT 1157 ++H+LN +Q++A+ PL+++AG G+GKT + R+ ++ + ++ P NILA+TFT Sbjct: 10 FMHTLNAEQKKAALHTEG-PLLLLAGAGTGKTKVLTSRIANIIHQNLALPHNILAVTFTN 68 Query: 1158 AAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKL--GRTSEFIIYGHGQQRR 1331 AA EM +R+ ++ + I TFHS ++ R E L G + F I H Q Sbjct: 69 KAAKEMSERVHNLIN---CYGLNIGTFHSMAAKILRDQIENLNLGFNNRFTIISHDDQLT 125 Query: 1332 AIVEAERLLEHGKSDGLGDAVKQCDGDIK---NSFKDKAKKWLKFVTQAKSSGQTPEEYE 1502 + + +L K D DA K I + +KD+ + S+ T + Sbjct: 126 LVKDIVKL----KKDI--DAKKYTPKLIHIIISRWKDQG-----LLPNKLSTSDTNLPLQ 174 Query: 1503 KKGDLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQ 1682 K L + Y + L+ N LD+ D + + L K P V K Q + I++DE+Q Sbjct: 175 KIAKL----VYEEYQKNLLISNVLDFGDLLLYNNELFIKNPAVLKYYQEKYRYILIDEYQ 230 Query: 1683 DTSAMQYFLLKLLAS-HNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNY 1859 DT+ QY ++LAS + +I VGD+DQSI+ + GA+V F +DF I+L +NY Sbjct: 231 DTNIAQYLWARMLASLYRNICCVGDDDQSIYGWRGAEVGNILRFEKDFAGATIIKLEQNY 290 Query: 1860 RSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFV---IDKIIE 2030 RST I+ AA+ +I NN NR H K + TD+ SG KI + C S+ + ++ IDK+++ Sbjct: 291 RSTLPILAAASNVINNNKNR-HSKTLWTDSSSGEKIKIISCLSDKEEARYIACEIDKLVK 349 Query: 2031 TTSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMAILR 2207 +A G IA+L R ++F+ +F N IP+ + G+ FY + I+ ++A +R Sbjct: 350 EERYNA-----GNIAILVRAGFQTRSFEEAFINSAIPYKIIGGLRFYERMEIRDVLAYIR 404 Query: 2208 TTLPGCDDGPWRQALKILLPGDKEEKKKI----IDHVEKISLARKCSFISAATDIFSAKV 2375 +L D+ + + + K+ I ++ + +L R S +A +I Sbjct: 405 ISLNQNDNLALERIINV-------PKRAIGAASLNKIRSYALERNISNFAAIKEILEI-- 455 Query: 2376 SGTFKRAQITQGRKVLSTL---YSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDN 2546 G K + +L+ + Y V AI+ +G + + K + Sbjct: 456 -GNIKAKSYESLKDLLTKIDNWYEQFIIDTPINVVKAILDDSGYL-----AMLKEEKTEE 509 Query: 2547 DGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISL-R 2723 G++ N + +R++ +F +D+ D FI+Y SL Sbjct: 510 AFGRIENINEMLRAIAEF--NDIHD--------------------------FIEYSSLVM 541 Query: 2724 ETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLE 2903 E E + S+T+ T+H +KGLE+DVVF+ + P + ++ LE Sbjct: 542 ENEVLET---NYGGSVTIMTLHAAKGLEFDVVFLPGWEEGVFPSQRSLD---EDGEKGLE 595 Query: 2904 EERRLFYVAMTRARKKLYILHVTIDSHRQLLP-----PSRFLREIPGHL 3035 EERR+ YV +TRA+K LYI H +S + PSRF+ EIP + Sbjct: 596 EERRIAYVGITRAKKDLYITHA--ESRKIFYEIVRSCPSRFINEIPDEI 642
>Q92HZ6:UVRD_RICCN Probable DNA helicase II homolog - Rickettsia conorii| Length = 653 Score = 230 bits (587), Expect = 3e-59 Identities = 203/711 (28%), Positives = 337/711 (47%), Gaps = 25/711 (3%) Frame = +3 Query: 978 EYLHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGI-SPSNILAMTFT 1154 +++H+LN +Q++A PL+++AG G+GKT + R+ ++ + + SP NILA+TFT Sbjct: 5 DFIHTLNPEQQKAVLHTEG-PLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFT 63 Query: 1155 TAAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAE--KLGRTSEFIIYGHGQQR 1328 AA EM +R+ +++ + I TFHS ++ R E LG + F I H Q Sbjct: 64 NKAAKEMAERVNSLIN---CYGLNIGTFHSMAARILRDQIEHLNLGLNNRFTIISHDDQL 120 Query: 1329 RAIVEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKK 1508 + + D VK D D K K K +++ K G P + Sbjct: 121 KLVK---------------DIVKLKDIDTK---KYAPKLIHIIISRWKDQGLLPTKLSVS 162 Query: 1509 G-----DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVD 1673 + Y + L+ N LD+ D + + L K E+ + Q + I++D Sbjct: 163 DTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNSEILRYYQEKYRYILID 222 Query: 1674 EFQDTSAMQYFLLKLLAS-HNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLN 1850 E+QDT+ +QY ++LAS + +I VGD+DQSI+ + GA+V F +DF I+L Sbjct: 223 EYQDTNVVQYLWARMLASLYKNICCVGDDDQSIYGWRGAEVGNILRFEKDFAGATIIKLE 282 Query: 1851 KNYRSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFV---IDK 2021 +NYRST I+ AA+ +I NN NR H K + TD +G KI + C S+ + ++ IDK Sbjct: 283 QNYRSTLPILAAASNVINNNKNR-HGKTLWTDRENGEKIKIISCWSDKEEARYIAGEIDK 341 Query: 2022 IIETTSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKAIMA 2198 ++ +A G IA+L R ++F+ +F N +P+ + G+ FY + I+ ++A Sbjct: 342 LVRENRYNA-----GNIAILVRAGFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLA 396 Query: 2199 ILRTTLPGCDDGPWRQALKILLPGDKEEKKKI----IDHVEKISLARKCSFISAATDIFS 2366 +R +L D+ + + + K+ I ++ + +L R S +A ++ Sbjct: 397 YIRISLNQNDNLALERIINV-------PKRAIGAASLNKIRGYALERNISNFAAIKEMLE 449 Query: 2367 AKVSGTFKRAQITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLE--KRAVI 2540 G K A+ + K L T + + ER S+ A I+ +L LE + Sbjct: 450 I---GEIK-AKSYETLKDLVT--KIDNWYER-FSIDAPINVVKAILDDSGYLEMLQEEKT 502 Query: 2541 DNDGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISL 2720 + G++ N + +R++ +F +DV D FI++ SL Sbjct: 503 EEAFGRIENINEMLRAIAEF--NDVHD--------------------------FIEHSSL 534 Query: 2721 -RETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCT 2897 E E + S+T+ T+H +KGLE+DVVF+ + P + +E Sbjct: 535 VMENEVLET---NYGGSVTIMTLHAAKGLEFDVVFLPGWEEGVFPSQRSLD---EEGEKG 588 Query: 2898 LEEERRLFYVAMTRARKKLYILHVTIDSHRQLLP-----PSRFLREIPGHL 3035 LEEERR+ YV +TRA+K LYI H +S + PSRF+ EIP + Sbjct: 589 LEEERRIAYVGITRAKKDLYITHA--ESRKIFYEIVRSYPSRFITEIPDEI 637
>P03018:UVRD_ECOLI DNA helicase II - Escherichia coli| Length = 720 Score = 224 bits (572), Expect = 2e-57 Identities = 192/693 (27%), Positives = 316/693 (45%), Gaps = 12/693 (1%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVP---LMIVAGPGSGKTSTMVGRVLTLLK-EGISPSNILAMTF 1151 L SLNDKQREA VA P L+++AG GSGKT +V R+ L+ E SP +I+A+TF Sbjct: 7 LDSLNDKQREA----VAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTF 62 Query: 1152 TTAAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRR 1331 T AA+EMR RIG ++G + + + TFH +L R H +F I Q R Sbjct: 63 TNKAAAEMRHRIGQLMGTSQGG-MWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLR 121 Query: 1332 AIVEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG 1511 + +RL++ D + + + W ++ K G P + G Sbjct: 122 LL---KRLIKAMNLD-------------EKQWPPRQAMW--YINSQKDEGLRPHHIQSYG 163 Query: 1512 ---DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQ 1682 + T + + Y E +D+ + + + L P + + + I+VDEFQ Sbjct: 164 NPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQ 223 Query: 1683 DTSAMQYFLLKLLASHN-HITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNY 1859 DT+ +QY ++LLA + IVGD+DQSI+ + GA V F DFP + IRL +NY Sbjct: 224 DTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNY 283 Query: 1860 RSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTS 2039 RST I+ AA ALI NN R KL TD G I++ +E + FV+++I + Sbjct: 284 RSTSNILSAANALIENNNGRLGKKL-WTDGADGEPISLYCAFNELDEARFVVNRI---KT 339 Query: 2040 SSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFNVH-GVAFYRKKVIKAIMAILRTTL 2216 G + A+LYR + + + +P+ ++ G+ F+ ++ IK ++ LR Sbjct: 340 WQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIA 399 Query: 2217 PGCDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRA 2396 DD + + + G + + +D V + S R+ + A ++ K + Sbjct: 400 NRNDDAAFERVVNTPTRGIGD---RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAAS 456 Query: 2397 QITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDN 2576 + + +++ L + + +I +G L Y EK + ++ N + Sbjct: 457 ALQRFMELIDALAQETADMPLHVQTDRVIKDSG--LRTMYEQEKG---EKGQTRIENLEE 511 Query: 2577 DIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEE 2756 + + QF S EE L+AF+ + +L E + + Sbjct: 512 LVTATRQF-------------------SYNEEDEDLMPLQAFLSHAALEAGE---GQADT 549 Query: 2757 NKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMT 2936 ++++ L T+H +KGLE+ VFIV + + P + + G LEEERRL YV +T Sbjct: 550 WQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP-----SQMSLDEGGRLEEERRLAYVGVT 604 Query: 2937 RARKKLYILHV---TIDSHRQLLPPSRFLREIP 3026 RA +KL + + + PSRF+ E+P Sbjct: 605 RAMQKLTLTYAETRRLYGKEVYHRPSRFIGELP 637
>Q05311:UVRD_SALTY DNA helicase II - Salmonella typhimurium| Length = 720 Score = 221 bits (564), Expect = 1e-56 Identities = 190/693 (27%), Positives = 316/693 (45%), Gaps = 12/693 (1%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVP---LMIVAGPGSGKTSTMVGRVLTLLK-EGISPSNILAMTF 1151 L SLNDKQREA VA P ++++AG GSGKT +V R+ LL E SP +I+A+TF Sbjct: 7 LDSLNDKQREA----VAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTF 62 Query: 1152 TTAAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRR 1331 T AA+EMR RIG ++G + + + TFH +L R H +F I Q R Sbjct: 63 TNKAAAEMRHRIGQLMGTSQGG-MWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMR 121 Query: 1332 AIVEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG 1511 + +RL++ D + + + W ++ K G P + G Sbjct: 122 LL---KRLIKAMNLD-------------EKQWPPRQAMW--YINSQKDEGLRPHHIQSYG 163 Query: 1512 ---DLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQ 1682 + T + + Y E +D+ + + + L P + + + I+VDEFQ Sbjct: 164 NPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQ 223 Query: 1683 DTSAMQYFLLKLLASHN-HITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNY 1859 DT+ +QY ++LLA + IVGD+DQSI+ + GA V F DFP + IRL +NY Sbjct: 224 DTNNIQYAWVRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNY 283 Query: 1860 RSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTS 2039 RST I+ AA ALI NN R KL TD G I++ +E + FV+++I + Sbjct: 284 RSTSNILSAANALIENNNGRLGKKL-WTDGVDGEPISLYCAFNELDEARFVVNRI---KT 339 Query: 2040 SSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFNVH-GVAFYRKKVIKAIMAILRTTL 2216 G + A+LYR + + + +P+ ++ G+ F+ ++ IK ++ LR Sbjct: 340 WQDNGGALAQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIA 399 Query: 2217 PGCDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRA 2396 DD + + + G + + +D V + S R+ + ++ K + Sbjct: 400 NRNDDAAFERVVNTPTRGIGD---RTLDVVRQTSRDRQLTLWQVCRELLQEKALAGRAAS 456 Query: 2397 QITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDN 2576 + + +++ L + + +I +G L Y EK + ++ N + Sbjct: 457 ALQRFMELIDALAQETADMPLHVQTDRVIKDSG--LRTMYEQEKG---EKGQTRIENLEE 511 Query: 2577 DIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEE 2756 + + QF +D + L L+AF+ + +L E + + Sbjct: 512 LVTATRQFSYNDEDEDL-------------------MPLQAFLSHAALEAGE---GQADT 549 Query: 2757 NKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMT 2936 ++++ L T+H +KGLE+ VFIV + + P + + G LEEERRL YV +T Sbjct: 550 WQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP-----SQMSLDEGGRLEEERRLAYVGVT 604 Query: 2937 RARKKLYILHV---TIDSHRQLLPPSRFLREIP 3026 RA +KL + + + PSRF+ E+P Sbjct: 605 RAMQKLTLTYAETRRLYGKEVYHRPSRFIGELP 637
