ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf18f19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001061880.1| Oryza sativa (japonica cultivar-group) Os05g... 54 0.002
2gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome... 54 0.002
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 54 0.002
4dbj|AK110893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 0.002
5ref|NM_001050899.1| Oryza sativa (japonica cultivar-group) Os01g... 48 0.11
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.11
7dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 48 0.11
8dbj|AK119989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.11
9ref|NM_001061882.1| Oryza sativa (japonica cultivar-group) Os05g... 46 0.43
10dbj|AK102233.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.43
11emb|AL691461.22| Mouse DNA sequence from clone RP23-162E10 on ch... 46 0.43
12emb|AL671964.7| Mouse DNA sequence from clone RP23-198N23 on chr... 46 0.43
13emb|CT832719.1| Oryza sativa (indica cultivar-group) cDNA clone:... 44 1.7
14ref|NM_001066379.1| Oryza sativa (japonica cultivar-group) Os07g... 44 1.7
15emb|AM286690.1| Alcanivorax borkumensis SK2, complete genome 44 1.7
16ref|XM_001057100.1| PREDICTED: Rattus norvegicus storkhead box 1... 44 1.7
17ref|XM_228160.4| PREDICTED: Rattus norvegicus storkhead box 1 (p... 44 1.7
18ref|XM_635705.1| Dictyostelium discoideum AX4 hypothetical prote... 44 1.7
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 1.7
20emb|CR769766.10| Zebrafish DNA sequence from clone DKEY-207J12 i... 44 1.7
21dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic D... 44 1.7
22dbj|AK069279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 1.7
23ref|XM_001107158.1| PREDICTED: Macaca mulatta similar to ring fi... 42 6.8
24ref|XM_001107031.1| PREDICTED: Macaca mulatta similar to ring fi... 42 6.8
25emb|CT574570.2| Pan troglodytes chromosome X clone CH251-19I14 m... 42 6.8
26gb|AC139751.2| Mus musculus BAC clone RP24-403E24 from chromosom... 42 6.8
27gb|AC170423.1| Rhesus Macaque BAC CH250-107D17 (Children's Hosp... 42 6.8
28gb|AC101672.11| Mus musculus chromosome 5, clone RP23-115F16, co... 42 6.8
29gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 42 6.8
30gb|AC148465.2| Xenopus tropicalis clone CH216-65A19, complete se... 42 6.8
31gb|AC146540.2| Gasterosteus aculeatus clone CH213-16D10, complet... 42 6.8
32gb|AC122445.3| Mus musculus BAC clone RP24-233P3 from chromosome... 42 6.8
33gb|AC122524.3| Mus musculus BAC clone RP24-494L9 from chromosome... 42 6.8
34dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 42 6.8
35gb|CP000249.1| Frankia sp. CcI3, complete genome 42 6.8
36dbj|AK141685.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 42 6.8
37dbj|AK081084.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 42 6.8
38gb|AC019188.6| Homo sapiens BAC clone RP11-309H6 from 4, complet... 42 6.8
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 6.8
40emb|AL109913.20|HSA183K14 Human DNA sequence from clone RP11-183... 42 6.8
41gb|AC008875.9| Homo sapiens chromosome 5 clone CTD-2201E18, comp... 42 6.8
42gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 6.8
43emb|BX883048.1| Rattus norvegicus chromosome 20, major histocomp... 42 6.8
44emb|BX842647.1| Bdellovibrio bacteriovorus complete genome, stra... 42 6.8
45emb|CR759788.7| Zebrafish DNA sequence from clone CH211-153F13, ... 42 6.8
46emb|AL645747.11| Mouse DNA sequence from clone RP23-436D9 on chr... 42 6.8
47gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A... 42 6.8
48dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic D... 42 6.