>Q02322:UVRD_HAEIN DNA helicase II - Haemophilus influenzae| Length = 727 Score = 216 bits (550), Expect = 6e-55 Identities = 197/700 (28%), Positives = 322/700 (46%), Gaps = 17/700 (2%) Frame = +3 Query: 978 EYLHSLNDKQREASCSDVAVPL---MIVAGPGSGKTSTMVGRVLTLLK-EGISPSNILAM 1145 E L LNDKQRE VA PL +++AG GSGKT + R+ L+ E IS +I+A+ Sbjct: 6 ELLDGLNDKQRER----VAAPLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAV 61 Query: 1146 TFTTAAASEMRDRIGAVVGKAVAKEII---ISTFHSFCLQLCRTHAEKLGRTSEFIIYGH 1316 TFT AA+EMR RI + + K ++ I TFHS +L R H +G +F I Sbjct: 62 TFTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDS 121 Query: 1317 GQQRRAIVEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEE 1496 Q R I +RLL+ D + +F K W ++ K G P + Sbjct: 122 EDQLRLI---KRLLKLHNFD-------------EKAFPPKQACW--YINNKKDEGLRPND 163 Query: 1497 YEKKGDLTGASILRHYNEILVSCNALDYHDFINSSIT---LLTKFPEVYKECQTTCQAIV 1667 E D ++ Y +C+ DF I L K P + + Q Q I+ Sbjct: 164 IEDFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHIL 223 Query: 1668 VDEFQDTSAMQYFLLKLLASH-NHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIR 1844 VDEFQDT+ +QY +K+LA + IVGD+DQSI+ + GA + F +DF + IR Sbjct: 224 VDEFQDTNKIQYKWIKILAGKTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-KAETIR 282 Query: 1845 LNKNYRSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKI 2024 L +NYRST I+ +A LI NN++R K + T+ G + + +E + FV +I Sbjct: 283 LEQNYRSTANILNSANELIANNSDRL-GKNLWTEGEKGDPVGIYSAFNELDEAKFVASQI 341 Query: 2025 IETTSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFNVH-GVAFYRKKVIKAIMAI 2201 + G AVLYR + + + +IP+ ++ G+ F+ ++ IK +A Sbjct: 342 QDWVE---HGGKLDDCAVLYRSNSQSRVIEEALIRCQIPYRIYGGMRFFERQEIKDALAY 398 Query: 2202 LRTTLPGCDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAAT--DIFSAKV 2375 LR DD + + + G + I+ ++ + + AT ++ + + Sbjct: 399 LRLINNRQDDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRA 458 Query: 2376 SGTFKRAQITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGG 2555 S R Q +++++L + + +I +G L + Y EK + Sbjct: 459 STALLRFQ-----ELINSLQLDTAEMPLFAQTDFVIKHSG--LYEMYQQEKG---EKGEV 508 Query: 2556 KLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETEN 2735 ++ N + + + +F+ D ++ ++ L AF+ + SL E Sbjct: 509 RIENLEELVTATREFIKPDNAEEMT-------------------ELTAFLTHASLEAGE- 548 Query: 2736 FRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERR 2915 + +++ + + T+H +KGLE+ VF+V V + P + +E G LEEERR Sbjct: 549 --EQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPSFRSF----EEPG-RLEEERR 601 Query: 2916 LFYVAMTRARKKLYILHV---TIDSHRQLLPPSRFLREIP 3026 L YV +TRA+KKL I + + + + PSRF+ E+P Sbjct: 602 LAYVGITRAKKKLTISYAESRRLYAKEERHLPSRFIAELP 641
>O51889:REP_BUCAP ATP-dependent DNA helicase rep - Buchnera aphidicola subsp.| Schizaphis graminum Length = 658 Score = 214 bits (544), Expect = 3e-54 Identities = 198/705 (28%), Positives = 331/705 (46%), Gaps = 17/705 (2%) Frame = +3 Query: 990 SLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTAAA 1166 SLN Q+ A + P +I+AG GSGKT ++ +++ L+ P NI+A+TFT AA Sbjct: 2 SLNFNQKNA-IELINGPCLILAGAGSGKTKVIINKIIYLINNCQYKPGNIIAVTFTNKAA 60 Query: 1167 SEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEA 1346 E++ R+ + K++IISTFHS L++ + L S F ++ Q + Sbjct: 61 HEIKVRLAKHLNLLQIKKMIISTFHSLGLEIIKKEINTLKFNSNFSLFDERDQMMLLK-- 118 Query: 1347 ERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKG----D 1514 K C IKN K KK + ++ K+ TP + + + Sbjct: 119 ----------------KICSKSIKNDTK-LLKKLVFMISFWKNKFLTPLQVQLSAQSNLE 161 Query: 1515 LTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSA 1694 A + Y L N LD+ D I +LL + Q ++VDE+QDT+ Sbjct: 162 KDFAFFYKQYTFHLRKSNILDFDDLICIPTSLLKNNQIIQNRWQKKISYLLVDEYQDTNN 221 Query: 1695 MQYFLLKLLASHN-HITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTR 1871 QY L+K+L + N + T+VGD+DQSI+S+ GA ++DFPN K I++ +NYRS Sbjct: 222 SQYELIKMLTNVNSNFTLVGDDDQSIYSWRGAKPQNLFLIKKDFPNLKIIKMEQNYRSYG 281 Query: 1872 AIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSSAE 2051 I++AA LI NN + KL ++ G+KI V +E ++ + DKII S+ Sbjct: 282 RILKAANKLISNNLHYFKKKLF-SNLEYGNKIKVIIGKNEKNEAEKIADKIIHECSNDI- 339 Query: 2052 GRDFGKIAVLYRRQITGKAFQVSFRNRKIPFNVH-GVAFYRKKVIKAIMAILRTTLPGCD 2228 + A+LYR + + +F + IP+++ +F+ + IK +++ LR + D Sbjct: 340 -MQYKDYAILYRGNYQSQILEKTFLKKNIPYDISTNSSFFSRPEIKDLLSYLRLIVNPDD 398 Query: 2229 DGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRAQITQ 2408 + + ++IL ++ ++ +E+++ + S + DI K+ + Sbjct: 399 NHAF---IRILNIPHRQIGLTTLNKLEELASKKNKSLFQISNDIEIKKI------LRERT 449 Query: 2409 GRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDND------GGKLLNE 2570 +K+ +Y + K ++ ++L + +L+K I ND K+L E Sbjct: 450 VKKIKDFIYWIKKIIKL------------SLLKEDIILDK---IINDIKYELWLTKILKE 494 Query: 2571 DNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRE-TENFRSR 2747 I++ + + LS ++ E+ L + ++LR+ E Sbjct: 495 PKKIKTSINNIYT-----LSNWLKEMLRGNEFEK---PMNLLQIVKKMTLRDILEKKIQI 546 Query: 2748 KEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYV 2927 E KN + L T+H SKGLE+ VFI+ +N+ +P + N +EEERRL YV Sbjct: 547 NEIPKNRVQLMTLHSSKGLEFSSVFIIGMNEGILPNIKSINND------NIEEERRLTYV 600 Query: 2928 AMTRARKKLYILHV-TIDSHRQLL--PPSRFLREIPGHLLDIQGE 3053 MTRARK+L+ + T + Q L PSRFL E+P D+Q E Sbjct: 601 GMTRARKELFFTYCQTRIQYGQKLYTAPSRFLFELPQE--DLQWE 643
>P09980:REP_ECOLI ATP-dependent DNA helicase rep - Escherichia coli| Length = 673 Score = 213 bits (543), Expect = 4e-54 Identities = 196/686 (28%), Positives = 322/686 (46%), Gaps = 8/686 (1%) Frame = +3 Query: 993 LNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTAAAS 1169 LN Q++A V P +++AG GSGKT + ++ L++ G +I A+TFT AA Sbjct: 3 LNPGQQQA-VEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAR 61 Query: 1170 EMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVE-A 1346 EM++R+G +G+ A+ ++ISTFH+ L + + LG + F ++ Q + E Sbjct: 62 EMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELT 121 Query: 1347 ERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGDLTGA 1526 E L+E K ++Q I N D LK +QA +S D A Sbjct: 122 EGLIEDDKV-----LLQQLISTISNWKND-----LKTPSQAAASAIGER------DRIFA 165 Query: 1527 SILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYF 1706 Y+ L +CN LD+ D I LL + EV K Q + ++VDE+QDT+ QY Sbjct: 166 HCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRKRWQNKIRYLLVDEYQDTNTSQYE 225 Query: 1707 LLKLLA-SHNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTRAIVE 1883 L+KLL S T+VGD+DQSI+S+ GA +DFP K I+L +NYRS+ I++ Sbjct: 226 LVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILK 285 Query: 1884 AATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSSAEGRDF 2063 AA LI NN + K + ++ G+++ V ++E+ + V ++I + Sbjct: 286 AANILIANNPH-VFEKRLFSELGYGAELKVLSANNEEHEAERVTGELI--AHHFVNKTQY 342 Query: 2064 GKIAVLYRRQITGKAFQVSFRNRKIPFNVH-GVAFYRKKVIKAIMAILRTTLPGCDDGPW 2240 A+LYR + F+ +IP+ + G +F+ + IK ++A LR DD + Sbjct: 343 KDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAF 402 Query: 2241 RQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDI-FSAKVSGTFKRAQITQGRK 2417 L+I+ +E + + + ++ R S +A+ D+ S +SG A + Sbjct: 403 ---LRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEAL----TR 455 Query: 2418 VLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDNDIRSVLQ 2597 L + + ERE ++A+ M D L E + + Sbjct: 456 FTHWLAEIQRLAERE-PIAAVRDLIHGM---------------DYESWLYETSPSPKAAE 499 Query: 2598 FLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEENKNSITL 2777 M +V+ S G+ E TL + +LR+ R EE + + L Sbjct: 500 MRMKNVNQLFSWMTEMLEGSELDE----PMTLTQVVTRFTLRDMME-RGESEEELDQVQL 554 Query: 2778 TTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMTRARKKL- 2954 T+H SKGLE+ V++V + + +P + ++ E ++EERRL YV +TRA+K+L Sbjct: 555 MTLHASKGLEFPYVYMVGMEEGFLP----HQSSIDED--NIDEERRLAYVGITRAQKELT 608 Query: 2955 YILHVTIDSHRQLL--PPSRFLREIP 3026 + L + +L+ PSRFL E+P Sbjct: 609 FTLCKERRQYGELVRPEPSRFLLELP 634
>P44804:REP_HAEIN ATP-dependent DNA helicase rep - Haemophilus influenzae| Length = 670 Score = 212 bits (540), Expect = 9e-54 Identities = 183/685 (26%), Positives = 322/685 (47%), Gaps = 7/685 (1%) Frame = +3 Query: 993 LNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTAAAS 1169 LN +Q++A V P +++AG GSGKT ++ ++ L+++ G SP I A+TFT AA Sbjct: 3 LNPQQQQA-VEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAR 61 Query: 1170 EMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAE 1349 EM++R+ +GK +K +++STFH+ + + + LG S ++ Q + E Sbjct: 62 EMKERVAHSIGKEQSKGLLVSTFHTLGFDILKREYKALGFKSNMTLFDEHDQFALLKELT 121 Query: 1350 RLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGDLTGAS 1529 D +K+ D D+ W + K + + + + T A Sbjct: 122 -----------ADVLKE-DKDLLRELISVISNWKNDLISPKQAFALARDAKYQ---TFAK 166 Query: 1530 ILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYFL 1709 Y + + NALD+ D I L + EV + Q + ++VDE+QDT+ QY L Sbjct: 167 CYERYATQIRTYNALDFDDLIMLPTLLFKQNEEVRSKWQAKIRYLLVDEYQDTNTSQYEL 226 Query: 1710 LKLLASHNH-ITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTRAIVEA 1886 +KLL T+VGD+DQSI+S+ GA R DFP I+L +NYRST+ I+ Sbjct: 227 IKLLVGDRACFTVVGDDDQSIYSWRGARPENMVRLRDDFPRLNVIKLEQNYRSTQRILHC 286 Query: 1887 ATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKII-ETTSSSAEGRDF 2063 A LI NN + KL T G K+ V E +E+ + ++ ++I S + +D+ Sbjct: 287 ANILIDNNEHVFDKKLFSTIG-KGEKLLVIEAKNEEHEAERIVAELIAHRFSRKTKYKDY 345 Query: 2064 GKIAVLYRRQITGKAFQVSFRNRKIPFNVH-GVAFYRKKVIKAIMAILRTTLPGCDDGPW 2240 A+LYR + + +IP+ + G +F+ + IK +MA LR + DD + Sbjct: 346 ---AILYRGNHQSRLLEKVLMQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAF 402 Query: 2241 RQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRAQITQGRKV 2420 L+I+ +E + + +++ + S A IF ++ +K Sbjct: 403 ---LRIVNTPKREIGTATLQKLGELAQEKHISLFEA---IFEFELIQRITPKAYDSLQKF 456 Query: 2421 LSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDNDIRSVLQF 2600 + L+ ++R + A+ S + ++YL E ++ +++ + Sbjct: 457 GRWIVELNDEIQRSEPERAVRSMLSAIHYEEYLYE--YATSPKAAEMQSKN------VAT 508 Query: 2601 LMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEENKNSITLT 2780 L D V+D L + +E L + ++LR+ R +++ + + L Sbjct: 509 LFDWVADML-----------KGDETNEPMNLNQVVTRLTLRDMLE-RGEDDDDSDQVQLM 556 Query: 2781 TIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMTRARKKL-Y 2957 T+H SKGLE+ V+++ + + +P + ++ E +EEERRL YV +TRA+K+L + Sbjct: 557 TLHASKGLEFPYVYLIGMEEGILP----HQTSIDED--NVEEERRLAYVGITRAQKELTF 610 Query: 2958 ILHVTIDSHRQLL--PPSRFLREIP 3026 L + +L+ PSRFL E+P Sbjct: 611 SLCRERRQYGELVRPEPSRFLAELP 635
>Q89A21:REP_BUCBP ATP-dependent DNA helicase rep - Buchnera aphidicola subsp. Baizongia| pistaciae Length = 670 Score = 210 bits (534), Expect = 4e-53 Identities = 198/694 (28%), Positives = 331/694 (47%), Gaps = 17/694 (2%) Frame = +3 Query: 996 NDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTAAASE 1172 N+ Q++A S ++ P +I+AG GSGKT ++ +++ L+K P I A+TFT AA E Sbjct: 4 NEHQKKA-ISYISGPCLILAGAGSGKTRVIINKIVHLIKICHFDPKCITAITFTNKAACE 62 Query: 1173 MRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAER 1352 M+ RI V+ V+ + ISTFH+ L++ ++ E L S F I+ Sbjct: 63 MKSRILNVLSVNVSNLVKISTFHALGLEIIKSEIELLNIKSNFTIFD------------- 109 Query: 1353 LLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGDLTGASI 1532 E + L + V + D + W K+ P + K ++ +SI Sbjct: 110 --EQDQISILQEIVSKEDRSFVRQIRQSISNW-------KNKLLCPNQVNK---ISNSSI 157 Query: 1533 -------LRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTS 1691 YN L S N LD+ D I LL + + ++VDE+QDT+ Sbjct: 158 EFKFFRYYELYNAYLKSSNILDFDDLIFLPTILLRDNKLSRERWNDKIKYLLVDEYQDTN 217 Query: 1692 AMQYFLLKLLAS-HNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRST 1868 +QY L+KLL+S ++ T+VGD+DQSI+S+ GA++ F+S + D+PN + I + NYRS+ Sbjct: 218 FIQYKLIKLLSSKRSNFTLVGDDDQSIYSWRGANIHNFESLKHDYPNLRTIIMQHNYRSS 277 Query: 1869 RAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKI-IETTSSS 2045 I++ A ALI NN + + KL ++ GS + + +E+ + ++ + + ++ + Sbjct: 278 GRILKVANALISNNLHFFNKKLF-SNLDYGSIVEIISAKNEEDEARVILQTLMLHKSNYN 336 Query: 2046 AEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFNV-HGVAFYRKKVIKAIMAILRTTLPG 2222 A+ +D+ A+LYR K F+ KIP+ + ++F+ + IK ++A LR + Sbjct: 337 AQYKDY---AILYRSNYQVKIFEKFLIKFKIPYKILANISFFSRPEIKDLIAYLRLIINP 393 Query: 2223 CDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRAQI 2402 D+ + + + L G + +++ S R SF A+ DI + Sbjct: 394 DDNAAFLRVVNRPLRG---IGAVTLQKLKEWSKKRNQSFFMASLDIGLESI--------- 441 Query: 2403 TQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDNDI 2582 + L SL +FV Q++S I + P + L + A I + K L Sbjct: 442 ----LPVHNLKSLQEFVYLIQTISYQI----QLNPIEVLEKLVATIKYE--KWLMRSLKF 491 Query: 2583 RSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEE-- 2756 + + ++S L+ + +K +K ID IS +N S E+ Sbjct: 492 SKLYVASIKNISIVLNWIINELKYKIMNSKK---FVMKYLIDIISEFILQN--SLNEDIV 546 Query: 2757 -NKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAM 2933 N + + L T+H SKGLE+ VFIV V + +P Y T E ++EERRL YV + Sbjct: 547 INNDYVQLMTLHASKGLEFLYVFIVGVEEGVLPY---YRNTTMEN--NIDEERRLAYVGI 601 Query: 2934 TRARKKLYILHVTIDSHRQLL---PPSRFLREIP 3026 TRA+KKL++ + ++ PSRFLRE+P Sbjct: 602 TRAQKKLFLSYAIQRCQYGVVINTKPSRFLRELP 635
>Q9L6S1:REP_SALTY ATP-dependent DNA helicase rep - Salmonella typhimurium| Length = 674 Score = 207 bits (527), Expect = 3e-52 Identities = 190/686 (27%), Positives = 318/686 (46%), Gaps = 8/686 (1%) Frame = +3 Query: 993 LNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTAAAS 1169 LN Q+ A V P +++AG GSGKT + ++ L++ G +I A+TFT AA Sbjct: 3 LNPGQQHA-VEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAR 61 Query: 1170 EMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVE-A 1346 EM++R+G +G+ A+ ++ISTFH+ L + + LG S F ++ Q + E Sbjct: 62 EMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQVALLKELT 121 Query: 1347 ERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGDLTGA 1526 E L+E K ++Q I N D K+ Q + + D A Sbjct: 122 EGLIEDDKV-----LLQQLISTISNWKND-----------LKTPAQAAAGAKGERDRIFA 165 Query: 1527 SILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYF 1706 Y+ + +CN LD+ D I LL + EV + Q + ++VDE+QDT+ QY Sbjct: 166 HCYGLYDAHMKACNVLDFDDLILLPTLLLQRNDEVRERWQNKIRYLLVDEYQDTNTSQYE 225 Query: 1707 LLKLLASHN-HITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTRAIVE 1883 L+KLL T+VGD+DQSI+S+ GA +DFP + I+L +NYRS+ I++ Sbjct: 226 LVKLLVGQRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALQVIKLEQNYRSSGRILK 285 Query: 1884 AATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSSAEGRDF 2063 AA LI NN + K + ++ G+++ V ++E+ + V ++I + Sbjct: 286 AANILIANNPH-VFEKRLFSELGYGAELKVLSANNEEHEAERVTGELI--AHHFVNKTQY 342 Query: 2064 GKIAVLYRRQITGKAFQVSFRNRKIPFNVH-GVAFYRKKVIKAIMAILRTTLPGCDDGPW 2240 A+LYR + F+ +IP+ + G +F+ + IK ++A LR DD + Sbjct: 343 KDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAF 402 Query: 2241 RQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDI-FSAKVSGTFKRAQITQGRK 2417 L+I+ +E + + + ++ R S +A+ D+ S K++G + Sbjct: 403 ---LRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTG----RGYDSLTR 455 Query: 2418 VLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDNDIRSVLQ 2597 L + + ERE V+A+ + + D L E + + Sbjct: 456 FTHWLGEIQRLAERE-PVAAV---------------RDLIHGIDYESWLYETSPSPKAAE 499 Query: 2598 FLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEENKNSITL 2777 M +V+ S G E TL + +LR+ R EE + + L Sbjct: 500 MRMKNVNQLFSWMTEMLEGNELDE----PMTLTQVVTRFTLRDMME-RGESEEELDQVQL 554 Query: 2778 TTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMTRARKKL- 2954 T+H SKGLE+ V++V + + +P + ++ E +EEERRL YV +TRA+K+L Sbjct: 555 MTLHASKGLEFPYVYMVGMEEGFLP----HQSSIDED--NIEEERRLAYVGITRAQKELT 608 Query: 2955 YILHVTIDSHRQLL--PPSRFLREIP 3026 + L + +L+ PSRFL E+P Sbjct: 609 FTLCKERRQYGELVRPEPSRFLLELP 634
>P57654:REP_BUCAI ATP-dependent DNA helicase rep - Buchnera aphidicola subsp.| Acyrthosiphon pisum (Acyrthosiphon pisum symbiotic bacterium) Length = 645 Score = 207 bits (526), Expect = 4e-52 Identities = 189/679 (27%), Positives = 318/679 (46%), Gaps = 16/679 (2%) Frame = +3 Query: 1038 PLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTAAASEMRDRIGAVVGKAVA 1214 P +I+AG GSGKT ++ +++ L+ P NI A+TFT AA EMR R+ + Sbjct: 17 PCLILAGAGSGKTKVIINKIIYLINHCQYEPDNIAAVTFTNKAAYEMRIRLSKYLNIPEI 76 Query: 1215 KEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGKSDGLGDAV 1394 K+IIISTFHS L++ + + L + F + Q + Sbjct: 77 KKIIISTFHSLGLEIIKKEIDALELNNNFTLLDEKDQILLLK------------------ 118 Query: 1395 KQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYE----KKGDLTGASILRHYNEILVS 1562 K C +IKN+ + KK ++ K+ TP + + + A + Y L Sbjct: 119 KICKKEIKNNIQ-LLKKLNFMISYWKNKFLTPLQVQLLAKSSQEKDFAYVYEQYTNYLYK 177 Query: 1563 CNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYFLLKLLASHNH-I 1739 N LD+ D I LL ++ Q ++VDE+QDT+ QY L+K+LA+ N Sbjct: 178 ANILDFDDLICMPTLLLKNNKKIKIRWQKKISYLLVDEYQDTNNSQYELIKMLANKNSDF 237 Query: 1740 TIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTRAIVEAATALIRNNTNR 1919 T+VGD+DQSI+S+ GA+ ++DFPN K I++ NYRS+ I++AA +LI NN + Sbjct: 238 TLVGDDDQSIYSWRGANPQNIFLLKKDFPNLKIIKMEHNYRSSGRILKAANSLIANNIHY 297 Query: 1920 CHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKII-ETTSSSAEGRDFGKIAVLYRRQI 2096 KL + G+ I V +E+++ ++ KII + + RDF A+LYR Sbjct: 298 LEKKLF-SQLKYGNLIKVLIGKNEENEAQKIVKKIISQYAKKKIKYRDF---AILYRGNY 353 Query: 2097 TGKAFQVSFRNRKIPFNV-HGVAFYRKKVIKAIMAILRTTLPGCDDGPWRQALKILLPGD 2273 + + + IP+N+ +F+ + IK +++ LR + D+ + + + I Sbjct: 354 QSRILEKALIKENIPYNISEKSSFFSRPEIKDLLSYLRVVINRDDNHAFMRIVNI---PS 410 Query: 2274 KEEKKKIIDHVEKISLARKCSFISAATDIFSAKV--SGTFKRAQITQGRKVLSTLYSLSK 2447 ++ K + +E+ + + S A+ +I K T K K+ + + + K Sbjct: 411 RQIGKTTLKKLEEWANKKHVSLFQASNNIEIKKFLNENTIK--------KIKNFISKIEK 462 Query: 2448 FVERE-QSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDNDIRSVLQFLMDDV--S 2618 F S II + L + L K D K+ N N++ ++ Q+ + + Sbjct: 463 FTAWSCLKPSNIIDDIVDDLEYEKWLSK---FLKDPNKIKNSINNVHTLSQWFKNMIKGD 519 Query: 2619 DFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEENKNSITLTTIHQSK 2798 DF EK TL + +++R+ + KE+ ++ + L T+H SK Sbjct: 520 DF---------------EK--PMTLFQIVTRMTIRDILDDNIIKEQ-QDRVQLMTLHASK 561 Query: 2799 GLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMTRARKKLYILH-VTI 2975 GLE+ VFI+ + + +P + +EEERRL YV +TRA+K+L+ + Sbjct: 562 GLEFPAVFIIGMCEGILPNQKSIDND------NIEEERRLTYVGITRAKKQLFFTYCYKR 615 Query: 2976 DSHRQLLP--PSRFLREIP 3026 + Q+L PSRFL E+P Sbjct: 616 TQYGQILDMLPSRFLFELP 634
>Q10213:SRS2_SCHPO ATP-dependent DNA helicase srs2 - Schizosaccharomyces pombe (Fission| yeast) Length = 887 Score = 190 bits (482), Expect = 5e-47 Identities = 185/690 (26%), Positives = 316/690 (45%), Gaps = 30/690 (4%) Frame = +3 Query: 981 YLHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLL-KEGISPSNILAMTFTT 1157 YL LN++QR S I+AGPGSGKT + RV LL K I+ +++ TFT Sbjct: 7 YLKFLNEEQR-ISVQSPHKYTQILAGPGSGKTRVLTARVAYLLQKNHIAAEDLIIATFTN 65 Query: 1158 AAASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAI 1337 AA+E++ RI A++G + A ++I TFHS + + + +G +S ++I + + Sbjct: 66 KAANEIKLRIEAILGNSEASKLISGTFHSIAYKYLVKYGKHIGLSSNWLIADRNDTQAIM 125 Query: 1338 VEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKA---KKWLKFVTQAKSSG--------- 1481 +RLL D++K+ I + + + + L +T+ KS+G Sbjct: 126 ---KRLL---------DSLKKAKNPIASGIRGQELTPQNALNRITKLKSNGLLVKPGMDQ 173 Query: 1482 --------QTPEEYEKKGDLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYK 1637 + P+E + + + R Y L N D+ D + + I LL K P+ Sbjct: 174 LSLINGLEEPPKELQSHQSV---ELYRLYQTSLWKNNLADFDDLLLNFILLLQKQPD--- 227 Query: 1638 ECQTTCQAIVVDEFQDTSAMQYFLLKLLASHNH-ITIVGDEDQSIFSFNGADVSGFDSFR 1814 C + I++DEFQDTS +QYFL+KLLA N ITIVGD DQSI+ F A++ + Sbjct: 228 -CVRNIKHILIDEFQDTSKIQYFLVKLLALQNSDITIVGDPDQSIYGFRSAEIRNLNQMS 286 Query: 1815 RDFPNHKEIRLNKNYRSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSED 1994 DF + + L +NYRS + I+E A ++I + +R K +++++ S K + + + Sbjct: 287 EDFEGTQVLHLERNYRSAKPILELALSIISQDKSR-PKKGLKSNHISSLKPHYRLFETNN 345 Query: 1995 SQCAFVIDKIIETTSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFNVHGV-AFYR 2171 + ++ +I S E + IA+L R ++ + + +P+ + GV F+ Sbjct: 346 KESYWIAREIKRIVGSCPELIFYNDIAILVRSSSLTRSLEHALSELGVPYRMVGVNKFFD 405 Query: 2172 KKVIKAIMAILRTTLPGCDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAA 2351 ++ I+ ++A LR L D ++++ + K ID + S R +F Sbjct: 406 REEIRDLIAYLR-VLANKDS---TSLIRVINVPPRNIGKTKIDRIIFESERRGLTFWQTL 461 Query: 2352 TDIFSAKVSGTFKRAQITQGRKVLSTLYSLSKFVEREQS-------VSAIISSAGNMLPQ 2510 ++ + + +R + + + S L S+SK R S ++ + Sbjct: 462 NEVKNENIL-LSQRNDKSFLKSLKSFLCSISKLENRYLSNGHSATLSDLLLGILSEIKYY 520 Query: 2511 QYLLEKRAVIDNDGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTAT 2690 +YL+ K + +N + V Q SD +S F T Sbjct: 521 EYLVRKNKETVEE-----KWENVMELVQQ------SDNISCIFYELDYKIST-----IVL 564 Query: 2691 LKAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYN 2870 L+ F+ I+L E +KE +T++T+H +KGLEW VVF+ + ++ IP Sbjct: 565 LQNFLTQIALVNEE----QKEGESQKVTISTLHAAKGLEWPVVFLPCLCENIIP------ 614 Query: 2871 GTVKEAGCTLEEERRLFYVAMTRARKKLYI 2960 L+EERRL YV TRA+ LY+ Sbjct: 615 ---HSRSDDLDEERRLLYVGATRAQALLYL 641
>P12954:SRS2_YEAST ATP-dependent DNA helicase SRS2 - Saccharomyces cerevisiae (Baker's| yeast) Length = 1174 Score = 160 bits (405), Expect = 4e-38 Identities = 188/758 (24%), Positives = 321/758 (42%), Gaps = 84/758 (11%) Frame = +3 Query: 993 LNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTL-LKEGISPSNILAMTFTTAAAS 1169 LN +QR A+ D L ++AGPG+GKT + RV L L I P +I+ TFT AA+ Sbjct: 15 LNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTNKAAN 74 Query: 1170 EMRDRIGAVVGKAVAK--EIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVE 1343 EM++R+ ++ A E++I TFHS CL++ + ++ I ++ V Sbjct: 75 EMKERLQEMLRGAGVNISELLIGTFHSICLKILYRFGHLVDLQKDWRII---DEKEIDVI 131 Query: 1344 AERLLEHGKSDGLGDAVKQCDGDIKNSFKDK-AKKWL-------KFVTQAKSSGQTPEEY 1499 + ++E D + D + K +W K +++ KS+ PEEY Sbjct: 132 LDDMIEK-VPDQIRDYASSITRKVNLCMPSKNGDEWTIHPKLIKKQISKLKSNAILPEEY 190 Query: 1500 --EKKGDLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVD 1673 + D + Y L N LD+ D + + LLT+ + + + ++VD Sbjct: 191 ILDSNHDAALGYFYQIYQSELSKKNTLDFDDLLMYTFRLLTRVRVL-----SNIKHVLVD 245 Query: 1674 EFQDTSAMQYFLLKLLASHNH-----ITIVGDEDQSIFSFNGADVSGFDSFRRDFP-NHK 1835 EFQDT+ +Q L+ L A NH +TIVGD DQSI++F A F R P + Sbjct: 246 EFQDTNGIQLDLMFLFAKGNHHLSRGMTIVGDPDQSIYAFRNALAHNFLEMGRKCPIEYS 305 Query: 1836 EIRLNKNYRSTRAIVEAATALI-RNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFV 2012 I L +NYRS++ I+ + LI + N R + + + + + Sbjct: 306 TIILVENYRSSQKILNTSEILITQQNKGRQNRAPLRAQFDLDFPPVYMNFPAYFLEAPSL 365 Query: 2013 IDKIIETTSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN-VHGVAFYRKKVIKA 2189 + +++ + F A+L R++ K + + +IP+ + G +F+ K +A Sbjct: 366 VRELL-YLKALPNLFTFNDFAILVRQRRQIKRIESALIEHRIPYKIIRGHSFWDSKETRA 424 Query: 2190 IMAILRTTLPGCDDGPWRQAL----KILLPGDKEEKKKIIDHVEKISLARKCSFISAATD 2357 ++ +L+ D +L + L P E+ K +D +LA S D Sbjct: 425 MLNLLKLIFSPNDKHAILASLLYPARGLGPATGEKIKNALD-----TLATDVSCFQILKD 479 Query: 2358 IFSAKVSGTFKRAQITQGRKVLSTLYSLSKFVEREQSV--SAIISSAGNMLPQQYLLE-- 2525 I S K+ T+GR V++ S+ +E Q + S ++ ++ + Y L Sbjct: 480 ISSKKIMLDIP----TKGRSVIADFISM---IENCQLLLQSTLLGGLSDLFDKLYELSGL 532 Query: 2526 KRAVIDNDGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKA-- 2699 K + DG K ++ L + L +F + S++ +K +KA Sbjct: 533 KYEYLYKDGKKKNDQLEKSEPNLLNARHKNIELLKNYFLALLSKSESSDKEKNEAIKAAT 592 Query: 2700 -------------------FIDYISLRETENFRSRKEENKNS---------ITLTTIHQS 2795 F + +SL E NK++ +T++TIH + Sbjct: 593 DEAEPIENKVITPKEYLRNFFNSLSLHSDAAEEEESESNKDAKIKREKNGFVTISTIHGA 652 Query: 2796 KGLEWDVVFIVQVNDSEIPLL--------------HEYNGTVKEAG----------CTLE 2903 KGLEW VVFI + IP + + + K+A +++ Sbjct: 653 KGLEWPVVFIPGCEEGIIPCVFNDDKKDESEEDEEEDQENSKKDASPKKTRVLSVEDSID 712 Query: 2904 EERRLFYVAMTRARKKLYILH-VTIDSHRQLLPPSRFL 3014 EERR+F+VA TRA+ LY+ + VT++ + SRFL Sbjct: 713 EERRMFFVAQTRAKYLLYLSNTVTVEDVDRPRIASRFL 750
>P75437:UVRD_MYCPN Probable DNA helicase II homolog - Mycoplasma pneumoniae| Length = 715 Score = 158 bits (399), Expect = 2e-37 Identities = 183/692 (26%), Positives = 308/692 (44%), Gaps = 15/692 (2%) Frame = +3 Query: 993 LNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEG-ISPSNILAMTFTTAAAS 1169 LN +QR A V + + +G G+GKT+ + R L + I+PSNILA+T+T AAS Sbjct: 9 LNKEQRAAVTCGKGVNI-VYSGAGTGKTTIISQRFAYLFNQKRINPSNILALTYTRKAAS 67 Query: 1170 EMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAE 1349 EM+ RI ++ + K++ I TFHSFC + R +K F+I E Sbjct: 68 EMKQRILELLPEKYHKDVNIYTFHSFCSRFLREEGQK-----NFVIDDDLSNFLKDFLKE 122 Query: 1350 RLLEHGKSDGLGDAVKQCDGDIK-NSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGDLTGA 1526 L+ K + D K D NS KD + V + E + T Sbjct: 123 SELKSQKVLQIIDGFKNAYFDFDTNSLKDDER----LVELCEFHLDPQERNFQLFKETAI 178 Query: 1527 SILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYF 1706 + Y + N +D+ D + + TLL+K ++ ++ Q I+ DEFQDT+ +QY Sbjct: 179 AAFVEYEKGKQQNNKIDFADLLIKTCTLLSKDHKLLRKWSKKFQYILGDEFQDTNQIQYE 238 Query: 1707 LLKLLASHN-HITIVGDEDQSIFSFNGADVSGFDSFRRDFP--NHKEIRLNKNYRSTRAI 1877 L+K+LASH+ ++ +VGD +Q I+ + GA DS + DF E + +NYR + I Sbjct: 239 LIKMLASHHQNLFLVGDNNQMIYRWRGAVSDIIDSLKSDFKVRPENEFYITQNYRCDQNI 298 Query: 1878 VEAATALIRNNTNRCHHKLVETDNPSG--------SKITVK-ECHSEDSQCAFVIDKIIE 2030 + A +++ + K + D+ G +++ V + S + Q +++I+KI Sbjct: 299 LTVANSIL----GTIYAKENQPDSTKGFLFSAIKSNRLPVYFQASSVEGQHSWIINKIKN 354 Query: 2031 TTSSSAEGRDFGKIAVLYRRQITGKAFQVSFR-NRKIPFNVHGVAFYRKKVIKAIMAILR 2207 + G + +A+L+R + + + IP + F + + K ++ L Sbjct: 355 LHKN--HGIQYKDMAILFRTNRNMDSMTEALEADGSIPLKQNKGFFKQLETFKKVLVALI 412 Query: 2208 TTLPGCDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTF 2387 T + + ALK L K + + E+++L + + A + Sbjct: 413 TR----SNYDIKLALKSLRVWPNVLNKSLTVN-EQVNLDKILQNLEQAIFL------DEH 461 Query: 2388 KRAQITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLN 2567 R ++T+ KV + L KFVE +Q + + + + Q++ Sbjct: 462 TRGELTEAAKVFTRLI---KFVEEQQFEALLAFTFEALNTDQFVC--------------- 503 Query: 2568 EDNDIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSR 2747 N I LQ L QTE K T T FI+ + ++ E Sbjct: 504 --NFIFRTLQKL-------------------QTENKNFTIT--DFINELRFQQDE----L 536 Query: 2748 KEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYV 2927 K+ N I L T+H +KGLE++ VFI +N PL + + + L +E RLFYV Sbjct: 537 KQSKDNVINLITVHSAKGLEFEAVFIYGINQDNFPL--KSKNQIIDLQREL-DELRLFYV 593 Query: 2928 AMTRARKKLYILHVTIDSHRQLLPPSRFLREI 3023 A+TRA+K L++L V +++ PS+F+R I Sbjct: 594 ALTRAKKYLFLLSV-YQMSGEIIYPSKFIRFI 624
>P75438:Y340_MYCPN Probable DNA helicase MPN340 - Mycoplasma pneumoniae| Length = 529 Score = 132 bits (332), Expect = 1e-29 Identities = 111/379 (29%), Positives = 190/379 (50%), Gaps = 10/379 (2%) Frame = +3 Query: 984 LHSLNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKE-GISPSNILAMTFTTA 1160 + LN +Q+ A D V + + +G G+GKT+ + R L+ E G++P +ILA TFT Sbjct: 1 MEHLNQEQKAAVTCDNGVNV-VYSGAGTGKTTVIAERFAYLVNEKGVNPQSILAFTFTDK 59 Query: 1161 AASEMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEK----LGRTSEFII-YGHGQQ 1325 AASEMR RI ++ + +++ I TFHSF + + H + L ++ F Y G Q Sbjct: 60 AASEMRQRIIKLIPQKSLQDLHIYTFHSFANRFLQKHGKSDFAILSDSNRFFSDYEMGDQ 119 Query: 1326 RRAIVEA-ERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYE 1502 + +VE + + + D L + ++F+D S+GQ + Sbjct: 120 LQTVVEIYKNKVVDLELDNL---------EYNSAFRDACTDTFNEDFSTISNGQ----FR 166 Query: 1503 KKGDLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQ 1682 K+ A+ LR Y L++ N D+ D I + LL E+ + + I+VDEFQ Sbjct: 167 KR----AATALRAYQNYLITNNLFDFSDLIIETCHLLKGNSELLQAFTESVHYILVDEFQ 222 Query: 1683 DTSAMQYFLLKLLA-SHNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNY 1859 DT+ QY L+KLLA +H ++ +VGD +Q I+ + GA V F+ + DF KE +NY Sbjct: 223 DTNLAQYELVKLLATTHPNLFLVGDSNQMIYGWRGAVVEIFELLKNDFQAVKEFYTTQNY 282 Query: 1860 RSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITV--KECHSEDSQCAFVIDKIIET 2033 RS +A++ A ++ + LV + SK + +S +Q ++I ++ + Sbjct: 283 RSIQAVLAVANDVLTAIARKERKALVLLHSSIDSKAVPVHYKANSLKNQDQWIIYQMKQL 342 Query: 2034 TSSSAEGRDFGKIAVLYRR 2090 ++ G + ++AVL+R+ Sbjct: 343 HLNN--GVPYDQMAVLFRK 359 Score = 64.7 bits (156), Expect = 3e-09 Identities = 37/93 (39%), Positives = 58/93 (62%) Frame = +3 Query: 2769 ITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMTRARK 2948 + L TIH +KGLE++ VF+ + + P LH ++G+ K L EE +LFYVA+TRA++ Sbjct: 381 LNLLTIHAAKGLEFEAVFVYGLVERAFPSLH-WDGSDKHK---LLEEMKLFYVAITRAKQ 436 Query: 2949 KLYILHVTIDSHRQLLPPSRFLREIPGHLLDIQ 3047 L+++ V+++S PSRFL+ I L Q Sbjct: 437 FLFLVSVSVESFNAYYEPSRFLKLIEKEHLQTQ 469
>P47486:UVRD_MYCGE Probable DNA helicase II homolog - Mycoplasma genitalium| Length = 703 Score = 125 bits (314), Expect = 1e-27 Identities = 112/389 (28%), Positives = 195/389 (50%), Gaps = 23/389 (5%) Frame = +3 Query: 993 LNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLL-KEGISPSNILAMTFTTAAAS 1169 +N++Q++A V + + +G G+GKT+ + R L+ KE + PS ILA+TFT AA Sbjct: 1 MNEQQKQAISCGKGVNV-VYSGAGTGKTTIITNRFAYLVNKEKVDPSRILAITFTKKAAK 59 Query: 1170 EMRDRIGAVVGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAE 1349 EM+ RI ++ ++A++ I TFHSFC ++F+I ++R I++ + Sbjct: 60 EMQFRILKLIDSSLAEKTNIYTFHSFC--------------NKFLI--QTLKKRFIIDDD 103 Query: 1350 RLLEHGKSDGLGDA------VKQCDGDIKNSFKD----KAKKWLKFVTQAKSS-GQTPEE 1496 + + + L D+ KQ + KN+F D K + + ++ + S EE Sbjct: 104 --ISYFLKEFLADSKLDINLAKQIIDNFKNTFADFEINKLDQDERLISLCEHSLLNKDEE 161 Query: 1497 YEK-KGDLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVD 1673 Y K L A I N+IL N LD+HD + + LL+ ++ + Q I+VD Sbjct: 162 YSTLKTQLINAFISYEKNKIL--NNKLDFHDLLIKTCNLLSNDNDLLNQWSEQFQHILVD 219 Query: 1674 EFQDTSAMQYFLLKLLASHN-HITIVGDEDQSIFSFNGADVSGFDSFRRDF--PNHKEIR 1844 EFQDT+ +QY L+K+L + N ++ +VGD +Q I+ + GA + + DF P E Sbjct: 220 EFQDTNQIQYELIKMLVTKNKNLFLVGDNNQMIYRWRGAVNGIITALKHDFNVPKSNEFF 279 Query: 1845 LNKNYRSTRAIVEAATALIRNNTNRCHHKLVETDN-------PSGSKITVKECHSEDSQC 2003 +N+NYR + I+ A ++ + K V+T+ S K + S ++Q Sbjct: 280 INQNYRCDQNILAVANQILLK--IMAYEKQVKTEKNLLFSTLNSDKKPVYFQAESVENQA 337 Query: 2004 AFVIDKIIETTSSSAEGRDFGKIAVLYRR 2090 ++ +KI + E +F +A+L+R+ Sbjct: 338 NWIFNKI--KALNQTEKINFKDMAILFRK 364 Score = 62.0 bits (149), Expect = 2e-08 Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 1/150 (0%) Frame = +3 Query: 2688 TLKAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEY 2867 +L FI ++L F S E + ++I L T+H +KGLE++ VFI +N + PL Sbjct: 509 SLSEFITSLALE----FDSIIENSSDTINLLTVHAAKGLEFEAVFIYGMNQGDFPLFLSQ 564 Query: 2868 NGTVKEAGCTLEEERRLFYVAMTRARKKLYILHVTIDSHRQLLPPSRFLREI-PGHLLDI 3044 N ++ L +E +LFYVA+TRA++ L+I V + + + PS FL I LDI Sbjct: 565 NQNDEQ---HLIDELKLFYVAITRAKRFLFITAV-LQINNNSIKPSSFLNYINKSEYLDI 620 Query: 3045 QGEGAAIKYHGQPSGDISFDHAEGETSTEK 3134 A I Y + D FD + T+K Sbjct: 621 ----ATINYVLEQDDDF-FDSTKKTDYTKK 645
>P64320:UVRD_MYCTU Probable DNA helicase II homolog - Mycobacterium tuberculosis| Length = 700 Score = 116 bits (290), Expect = 9e-25 Identities = 118/433 (27%), Positives = 195/433 (45%), Gaps = 26/433 (6%) Frame = +3 Query: 993 LNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEG-ISPSNILAMTFTTAAAS 1169 L+D+QREA + P+ ++AG G+GKT T+ R+ +L+ G ++ +LA+TFT AA Sbjct: 12 LDDQQREAVLAPRG-PVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRAAG 70 Query: 1170 EMRDRIGAV-----VGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRA 1334 EMR R+ A+ G V + TFH+ + R ++ + + + + A Sbjct: 71 EMRSRLRALDAAARTGSGVGA-VQALTFHAAAYRQLRYFWSRVIADTGWQLL---DSKFA 126 Query: 1335 IVE--AERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEY--- 1499 +V A R H +D + D G+I+ W AK+S PEEY Sbjct: 127 VVARAASRTRLHASTDDVRDLA----GEIE---------W------AKASLIGPEEYVTA 167 Query: 1500 ----EKKGDLTGASILRHYNEILV------SCNALDYHDFINSSITLLTKFPEVYKECQT 1649 + L A I Y+E LD+ D + + + V +E Q Sbjct: 168 VAAARRDPPLDAAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQD 227 Query: 1650 TCQAIVVDEFQDTSAMQYFLLKL-LASHNHITIVGDEDQSIFSFNGADVSGFDSFRRDFP 1826 + VVDE+QD + +Q +L L + +T+VGD +Q+I+SF GA F R FP Sbjct: 228 RYRCFVVDEYQDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFP 287 Query: 1827 NHKEIRLNKNYRSTRAIVEAATALIRNNTNR-CHHKL-VETDNPSGSKITVKECHSEDSQ 2000 + +RL ++YRST +V A +I R KL + G + E E ++ Sbjct: 288 DAAVVRLERDYRSTPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAE 347 Query: 2001 CAFVIDKIIETTSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFNVHGVA--FYRK 2174 A V I +S G ++A+LYR + ++ + I + V G F R+ Sbjct: 348 AATVAASIARLIAS---GTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQ 404 Query: 2175 KVIKAIMAILRTT 2213 ++ +A++A+ R + Sbjct: 405 EIKQALLALQRVS 417 Score = 62.0 bits (149), Expect = 2e-08 Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Frame = +3 Query: 2769 ITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEY-NGTVKEAGCTLEEERRLFYVAMTRAR 2945 +TL ++H +KGLEWD VF+V + D +P+ H +G E +EEERRL YV +TRAR Sbjct: 496 VTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSE---PVEEERRLLYVGITRAR 552 Query: 2946 KKLYILHVTIDS--HRQLLPPSRFLREI 3023 L + S RQ PSRFL I Sbjct: 553 VHLALSWALSRSPGGRQSRKPSRFLNGI 580
>P64321:UVRD_MYCBO Probable DNA helicase II homolog - Mycobacterium bovis| Length = 700 Score = 116 bits (290), Expect = 9e-25 Identities = 118/433 (27%), Positives = 195/433 (45%), Gaps = 26/433 (6%) Frame = +3 Query: 993 LNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEG-ISPSNILAMTFTTAAAS 1169 L+D+QREA + P+ ++AG G+GKT T+ R+ +L+ G ++ +LA+TFT AA Sbjct: 12 LDDQQREAVLAPRG-PVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRAAG 70 Query: 1170 EMRDRIGAV-----VGKAVAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRA 1334 EMR R+ A+ G V + TFH+ + R ++ + + + + A Sbjct: 71 EMRSRLRALDAAARTGSGVGA-VQALTFHAAAYRQLRYFWSRVIADTGWQLL---DSKFA 126 Query: 1335 IVE--AERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEY--- 1499 +V A R H +D + D G+I+ W AK+S PEEY Sbjct: 127 VVARAASRTRLHASTDDVRDLA----GEIE---------W------AKASLIGPEEYVTA 167 Query: 1500 ----EKKGDLTGASILRHYNEILV------SCNALDYHDFINSSITLLTKFPEVYKECQT 1649 + L A I Y+E LD+ D + + + V +E Q Sbjct: 168 VAAARRDPPLDAAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQD 227 Query: 1650 TCQAIVVDEFQDTSAMQYFLLKL-LASHNHITIVGDEDQSIFSFNGADVSGFDSFRRDFP 1826 + VVDE+QD + +Q +L L + +T+VGD +Q+I+SF GA F R FP Sbjct: 228 RYRCFVVDEYQDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFP 287 Query: 1827 NHKEIRLNKNYRSTRAIVEAATALIRNNTNR-CHHKL-VETDNPSGSKITVKECHSEDSQ 2000 + +RL ++YRST +V A +I R KL + G + E E ++ Sbjct: 288 DAAVVRLERDYRSTPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAE 347 Query: 2001 CAFVIDKIIETTSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFNVHGVA--FYRK 2174 A V I +S G ++A+LYR + ++ + I + V G F R+ Sbjct: 348 AATVAASIARLIAS---GTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQ 404 Query: 2175 KVIKAIMAILRTT 2213 ++ +A++A+ R + Sbjct: 405 EIKQALLALQRVS 417 Score = 62.0 bits (149), Expect = 2e-08 Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Frame = +3 Query: 2769 ITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEY-NGTVKEAGCTLEEERRLFYVAMTRAR 2945 +TL ++H +KGLEWD VF+V + D +P+ H +G E +EEERRL YV +TRAR Sbjct: 496 VTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSE---PVEEERRLLYVGITRAR 552 Query: 2946 KKLYILHVTIDS--HRQLLPPSRFLREI 3023 L + S RQ PSRFL I Sbjct: 553 VHLALSWALSRSPGGRQSRKPSRFLNGI 580
>P53528:UVRD_MYCLE Probable DNA helicase II homolog - Mycobacterium leprae| Length = 714 Score = 112 bits (281), Expect = 9e-24 Identities = 119/436 (27%), Positives = 196/436 (44%), Gaps = 30/436 (6%) Frame = +3 Query: 993 LNDKQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEG-ISPSNILAMTFTTAAAS 1169 L+D+QREA + P+ ++AG G+GKT T+ R+ L+ G ++ +LA+TFT AA+ Sbjct: 12 LDDEQREAVLAPRG-PVCVLAGAGTGKTRTITHRIAHLVGAGHVATGQVLAVTFTQRAAA 70 Query: 1170 EMRDRIGAVVGKAVAKE----IIISTFHSFCLQLCRTHAEK-LGRTSEFIIYGHGQQRRA 1334 EMR R+ A+ A + + TFH+ + R + +G T ++ Sbjct: 71 EMRSRLRALGAAVQAVSDFGVVRVLTFHAAAHRQLRYFWPRVIGDTGWQLLDSKFATVAR 130 Query: 1335 IVEAERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGD 1514 + RL H +D + D G+I+ W AK+S PEEY Sbjct: 131 AASSVRL--HAGTDDVCDLA----GEIE---------W------AKASLIGPEEYVAAVA 169 Query: 1515 LTG----------ASILRHYNEILVSCNA------LDYHDFINSSITLLTKFPEVYKECQ 1646 G AS+ Y + N LD+ D + + + V +E + Sbjct: 170 AIGRDTPLDAAQIASVYAAYEALKARGNGVPGVTLLDFDDLLLHTAAAIENDAAVAEEFR 229 Query: 1647 TTCQAIVVDEFQDTSAMQYFLLKL-LASHNHITIVGDEDQSIFSFNGADVSGFDSFRRDF 1823 + VVDE+QD + +Q +L L + +T+VGD +Q+I+SF GA F R F Sbjct: 230 DRYRCFVVDEYQDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPCFLLDFPRRF 289 Query: 1824 PNHKEIRLNKNYRSTRAIVEAATALIRNNTNRCHHKLVET--DNPSGSKITVKECHSEDS 1997 P+ +RL ++YRST +V A +I R + G + E E + Sbjct: 290 PDATVVRLERDYRSTPQVVSLANQVIAAAHGRVADSKFQLSGQREPGPAASFHEYSDEPA 349 Query: 1998 QCAFV---IDKIIETTSSSAEGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFNVHGVA-- 2162 + A V I ++IE +S +E IAVLYR +A++ + I + V G Sbjct: 350 EAAAVAASIARLIEFGTSPSE------IAVLYRVNAQSEAYEEALTEVGIAYQVRGGEGF 403 Query: 2163 FYRKKVIKAIMAILRT 2210 F R+++ +A++A+ R+ Sbjct: 404 FNRQEIKQALLALQRS 419 Score = 58.9 bits (141), Expect = 2e-07 Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Frame = +3 Query: 2769 ITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEY-NGTVKEAGCTLEEERRLFYVAMTRAR 2945 +TL ++H KGLEWD VF+V + D +P+ +G E +EEERRL YV +TRAR Sbjct: 503 VTLASLHAVKGLEWDAVFLVGLADGTLPISRALAHGAESE---PVEEERRLLYVGITRAR 559 Query: 2946 KKLYILHV--TIDSHRQLLPPSRFLREI 3023 L + RQ PSRFL +I Sbjct: 560 VYLALSWALSRTPGGRQSRKPSRFLNDI 587
>P15038:HELD_ECOLI Helicase IV - Escherichia coli| Length = 684 Score = 97.8 bits (242), Expect = 3e-19 Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 29/357 (8%) Frame = +3 Query: 1041 LMIVAGPGSGKTSTMVGRVLTLLKEG-ISPSNILAMTFTTAAASEMRDRIGAVVGKAVAK 1217 L+++AG GSGKTS +V R LL G SP IL + F AA EM +RI + + Sbjct: 212 LLVLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE---RLHTE 268 Query: 1218 EIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGKSDGLG---- 1385 +I TFH+ L + + ++K+ S+ + I E + K+ G Sbjct: 269 DITARTFHALALHIIQQGSKKVPIVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQW 328 Query: 1386 ----------DAVKQCDGDIKNSFKDKAKKWLKFV-----TQAKSSGQTPEE----YEKK 1508 + D ++ + +W+ + QA+ PEE + K+ Sbjct: 329 LTEEMQWSVPEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR 388 Query: 1509 GDLTGASILRHYNEILVSCNALDYHDFINSSITLLTK--FPEVYKECQTTCQAIVVDEFQ 1682 L A +L+ + L + NA+D+ I+ +I +L K F +K I+VDEFQ Sbjct: 389 IKLM-APLLKAWKGALKAENAVDFSGLIHQAIVILEKGRFISPWKH-------ILVDEFQ 440 Query: 1683 DTSAMQYFLLKLLASHNHITI---VGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNK 1853 D S + LL L N T VGD+ Q+I+ F+GA +S +F +F + L+ Sbjct: 441 DISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDT 500 Query: 1854 NYRSTRAIVEAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKI 2024 YR I E A I+ N + L N +T+ ++SQ ++DK+ Sbjct: 501 TYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTL----LDESQLDALLDKL 553 Score = 37.4 bits (85), Expect = 0.50 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 7/75 (9%) Frame = +3 Query: 2760 KNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLE-------EERRL 2918 K I TIH SKG + D V IV + + ++ E EERRL Sbjct: 586 KLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPDAEERRL 645 Query: 2919 FYVAMTRARKKLYIL 2963 YVA+TRAR +++ L Sbjct: 646 MYVALTRARHRVWAL 660
>Q12039:HMI1_YEAST ATP-dependent DNA helicase HMI1, mitochondrial precursor -| Saccharomyces cerevisiae (Baker's yeast) Length = 706 Score = 84.0 bits (206), Expect = 5e-15 Identities = 140/699 (20%), Positives = 272/699 (38%), Gaps = 41/699 (5%) Frame = +3 Query: 1032 AVPLMIVAGPGSGKTSTMVGRVLTLLK-EGISPSNILAMTFTTAAASEMRDRIGAVVGKA 1208 A + ++AGPGSGKT T++ +VL L+ E I P IL + T A + + + ++ + Sbjct: 19 ASTIKVIAGPGSGKTLTLLYKVLHLITVENIKPEEILIFSLTNKAVDSIIENLLSIFENS 78 Query: 1209 VAKEIIISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGKSDGLGD 1388 + I+ + + HG R +VE E ++ + G Sbjct: 79 HTNKEIVHQIGCYTV--------------------HGLANRIVVENEGMINIIEEIGWRG 118 Query: 1389 AVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGDLTGASILRHYNEILVSCN 1568 +K + ++ K L+ V + +Y+ ++ E++ +C Sbjct: 119 LMKLLPPSKRTPHHFRSYKELEKVVK---------DYKLNNAKNNNPVIEKLVELMDNCK 169 Query: 1569 ALDYHDFI---------NSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYFLLKLL 1721 + D I +SS + + F + + + + +++DEFQD L+ ++ Sbjct: 170 VMTNDDLIIRAKKYLELDSSDSDASSFTQ---DLRNKYKVVLIDEFQDLYPSLAPLITMI 226 Query: 1722 ASHNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKE--IRLNKNYRSTRAIVEAATA 1895 + + GD +QSI+ F G++ P + ++L N+RST I+ A+ Sbjct: 227 CKGKQLIMFGDTNQSIYGFLGSNNEIMSQLDNLHPKNSTTVLKLFDNFRSTPEIISLASK 286 Query: 1896 LIR---------NNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKIIETTSSSA 2048 +I ++T+ +LV PSG + ++ F+IDKI + SSA Sbjct: 287 IINRPLAEKQIIDDTDETPSELVR-KLPSGVSPQIMTFDDLAAESEFIIDKITQLICSSA 345 Query: 2049 EGRDFGKIAVLYRRQITGKAFQVSFRNRKIPFN--VHGVAFYRKKVIKAIMAILRTTLPG 2222 + F IA+L R A + IP+ + I+ ++ IL+ Sbjct: 346 K---FSDIAILSRTNSHLTAIASILKKYGIPYQKLKSQPDWMDDLRIQFLLDILKVCSLA 402 Query: 2223 CDD---------GPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKV 2375 D+ W+ IL+ K I +L + CS + + + V Sbjct: 403 SDEKHNREFNTGDKWQSNFSILV---TMSALKGIGDASIQALYKACSLKNLSIWKYLTMV 459 Query: 2376 SGTFKRAQITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDND-- 2549 ++ +K+ + +L + +E +Q + LLEK A I N+ Sbjct: 460 PNFEWPLGLSIKKKMENYTSNLYEMIENDQ--------VHQLDDPMELLEKVASITNNLN 511 Query: 2550 -GGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSG---GASQTEEKGCTATLKAFIDYI- 2714 +D +S L+F TH S++ + + +K F++ Sbjct: 512 LNPTYFQSLSDAQSSLEF---------KTHLQEMAQVMKVSKSNKPPGISFVKWFLETYF 562 Query: 2715 --SLRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEA 2888 ++ ++ ++ + ++ L+TIH +KGLE+ +VF+ + S P+ Sbjct: 563 DQTMVFHQSQQALQTTGPGTVKLSTIHSAKGLEFPIVFLTNGSMSNFPM----------- 611 Query: 2889 GCTLEEERRLFYVAMTRARKKLYILHVTIDSHRQLLPPS 3005 + YV +TRAR LY+ ++ H +L+ S Sbjct: 612 ------DTNALYVGITRARNLLYMCNM---KHERLVSKS 641
>P23478:ADDA_BACSU ATP-dependent nuclease subunit A - Bacillus subtilis| Length = 1232 Score = 59.7 bits (143), Expect = 9e-08 Identities = 118/567 (20%), Positives = 216/567 (38%), Gaps = 93/567 (16%) Frame = +3 Query: 1572 LDYHDFINSSITLLT--------KFPEVYKECQTTCQAIVVDEFQDTSAMQYFLLKLLAS 1727 +D+ D + + +LT + E + Q ++VDE+QDT+ +Q +L+L+ S Sbjct: 366 IDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQFHEVLVDEYQDTNLVQESILQLVTS 425 Query: 1728 ----HNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNH-----KEIRLNKNYRSTRAIV 1880 ++ +VGD QSI+ F A+ F S + F ++I LNKN+RS I+ Sbjct: 426 GPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESGEGTGRKIDLNKNFRSRADIL 485 Query: 1881 EAATALIRN------------------------NTNRCHHKLVETDNPSGSKIT-----V 1973 ++ L + + + +L+ DN + + + Sbjct: 486 DSTNFLFKQLMGGKIGEVDYDEQAELKLGAAYPDNDETETELLLIDNAEDTDASEEAEEL 545 Query: 1974 KECHSEDSQCAFVIDKIIETTSSSAEGR-------DFGKIAVLYRRQITGKAFQVSFRNR 2132 + E A I K+I + +G+ + I +L R R + Sbjct: 546 ETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQ 605 Query: 2133 KIPFNVHGVAFYRKKVIKAI-MAILRTTLPGCDDGPWRQALKILLPGDKEEKKKIIDHVE 2309 IP + + Y + V A+ +++L+ D P L+ + G E + +I Sbjct: 606 GIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLEN 665 Query: 2310 KISLARKCSFISAATDIFSA--KVSGTFKRAQITQGR----KVLSTLYSLSKFVEREQSV 2471 K K + A D +A + +++ G + S +S+S+ + Sbjct: 666 K-----KAPYYEAMKDYLAAGDRSDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRD 720 Query: 2472 SAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSG 2651 + + G M GGK ++ L+ L D + ST F Sbjct: 721 TKYMDYVGGM---------------PGGK------QRQANLRVLYDRARQYESTAF---- 755 Query: 2652 GASQTEEKGCTATLKAFIDYISLRETENFRSR-KEENKNSITLTTIHQSKGLEWDVVFI- 2825 +G L+ FI+ + R + +R E ++ + L TIH SKGLE+ VVF+ Sbjct: 756 -------RGLFRFLR-FIERMQERGDDLGTARGLSEQEDVVRLMTIHSSKGLEFPVVFVA 807 Query: 2826 -------------------------------VQVNDSEIPLLHEYNGTVKEAGCTLEEER 2912 ++++ +PL+ +E L EE Sbjct: 808 GLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRE---LLSEEL 864 Query: 2913 RLFYVAMTRARKKLYILHVTIDSHRQL 2993 R+ YVA+TRA++KL+++ D +QL Sbjct: 865 RVLYVALTRAKEKLFLIGSCKDHQKQL 891 Score = 49.7 bits (117), Expect = 1e-04 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 18/95 (18%) Frame = +3 Query: 1041 LMIVAGPGSGKTSTMVGRVL---TLLKEGISPSNILAMTFTTAAASEMRDRIGAVVGK-- 1205 +++ A GSGKT+ +V R++ T + I +L +TFT A+A+EM+ RI + K Sbjct: 26 ILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKEL 85 Query: 1206 -------------AVAKEIIISTFHSFCLQLCRTH 1271 ++ IST HSFCLQ+ + + Sbjct: 86 VQRPGSLHIRRQLSLLNRASISTLHSFCLQVLKKY 120
>O84645:EX5B_CHLTR Exodeoxyribonuclease V beta chain - Chlamydia trachomatis| Length = 1026 Score = 57.8 bits (138), Expect = 4e-07 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 14/173 (8%) Frame = +3 Query: 1605 TLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYFLL-KLLASHNH---ITIVGDEDQSIF 1772 +LL V + + Q +++DEFQDT Q+ + KL AS ++ + ++GD QSI+ Sbjct: 347 SLLAHNDTVVSQLRKQFQLVLIDEFQDTDKRQWQIFSKLFASPDYSGSLFLIGDPKQSIY 406 Query: 1773 SFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTRAIVEAATALIRNNTNRCHHKLVETDNP 1952 + AD+ + + FP ++ L+ NYRST +++A L T +P Sbjct: 407 EWRNADLPTYLQAKHSFPKEAQLILDTNYRSTPELMQALNHLFSLPTPFLETPQNILYHP 466 Query: 1953 SGSKITVKECHSEDSQCAFVIDKIIETTS----------SSAEGRDFGKIAVL 2081 SK + + +SE S F + I+ + SA FG +AVL Sbjct: 467 LHSKGSAEISYSEFSPIHFFSSEDIQEETLWISKTASYLRSAYSIPFGNMAVL 519 Score = 43.9 bits (102), Expect = 0.005 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +3 Query: 2742 SRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDS--EIPLLHEYNGTVKEAGCTLEEERR 2915 S + ++N I +TT+H SKGLE+DVVF +N + + P +H R Sbjct: 681 SSQSNDENMIKITTVHSSKGLEYDVVFCSCLNKAKEKTPSVH----------------MR 724 Query: 2916 LFYVAMTRARKKLYI 2960 YVA TRA+K L+I Sbjct: 725 EMYVACTRAKKFLFI 739 Score = 38.1 bits (87), Expect = 0.29 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Frame = +3 Query: 1023 SDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGI--SPSNILAMTFTTAAASEMRDRIGAV 1196 + V+ + A G+GKT T+ VL L EG NIL +TFT AA +E++ RI A Sbjct: 11 ASVSGKFFLEASAGTGKTFTIEQVVLRSLLEGSIEQTKNILVVTFTNAATNELKLRIQAS 70 Query: 1197 VGKAVA 1214 + +A++ Sbjct: 71 LKQALS 76
>Q9PLT8:EX5B_CHLMU Exodeoxyribonuclease V beta chain - Chlamydia muridarum| Length = 1026 Score = 57.8 bits (138), Expect = 4e-07 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 4/102 (3%) Frame = +3 Query: 1605 TLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYFLL-KLLASHNH---ITIVGDEDQSIF 1772 +LL + V + + Q +++DEFQDT Q+ + KL AS ++ + ++GD QSI+ Sbjct: 347 SLLAQNDHVVSQLRKQFQLVLIDEFQDTDKRQWKIFSKLFASPDYSGSLFLIGDPKQSIY 406 Query: 1773 SFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTRAIVEAATAL 1898 + AD+ + + FP ++ L+ NYRST +++A L Sbjct: 407 EWRNADLPTYLQAKNSFPKESQLILDTNYRSTPQLMQALNHL 448 Score = 45.1 bits (105), Expect = 0.002 Identities = 30/83 (36%), Positives = 43/83 (51%) Frame = +3 Query: 2742 SRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLF 2921 S + + N + +TT+H SKGLE+DVVF +N VKE ++ R Sbjct: 681 SSQSNDDNVLKITTVHSSKGLEYDVVFCSSLN------------KVKEKSPSV--HMREM 726 Query: 2922 YVAMTRARKKLYILHVTIDSHRQ 2990 YVA TRA+K L+I +I+ Q Sbjct: 727 YVACTRAKKFLFIPFSSIEKRLQ 749 Score = 35.0 bits (79), Expect = 2.5 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = +3 Query: 1023 SDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGI--SPSNILAMTFTTAAASEMRDRI 1187 + V+ + A G+GKT T+ +L L EG NIL +TFT AA +E++ RI Sbjct: 11 TSVSGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRI 67
>O51578:EX5B_BORBU Exodeoxyribonuclease V beta chain - Borrelia burgdorferi (Lyme| disease spirochete) Length = 1169 Score = 56.2 bits (134), Expect = 1e-06 Identities = 111/515 (21%), Positives = 208/515 (40%), Gaps = 35/515 (6%) Frame = +3 Query: 1530 ILRHYNEILVSCNALDYHDFI-NSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYF 1706 I + + + S N +D + I N L ++ ++ + + I++DE QD S +Q Sbjct: 321 IEKELKKTIKSTNTIDQNYIISNLKNYLKSEDKKLLNAIKNRYKIILIDEAQDLSLIQIE 380 Query: 1707 LLKLLASHN-HITIVGDEDQSIFSFNGADVSGFD-SFRRDFPNHKEIRLNKNYRSTRAIV 1880 + K+L + + + D Q I+SF AD+S ++ + I L N+RS++ ++ Sbjct: 381 IFKILKTAGIKLIFIADPKQIIYSFRKADISFYNKEIKNKINTDARIVLKINHRSSKKLI 440 Query: 1881 EAATALIRNNTNRCHHKLVETDNPSGSKITVKECHSEDSQCAFVIDKI-IETTSSSAEGR 2057 + N N +E + + S K +++ I+ I I TT++ +E Sbjct: 441 GPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDNNKIVINGQEIEGINIITTNTESEED 500 Query: 2058 DFGKIAVLYRRQITGKAFQVSFRNRKIPFNVHGVAFYRKKVIKAIMAILRTTLPGCDDGP 2237 + K A+ + + + + R I V K I I L+ Sbjct: 501 IYQKTALTIKYLLAYGKIAENNKIRNIKMQDIKVLCRGKNEINLIDKALK---------- 550 Query: 2238 WRQALKILLPGDKEEKKKIIDHVEKI--SLARKCSFISAATDIFSAK---VSGTFKRAQI 2402 ++ ++ +K K K + I L RK SF I S+K V +R I Sbjct: 551 -KEQIQTNKTQEKFLKTKEFSEIFYIIKCLDRKQSF-KTLNYILSSKILNVPWNLQRILI 608 Query: 2403 TQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDNDI 2582 Q + L + + V E++ +I++ + ++ L K A I D + N I Sbjct: 609 KQDKICLIEEFIENIIVLLEKNEITLINAINKITFEKNLWIKIANITKDQKIIEWAKNKI 668 Query: 2583 RSVLQFLMDDVSDFLSTHFSSSGGASQTEEK-----GCTATLKAFIDYISLRETENFRSR 2747 + + + L T+ ++ S+ K +TL++ I E E + Sbjct: 669 NYKGLLIKEGKLENLKTYETTLEIISKIYHKEQNIQSLISTLESLIINEEPEEIEEKINN 728 Query: 2748 KEENKNSITLTTIHQSKGLEWDVVFIVQV----NDSEIPLLHEY-----NGTVKEAGCTL 2900 + SI L TIH+SKGL ++VF++ N + +++ +G ++ L Sbjct: 729 INNDNESIELMTIHKSKGLGMNIVFLLNTTPIENSNFFSKKNQFYKFYQDGKIEYDFFKL 788 Query: 2901 E------------EERRLFYVAMTRARKKLYILHV 2969 E EE+ +FYV TRA+ L+I+ + Sbjct: 789 EENKKYARLKILSEEKNIFYVGATRAKFALFIIKI 823
>Q89AB3:EX5B_BUCBP Exodeoxyribonuclease V beta chain - Buchnera aphidicola subsp.| Baizongia pistaciae Length = 1180 Score = 55.5 bits (132), Expect = 2e-06 Identities = 36/127 (28%), Positives = 68/127 (53%), Gaps = 2/127 (1%) Frame = +3 Query: 1542 YNEILVSC-NALDYHDFINSSITLLTKFPEVYKECQTTCQAIVVDEFQDTSAMQYFLLK- 1715 Y++++ C N ++ ++F N S T+L K+P ++DEFQDT+ QY + K Sbjct: 352 YDDLITFCWNMVNKNNF-NISQTILKKYP-----------VALIDEFQDTNNKQYNIFKK 399 Query: 1716 LLASHNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKEIRLNKNYRSTRAIVEAATA 1895 + N + ++ D Q+I+SF+GAD++ + + + N + L+ N+RS+ I+ + Sbjct: 400 IYKKENLLILISDPKQAIYSFSGADITSYLQAKSNIKN--QYFLDTNWRSSPKIINSINL 457 Query: 1896 LIRNNTN 1916 L N Sbjct: 458 LFSRLKN 464 Score = 33.5 bits (75), Expect = 7.3 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 26/129 (20%) Frame = +3 Query: 2667 EEKGCTATLK-AFIDYISLRETENFRSRKE-------ENKNSITLTTIHQSKGLEWDVVF 2822 EEK T K I+++ T++F K E N I + +IH+SKGLE+ + Sbjct: 693 EEKSITIKNKFLLINWLKKNITQDFYLTKPKYIKPNYEKNNYIKIVSIHKSKGLEYPITI 752 Query: 2823 I------------------VQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMTRARK 2948 I +N+++I + T+K E+ RL YVA+TR+ Sbjct: 753 IPFATITFNKTVSTVEKICFNLNNTKI----KKQKTLKIEKHKFSEDIRLLYVALTRS-- 806 Query: 2949 KLYILHVTI 2975 I+H +I Sbjct: 807 ---IIHCSI 812
>P96920:EX5B_MYCTU Exodeoxyribonuclease V beta chain - Mycobacterium tuberculosis| Length = 1094 Score = 54.3 bits (129), Expect = 4e-06 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 14/123 (11%) Frame = +3 Query: 1662 IVVDEFQDTSAMQYFLL-KLLASHNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKE 1838 ++VDEFQDT MQ+ +L + + H+ + ++GD Q+I+ F G D+ + + Sbjct: 259 VLVDEFQDTDPMQWRVLERAFSRHSALILIGDPKQAIYGFRGGDIHTY--LKAAGTADAR 316 Query: 1839 IRLNKNYRSTRAIVEAATALIRNNT-------------NRCHHKLVETDNPSGSKITVKE 1979 L N+RS RA+VE+ ++R+ T + H+L P+ ++ V + Sbjct: 317 YTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHRLASAPRPAPFRLRVVK 376 Query: 1980 CHS 1988 H+ Sbjct: 377 RHT 379 Score = 33.5 bits (75), Expect = 7.3 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +3 Query: 1044 MIVAGPGSGKTSTMVGRVLTLLKEGISP-SNILAMTFTTAAASEMRDRIGAVVGKAV 1211 ++ A G+GKT + G V L E + +L +TF AA+ E+R+R+ + +AV Sbjct: 18 VLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASRELRERVRGQIVEAV 74
>Q8K9A9:EX5B_BUCAP Exodeoxyribonuclease V beta chain - Buchnera aphidicola subsp.| Schizaphis graminum Length = 1179 Score = 52.8 bits (125), Expect = 1e-05 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Frame = +3 Query: 1665 VVDEFQDTSAMQYFLLKLLASHNH--ITIVGDEDQSIFSFNGADVSGFDSFRRDFPNHKE 1838 ++DEFQDT+ QY + L + + +VGD QSI+SF GAD+ F F Sbjct: 392 LIDEFQDTNIQQYQIFNTLYKNKKTALFLVGDPKQSIYSFRGADI--FSYLHAKFKIKNY 449 Query: 1839 IRLNKNYRSTRAIVEAATALIRNNTNRCHHK 1931 L+ N+RS++ I +A L N N + K Sbjct: 450 YYLDTNWRSSKNICKAINYLFSKNKNPFYFK 480 Score = 35.8 bits (81), Expect = 1.5 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 16/99 (16%) Frame = +3 Query: 2694 KAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVV---FIVQVNDSEIPLLHE 2864 K ++ ++ E E ++ E I + TIH+SKGLE+ +V FIV N S+ HE Sbjct: 722 KKILEKNNISENEYIKNFAESK--IIRIITIHKSKGLEYPIVWIPFIVDFNVSKSYFYHE 779 Query: 2865 Y--------NGTVKEAGCTLEEER-----RLFYVAMTRA 2942 N E +EER R YVA+TR+ Sbjct: 780 KKTLKIFFDNNKSSETLKKSDEERLAEDLRFLYVALTRS 818
>Q9Z7G7:EX5B_CHLPN Exodeoxyribonuclease V beta chain - Chlamydia pneumoniae| (Chlamydophila pneumoniae) Length = 1050 Score = 52.0 bits (123), Expect = 2e-05 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%) Frame = +3 Query: 1656 QAIVVDEFQDTSAMQYFLLKLLASHNHIT----IVGDEDQSIFSFNGADVSGFDSFRRDF 1823 Q +++DEFQDT Q+ + L T ++GD QSI+ + AD+ + + + F Sbjct: 369 QLVLIDEFQDTDKQQWSIFSNLFISPKFTGSLFLIGDPKQSIYEWRSADLPTYLTAKSSF 428 Query: 1824 PNHKEIRLNKNYRSTRAIVEA 1886 K+++L NYRST ++EA Sbjct: 429 SEDKQLQLVNNYRSTPKLMEA 449 Score = 43.5 bits (101), Expect = 0.007 Identities = 28/79 (35%), Positives = 40/79 (50%) Frame = +3 Query: 2724 ETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLE 2903 E E S E+ ++ +TTIH SKGLE+D+VF + S + + Sbjct: 676 EEELAISSYSEDLETLKITTIHSSKGLEYDIVFCPGIEKS-------------KKNKSSS 722 Query: 2904 EERRLFYVAMTRARKKLYI 2960 E R YVA TRA+K+LY+ Sbjct: 723 ELLREMYVACTRAKKQLYL 741
>Q9USU3:FBH1_SCHPO F-box DNA helicase protein 1 - Schizosaccharomyces pombe (Fission| yeast) Length = 878 Score = 50.4 bits (119), Expect = 6e-05 Identities = 32/76 (42%), Positives = 45/76 (59%) Frame = +3 Query: 2748 KEENKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYV 2927 K++ N I L T HQSKGLEWD VQ+ + P + + + L+EE + YV Sbjct: 706 KDDGDNGIILATAHQSKGLEWD---NVQLGNDFRPKFDSVSFSRIGSSRYLQEEINILYV 762 Query: 2928 AMTRARKKLYILHVTI 2975 A+TRA+K+L IL+ TI Sbjct: 763 ALTRAKKRL-ILNDTI 777 Score = 42.7 bits (99), Expect = 0.012 Identities = 31/113 (27%), Positives = 53/113 (46%) Frame = +3 Query: 1611 LTKFPEVYKECQTTCQAIVVDEFQDTSAMQYFLLKLLASHNHITIVGDEDQSIFSFNGAD 1790 L +FP ++ + I+ DE QD + L+ H I IVGD Q I+ F GA+ Sbjct: 469 LYEFPNIFSKYDY----ILFDEAQDFTPCMVDLI-YRQKHARIVIVGDAHQCIYGFRGAN 523 Query: 1791 VSGFDSFRRDFPNHKEIRLNKNYRSTRAIVEAATALIRNNTNRCHHKLVETDN 1949 F+ +P+ K++ L K++R ++ + A L+ K V+ D+ Sbjct: 524 ACAFN--ENLYPSTKQLCLTKSFRFGNSVAKYANFLLSLKGENVKLKGVQNDH 574
>P57529:EX5B_BUCAI Exodeoxyribonuclease V beta chain - Buchnera aphidicola subsp.| Acyrthosiphon pisum (Acyrthosiphon pisum symbiotic bacterium) Length = 1174 Score = 50.4 bits (119), Expect = 6e-05 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Frame = +3 Query: 1659 AIVVDEFQDTSAMQYFLLKLLASHNHITI---VGDEDQSIFSFNGADVSGFDSFRRDFPN 1829 A +DEFQDT QY + LL N T+ +GD Q+I+SF GAD+ F Sbjct: 379 AAFIDEFQDTDIQQYKIFNLLYKKNKTTVLFLIGDPKQAIYSFRGADI--FSYLYAKSKI 436 Query: 1830 HKEIRLNKNYRSTRAIVEAATALIRNNTN 1916 K L+ N+RS+ I ++ L N N Sbjct: 437 KKYYYLDTNWRSSINICKSINFLFSQNIN 465 Score = 33.9 bits (76), Expect = 5.6 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 16/86 (18%) Frame = +3 Query: 2766 SITLTTIHQSKGLEWDVVFI---VQVNDSEIPLLHEY------------NGTVKEAG-CT 2897 SI + TIH+SKGLE+ +V+I + S + + H+ N +K A Sbjct: 734 SIKIITIHKSKGLEYPIVWIPFSIDFKKSTLAIYHDQKSLKTFFDENYSNKFLKIADEER 793 Query: 2898 LEEERRLFYVAMTRARKKLYILHVTI 2975 L E+ R YVA+TR+ ILH +I Sbjct: 794 LAEDIRFLYVALTRS-----ILHCSI 814
>P45157:EX5B_HAEIN Exodeoxyribonuclease V beta chain - Haemophilus influenzae| Length = 1211 Score = 48.9 bits (115), Expect = 2e-04 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 5/83 (6%) Frame = +3 Query: 1665 VVDEFQDTSAMQYFLLKLLASHN-----HITIVGDEDQSIFSFNGADVSGFDSFRRDFPN 1829 ++DEFQDT + QY + + N ++GD Q+I+ F GAD+ F + Sbjct: 415 MIDEFQDTDSQQYAIFSKIYRDNPEKNTGFIMIGDPKQAIYRFRGADI--FTYLKASDEA 472 Query: 1830 HKEIRLNKNYRSTRAIVEAATAL 1898 L KNYRS + +V+ AL Sbjct: 473 QSRFELTKNYRSEKHLVDGVNAL 495 Score = 42.7 bits (99), Expect = 0.012 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 18/133 (13%) Frame = +3 Query: 2610 DVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEENKNSITLTTIH 2789 D++DFL H + + T + A L F I + + R E + + + TIH Sbjct: 711 DLTDFL--HLAEILQQAATLHESEAALLSWFEKQIQGEARQEAQIRLESERQLVKIVTIH 768 Query: 2790 QSKGLEWDVVFI----------------VQVNDSEIPLLHEYNGTVKEAGC--TLEEERR 2915 +SKGLE+D+V++ + + L + A C T EE R Sbjct: 769 KSKGLEYDLVWLPFLAAPSKDPSKKYINIYYSKERDETLWDIENRNLNALCEETFAEELR 828 Query: 2916 LFYVAMTRARKKL 2954 L YVA+TRA+ ++ Sbjct: 829 LLYVALTRAKYQM 841
>P08394:EX5B_ECOLI Exodeoxyribonuclease V beta chain - Escherichia coli| Length = 1180 Score = 48.1 bits (113), Expect = 3e-04 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Frame = +3 Query: 1644 QTTCQAIVVDEFQDTSAMQYFLLKLLASHNHIT---IVGDEDQSIFSFNGADVSGFDSFR 1814 +T ++DEFQDT QY + + + H T ++GD Q+I++F GAD+ + R Sbjct: 375 RTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKAR 434 Query: 1815 RDFPNHKEIRLNKNYRSTRAIVEAATAL 1898 + H L+ N+RS +V + L Sbjct: 435 SEV--HAHYTLDTNWRSAPGMVNSVNKL 460 Score = 35.0 bits (79), Expect = 2.5 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 17/83 (20%) Frame = +3 Query: 2745 RKEENKNSITLTTIHQSKGLEWDVV---FIVQVNDSEIPLLHEYNG-------------- 2873 R E +K+ + + TIH+SKGLE+ +V FI E H+ + Sbjct: 728 RLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESV 787 Query: 2874 TVKEAGCTLEEERRLFYVAMTRA 2942 + EA L E+ RL YVA+TR+ Sbjct: 788 DLAEAE-RLAEDLRLLYVALTRS 809
>Q980U8:FEN_SULSO Flap structure-specific endonuclease - Sulfolobus solfataricus| Length = 349 Score = 37.7 bits (86), Expect = 0.38 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 9/116 (7%) Frame = +3 Query: 1320 QQRRAIVEAERLLEHGKSDGLGDAVKQCDGDI---KNSFKDKAKKWLKF----VTQAKSS 1478 ++R+A EAER LE KS+G + +++ I N +++KK L+ + QA S Sbjct: 93 RRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSE 152 Query: 1479 GQTPEEYEKKGDLTGASILRHYNEILVSCNALDYHDFINSSITLLTKFP--EVYKE 1640 G+ Y K L+ A+ + Y+ IL L N +IT K P +VY E Sbjct: 153 GEAEAAYLNKLGLSWAAASQDYDAILFGAKRL----VRNLTITGKRKLPNKDVYVE 204
>Q7T6X1:YR610_MIMIV Uncharacterized protein R610 - Mimivirus| Length = 332 Score = 37.4 bits (85), Expect = 0.50 Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Frame = -3 Query: 444 RPALDPPSNLSPCPYPSRPWTASAPRRWRPPQARTPRPCRRP-PEATRKTWA------PW 286 RP PPS P P P P P RPP R P P RP P+ R W+ PW Sbjct: 197 RPHPRPPSPRPPSPRPPHP----RPPSPRPPHPRPPSPRPRPRPQPDRNWWSNRPRPHPW 252 Query: 285 G 283 G Sbjct: 253 G 253
>Q0U4Z8:VPS27_PHANO Vacuolar protein sorting-associated protein 27 - Phaeosphaeria| nodorum (Septoria nodorum) Length = 720 Score = 37.0 bits (84), Expect = 0.66 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Frame = -3 Query: 453 PLQRPALDPPSNLSPCPYPSRPWTASAPRRWRPPQARTPRP----CRRPPEATRKTWAP 289 P Q+ L PP+ +P YPS+ TA P++ PPQ P P ++P + + W P Sbjct: 627 PPQQTPLSPPAYQNPS-YPSQQQTAPPPQQQAPPQQAPPPPQQQQWQQPAQTQTQAWQP 684
>Q96JM3:K1802_HUMAN Zinc finger protein KIAA1802 - Homo sapiens (Human)| Length = 812 Score = 36.2 bits (82), Expect = 1.1 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 405 PYPSRPWTASAPRRWRPPQARTPRPCRRPPEATRKTWAP 289 P P RP A +P W+P +PRP + P A+ W P Sbjct: 298 PEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSASSGPWKP 336 Score = 35.4 bits (80), Expect = 1.9 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = -3 Query: 441 PALDPPSNLSP---CPYPSRPWTASAPRRWRPPQARTPRPCRRPPEATRKTWAP 289 PA P S S P P +P + +P W+P A +P P R P + +W P Sbjct: 261 PAASPESRKSARTTSPEPRKPSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWKP 314
>Q6Q1S3:R1AB_CVHNL Replicase polyprotein 1ab - Human coronavirus NL63 (HCoV-NL63)| Length = 6729 Score = 27.3 bits (59), Expect(2) = 1.4 Identities = 18/65 (27%), Positives = 31/65 (47%) Frame = +1 Query: 1897 LFATTLTGVIINLLRQTTLLEVRSLLRSAIVKIHNVRLSLTKSLKLHLVQLKVATLVKLL 2076 LFATT+ G L + ++ L+ +A + L K + H V+L T+ +LL Sbjct: 4354 LFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNKDVNTHSVRL---TITELL 4410 Query: 2077 SYIED 2091 ++ D Sbjct: 4411 QFVTD 4415 Score = 26.9 bits (58), Expect(2) = 1.4 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 1782 GADVSGFDSFRRDFPNHKEIRLNKNYR 1862 G+D FD + DF HKE NK ++ Sbjct: 4300 GSDFKTFDLLKYDFTEHKENLFNKYFK 4326
>Q5UR49:YR568_MIMIV Putative ATP-dependent DNA helicase R568 - Mimivirus| Length = 695 Score = 35.8 bits (81), Expect = 1.5 Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 1/48 (2%) Frame = +3 Query: 1047 IVAGPGSGKTSTMVGRVLTLLKEGISPSN-ILAMTFTTAAASEMRDRI 1187 ++A GSGKT +++GR+ +++ G++ + I A+TF+ AA++ RI Sbjct: 105 LIACAGSGKTRSVIGRIKFMVEHGLADKDEIYAITFSKHAATDFHRRI 152 Score = 33.5 bits (75), Expect = 7.3 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +3 Query: 2769 ITLTTIHQSKGLEWDVVFIVQVNDSEI---PLLHEYNGTVKEAGCTLEEERRLFYVAMTR 2939 I L T H +KGLE+D VF++ S + P E+N + L YVA +R Sbjct: 399 INLLTYHGTKGLEFDTVFVMDFYHSLLNIEPTYEEHN-----------INQYLLYVATSR 447 Query: 2940 ARKKLYI 2960 A K++I Sbjct: 448 AISKMFI 454
>P33485:VNUA_PRVKA Probable nuclear antigen - Pseudorabies virus (strain Kaplan) (PRV)| Length = 1733 Score = 35.8 bits (81), Expect = 1.5 Identities = 20/48 (41%), Positives = 22/48 (45%) Frame = -3 Query: 432 DPPSNLSPCPYPSRPWTASAPRRWRPPQARTPRPCRRPPEATRKTWAP 289 DPP P P P RP T+S+ PP R P P R PP W P Sbjct: 176 DPPGGGPPSP-PPRPSTSSSSSHQGPPSTRPPPPQRPPPR-----WPP 217
>Q09442:SF3B4_CAEEL Splicing factor 3B subunit 4 - Caenorhabditis elegans| Length = 388 Score = 30.0 bits (66), Expect(2) = 1.8 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 1/80 (1%) Frame = -3 Query: 543 AEHHTPQRCHMPPSRMHHQAFRTLVRRGLLPLQRPALDPPSNLSPCPYPSRPWTASAPRR 364 A H T + + PP M + + G P PP +++P P P P PR Sbjct: 234 AAHATGRPGYQPPPLMG------MAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRP 287 Query: 363 WRPPQA-RTPRPCRRPPEAT 307 PP + P P PP T Sbjct: 288 PPPPSSGMWPPPPPPPPGRT 307 Score = 24.3 bits (51), Expect(2) = 1.8 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 14/40 (35%) Frame = -2 Query: 307 PQDLGPLGRGVM---------YPWSMPSTPP-----AGPG 230 P GP G G M YP MP PP AGPG Sbjct: 322 PSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPG 361
>Q2PC93:SSPO_CHICK SCO-spondin precursor - Gallus gallus (Chicken)| Length = 5255 Score = 35.4 bits (80), Expect = 1.9 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = -3 Query: 411 PCPYPSRPW------TASAPRRWRPPQARTPRPCRRPPEATRKTWAPWGGE*CT 268 PCP+P P T R R QA RPC P E + W+ WGG C+ Sbjct: 4350 PCPFPGPPGAVCNASTGDGARPHREVQACYLRPC--PAECSWSAWSSWGGCSCS 4401
>Q7TMP6:FA70A_RAT Protein FAM70A - Rattus norvegicus (Rat)| Length = 351 Score = 35.4 bits (80), Expect = 1.9 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = -3 Query: 516 HMPPSRMHHQAFRTLVRRGLLPLQRPA--LDPPSNLSPCPYPSRPWTASAPRRWRPPQAR 343 H PP + A+ G+ P P+ D SP P PS W++SAP R+ PP Sbjct: 283 HSPPHLPPYSAY-DFQHSGVFPSSPPSGLSDEQEPQSPSPSPSYMWSSSAPPRYSPPYY- 340 Query: 342 TPRPCRRPP 316 P +PP Sbjct: 341 --PPFEKPP 347
>Q8BHW5:FA70A_MOUSE Protein FAM70A - Mus musculus (Mouse)| Length = 351 Score = 35.4 bits (80), Expect = 1.9 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = -3 Query: 516 HMPPSRMHHQAFRTLVRRGLLPLQRPA--LDPPSNLSPCPYPSRPWTASAPRRWRPPQAR 343 H PP + A+ G+ P P+ D SP P PS W++SAP R+ PP Sbjct: 283 HSPPHLPPYSAY-DFQHSGVFPSSPPSGLSDEQEPQSPSPSPSYMWSSSAPPRYSPPYY- 340 Query: 342 TPRPCRRPP 316 P +PP Sbjct: 341 --PPFEKPP 347
>Q8BH93:CN032_MOUSE Uncharacterized protein C14orf32 homolog - Mus musculus (Mouse)| Length = 242 Score = 30.0 bits (66), Expect(2) = 2.4 Identities = 17/58 (29%), Positives = 24/58 (41%) Frame = -3 Query: 456 LPLQRPALDPPSNLSPCPYPSRPWTASAPRRWRPPQARTPRPCRRPPEATRKTWAPWG 283 LP Q A P + + S+ W S+P W P A P PP + + P+G Sbjct: 11 LPEQSSAKPPAVTNTKAGHSSQGWPGSSP--WSNPSAPPAMPSGLPPSSAAPSTVPFG 66 Score = 23.9 bits (50), Expect(2) = 2.4 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -2 Query: 295 GPLGRGVMYPWSMPSTPPAGP 233 GP+ G MYP P+ PP GP Sbjct: 66 GPVPTG-MYPSMPPTGPPPGP 85
>P69514:RDRP_CGMVS RNA-directed RNA polymerase - Cucumber green mottle mosaic virus| (strain watermelon SH) (CGMMV) Length = 1648 Score = 34.7 bits (78), Expect = 3.3 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Frame = +3 Query: 957 CAPRKYYEYLHSLNDKQREASCSDVAVPLMIVAG-PGSGKTSTMVGRVLTLLKEGISPSN 1133 C+ K Y + SL +EA D V + +V G PG GKT+ ++ RV + Sbjct: 831 CSETKVYSVIRSLEVLNKEAIV-DPGVHITLVDGVPGCGKTAEIIARV--------NWKT 881 Query: 1134 ILAMTFTTAAASEMRDRIGAVVGKAVAKEIIISTFHSFCL 1253 L +T AA+ +R R A+ VA + TF SF + Sbjct: 882 DLVLTPGREAAAMIRRRACALHKSPVATNDNVRTFDSFVM 921
>Q8NFZ0:FBX18_HUMAN F-box only protein 18 - Homo sapiens (Human)| Length = 1043 Score = 34.7 bits (78), Expect = 3.3 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Frame = +3 Query: 2775 LTTIHQSKGLEWDVVFI------VQVNDSEIPLLHEYNGTVKEAGCTLEEERRLFYVAMT 2936 L T+H++KGLE+D V + V +P L + E+E L YVA+T Sbjct: 869 LGTVHKAKGLEFDTVHVLDDFVKVPCARHNLPQLPHFR-----VESFSEDEWNLLYVAVT 923 Query: 2937 RARKKL 2954 RA+K+L Sbjct: 924 RAKKRL 929
>Q8K327:K1802_MOUSE Zinc finger protein KIAA1802 - Mus musculus (Mouse)| Length = 802 Score = 34.3 bits (77), Expect = 4.3 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -3 Query: 399 PSRPWTASAPRRWRPPQARTPRPCRRPPEATRKTW 295 P RP A +P W+P +PRP + P AT W Sbjct: 290 PRRPTPAVSPGSWKPGPPGSPRPWKSSPSATSGPW 324
>Q8K2I9:FBX18_MOUSE F-box only protein 18 - Mus musculus (Mouse)| Length = 1042 Score = 34.3 bits (77), Expect = 4.3 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Frame = +3 Query: 2775 LTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKE--AGCTLEEERRLFYVAMTRARK 2948 L T+H++KGLE+D V ++ + ++P + E+E L YVA+TRA+K Sbjct: 868 LGTVHKAKGLEFDTVHVLD-DFVKVPCARHNLAQLPHFRVESFSEDEWNLLYVAVTRAKK 926 Query: 2949 KL 2954 +L Sbjct: 927 RL 928
>Q9Y6H1:CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain-containing protein 2 -| Homo sapiens (Human) Length = 151 Score = 34.3 bits (77), Expect = 4.3 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Frame = +1 Query: 187 PASRSPMLRSTPCSSP--DPQAAWRASTTGTSLPSPRGPSL 303 PASR+P +R+ P +P P AA S G+S +PR P L Sbjct: 15 PASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGL 55
>P0C207:REX_HTL1F Protein Rex - Human T-cell leukemia virus 1 (isolate Zaire EL| subtype B) (HTLV-1) Length = 189 Score = 33.9 bits (76), Expect = 5.6 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 4/79 (5%) Frame = -3 Query: 507 PSRMHHQAFRTLVRRGLLPLQRPALDPPSNLSPCPYPSRPWTASAPRR---WRPPQARTP 337 P R + R+L RR P+Q P PPS SRP + P W PP T Sbjct: 98 PPREPLRPSRSLPRRP--PIQPPTFHPPS--------SRPCANTPPSETDTWNPPLGSTS 147 Query: 336 RPCR-RPPEATRKTWAPWG 283 +PC + P + KT P G Sbjct: 148 QPCLFQTPASGPKTCTPSG 166
>P0C206:REX_HTL1C Protein Rex - Human T-cell leukemia virus 1 (isolate Caribbea HS-35| subtype A) (HTLV-1) Length = 189 Score = 33.9 bits (76), Expect = 5.6 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Frame = -3 Query: 507 PSRMHHQAFRTLVRRGLLPLQRPALDPPSNLSPCPYPSRPWTASAPRR---WRPPQARTP 337 P R + R+L R+ L+ Q P PPS SRP + P W PP T Sbjct: 98 PPREPLRPLRSLPRQSLI--QPPTFHPPS--------SRPCANTPPSEMDTWNPPLGSTS 147 Query: 336 RPCR-RPPEATRKTWAPWG 283 +PC + P++ KT P G Sbjct: 148 QPCLFQTPDSGPKTCTPSG 166
>Q6BPA9:NUF2_DEBHA Probable kinetochore protein NUF2 - Debaryomyces hansenii (Yeast)| (Torulaspora hansenii) Length = 488 Score = 33.9 bits (76), Expect = 5.6 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Frame = +3 Query: 2412 RKVLSTLYSLSKFVEREQSVSA---IISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDNDI 2582 R++LS + + ++F E E SV + S GN LE+ V+ N+ +L N+ ND+ Sbjct: 158 RRILSAVVNYARFRE-ENSVECEKLVSISEGN-------LEQLKVVQNENSRLSNKINDL 209 Query: 2583 RSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEENK 2762 + ++ A++T+E ATLK Y S E E K+ K Sbjct: 210 KYKIE-------------------ANETDEGNKKATLKQITTYNSKLENE----LKKLKK 246 Query: 2763 NSITLTTIH 2789 N LT H Sbjct: 247 NQEILTLEH 255
>Q9KDD7:GREA_BACHD Transcription elongation factor greA - Bacillus halodurans| Length = 158 Score = 33.9 bits (76), Expect = 5.6 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Frame = +3 Query: 2274 KEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRAQITQGRKVLSTLYSLSKFV 2453 K E++K + VE+I +AR +S ++ SAK F +I+Q K++ ++ + Sbjct: 25 KTERRKEV--VERIKIARSFGDLSENSEYDSAKEEQAFVEGRISQIEKMIRN----AEII 78 Query: 2454 EREQSVSAIISSAGNM----LP----QQYLLEKRAVIDNDGGKLLNEDNDIRSVLQFLMD 2609 E + + ++S + +P ++Y + A D GK+ N+ +S+L +D Sbjct: 79 EESEGDANVVSLGKTVKFVEIPDGEEEEYTIVGSAESDPFEGKISNDSPMAQSLLGHTID 138 Query: 2610 DV 2615 DV Sbjct: 139 DV 140
>P39057:DYHC_ANTCR Dynein beta chain, ciliary - Anthocidaris crassispina (Sea urchin)| Length = 4466 Score = 33.9 bits (76), Expect = 5.6 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Frame = +3 Query: 3249 FHHWAKKQAFQIPKRLLDKIKFVIDERLRG----KGYKRKDVLCKLKSLLSDDEALGYAE 3416 FH W ++ + KR LD+++ + + Y V K L+++ Y Sbjct: 2961 FHEWPQEALVSVSKRFLDEVELLKGDIKNSIAEFMAYVHVSVNESSKQYLTNERRYNYTT 3020 Query: 3417 YVIKWEQIPIDKRSHLMRERQEHFQKQRIENSMGSSEPTPKQISYLRS 3560 EQI + + M+ ++ + +R+EN + + T +Q+ L++ Sbjct: 3021 PKSFLEQIKLYESLLAMKSKELTAKMERLENGLTKLQSTAQQVDDLKA 3068
>Q9UWW6:VATA_SULSO V-type ATP synthase alpha chain - Sulfolobus solfataricus| Length = 592 Score = 33.5 bits (75), Expect = 7.3 Identities = 31/103 (30%), Positives = 50/103 (48%) Frame = +3 Query: 2241 RQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRAQITQGRKV 2420 RQ ++++ P EK K+I +E L ++ A D A S K+A+I + + Sbjct: 472 RQIVRLVGPESLAEKDKLI--LETARLIKEAFLKQNAYDDIDA-FSSPQKQARIMRLIYL 528 Query: 2421 LSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDND 2549 +T SK VER I+ S G +LP+ ++ +A I ND Sbjct: 529 FNTY--ASKLVERGIPTKKIVDSMGQLLPE--IIRSKAAIKND 567
>P45158:EX5A_HAEIN Exodeoxyribonuclease V alpha chain - Haemophilus influenzae| Length = 640 Score = 33.5 bits (75), Expect = 7.3 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +3 Query: 969 KYYEYLHSLNDKQREASCSDVAVPLMIVAG-PGSGKTSTMVGRVLTLLKEGISPSNILAM 1145 KY+ D Q+ A + + P I+ G PG+GKT+T+ +L L + +I + Sbjct: 165 KYFPEKQEKTDWQKVAVATAIKSPFSIITGGPGTGKTTTVTRLLLVLQELFDCKLHIKLV 224 Query: 1146 TFTTAAASEMRDRIGAVVG 1202 T AAS + + I +G Sbjct: 225 APTGKAASRLEESIKNALG 243
>Q7T1K4:ANDR_RANCA Androgen receptor - Rana catesbeiana (Bull frog)| Length = 777 Score = 33.5 bits (75), Expect = 7.3 Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 11/85 (12%) Frame = -3 Query: 510 PPSRMHHQAFRTL---VRRGLLPLQRPA--LDPPSNLSPCPYPS------RPWTASAPRR 364 PP +M AF L VR L +R A LD S +S C +P WT Sbjct: 14 PPGKMIRGAFENLFLSVREALQGERRSAASLDTSSPISACVHPHPTWNEPSTWTEVRGTP 73 Query: 363 WRPPQARTPRPCRRPPEATRKTWAP 289 WR PQ P PP + ++ AP Sbjct: 74 WREPQGAQP----DPPPCSPRSQAP 94
>P0C205:REX_HTL1A Protein Rex - Human T-cell leukemia virus 1 (strain Japan ATK-1| subtype A) (HTLV-1) Length = 189 Score = 33.1 bits (74), Expect = 9.5 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Frame = -3 Query: 507 PSRMHHQAFRTLVRRGLLPLQRPALDPPSNLSPCPYPSRPWTASAPRR---WRPPQARTP 337 P R + R+L R+ L+ Q P PPS SRP + P W PP T Sbjct: 98 PPREPLRPSRSLPRQSLI--QPPTFHPPS--------SRPCANTPPSEMDTWNPPLGSTS 147 Query: 336 RPCR-RPPEATRKTWAPWG 283 +PC + P++ KT P G Sbjct: 148 QPCLFQTPDSGPKTCTPSG 166
>Q7NH85:IF2_GLOVI Translation initiation factor IF-2 - Gloeobacter violaceus| Length = 925 Score = 33.1 bits (74), Expect = 9.5 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Frame = -3 Query: 453 PLQRPALDPPSNLSPC--PYPSRPWTASAPR----RWRPPQARTPRPCRRPPEATRKTWA 292 PL PA + P + P P P++P A AP +P + R P+P +PP K Sbjct: 206 PLPAPAAEAPQPVRPPAPPAPAKPTPAPAPAPRPTAEQPSEPRRPQPPAQPPSRPEKRGG 265 Query: 291 P 289 P Sbjct: 266 P 266
>P17990:HOG1_HORVU Gamma-hordein-1 precursor - Hordeum vulgare (Barley)| Length = 305 Score = 33.1 bits (74), Expect = 9.5 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 7/84 (8%) Frame = -3 Query: 549 QQAEHHTPQRCHMPPSRMHHQAFRTLVRRGLLPLQRPALDPPSNLSPCP----YPSRPWT 382 QQ + Q+C P Q + +R LLP P L P L P P +P P + Sbjct: 64 QQPFPQSQQQCLQQPQHQFPQPTQQFPQRPLLPFTHPFLTFPDQLLPQPPHQSFPQPPQS 123 Query: 381 ASAPRRW---RPPQARTPRPCRRP 319 P +PPQ + P ++P Sbjct: 124 YPQPPLQPFPQPPQQKYPEQPQQP 147
>P03341:GAG_BAEVM Gag polyprotein [Contains: Inner coat protein p12; Core protein| p15; Core shell protein p30; Nucleoprotein p10] - Baboon endogenous virus (strain M7) Length = 537 Score = 33.1 bits (74), Expect = 9.5 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Frame = -3 Query: 453 PLQRPALDPPSNLSPCP---YPSRPWTASAPRRWRPPQARTPRPCRRPPEATRKT 298 P P L+PP SP P P P T SAP + TP PPE T +T Sbjct: 146 PPHNPLLEPPPYNSPSPPVLSPVSPTTPSAPTPSSLVSSSTPPSSPAPPELTPRT 200
>Q9Z0U4:GABR1_RAT Gamma-aminobutyric acid type B receptor, subunit 1 precursor - Rattus| norvegicus (Rat) Length = 991 Score = 33.1 bits (74), Expect = 9.5 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = -2 Query: 1201 PTTAPIRSLISEAAAVVNVIARMFDGEIPSFSNVRTLPTIVEVFPLPGPATIINGTATSL 1022 P + + +L++EAA + N+I + P+ SN + PT P AT+ N T L Sbjct: 243 PGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFFRTHP---SATLHNPTRVKL 299 Query: 1021 HE 1016 E Sbjct: 300 FE 301
>Q9WV18:GABR1_MOUSE Gamma-aminobutyric acid type B receptor, subunit 1 precursor - Mus| musculus (Mouse) Length = 960 Score = 33.1 bits (74), Expect = 9.5 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = -2 Query: 1201 PTTAPIRSLISEAAAVVNVIARMFDGEIPSFSNVRTLPTIVEVFPLPGPATIINGTATSL 1022 P + + +L++EAA + N+I + P+ SN + PT P AT+ N T L Sbjct: 243 PGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFFRTHP---SATLHNPTRVKL 299 Query: 1021 HE 1016 E Sbjct: 300 FE 301
>Q9UBS5:GABR1_HUMAN Gamma-aminobutyric acid type B receptor, subunit 1 precursor - Homo| sapiens (Human) Length = 961 Score = 33.1 bits (74), Expect = 9.5 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = -2 Query: 1201 PTTAPIRSLISEAAAVVNVIARMFDGEIPSFSNVRTLPTIVEVFPLPGPATIINGTATSL 1022 P + + +L++EAA + N+I + P+ SN + PT P AT+ N T L Sbjct: 244 PGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFFRTHP---SATLHNPTRVKL 300 Query: 1021 HE 1016 E Sbjct: 301 FE 302
>Q5JRV8:FA70A_HUMAN Protein FAM70A - Homo sapiens (Human)| Length = 349 Score = 33.1 bits (74), Expect = 9.5 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = -3 Query: 516 HMPPSRMHHQAFRTLVRRGLLPLQRPA--LDPPSNLSPCPYPSRPWTASAPRRWRPPQAR 343 H PP + A+ G+ P P+ D P + SP P S W++SAP R+ PP Sbjct: 283 HSPPHLPPYSAY-DFQHSGVFPSSPPSGLSDEPQSASPSP--SYMWSSSAPPRYSPPYY- 338 Query: 342 TPRPCRRPP 316 P +PP Sbjct: 339 --PPFEKPP 345
>Q9WTY1:PDCD7_MOUSE Programmed cell death protein 7 - Mus musculus (Mouse)| Length = 482 Score = 30.0 bits (66), Expect(2) = 10.0 Identities = 22/50 (44%), Positives = 25/50 (50%) Frame = -3 Query: 453 PLQRPALDPPSNLSPCPYPSRPWTASAPRRWRPPQARTPRPCRRPPEATR 304 PL PA PP P P+P ASAP +PP A P R P EA+R Sbjct: 31 PLPSPAFPPPLPQRPGPFPG----ASAP-FLQPPLALQP---RAPAEASR 72 Score = 21.6 bits (44), Expect(2) = 10.0 Identities = 8/20 (40%), Positives = 9/20 (45%) Frame = -2 Query: 286 GRGVMYPWSMPSTPPAGPGC 227 G G +P P PP P C Sbjct: 76 GGGAFFPVPPPPLPPPPPQC 95 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 691,120,206 Number of extensions: 15417951 Number of successful extensions: 46876 Number of sequences better than 10.0: 86 Number of HSP's gapped: 46355 Number of HSP's successfully gapped: 135 Length of query: 1318 Length of database: 100,686,439 Length adjustment: 125 Effective length of query: 1193 Effective length of database: 66,399,564 Effective search space: 79214679852 Effective search space used: 79214679852 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
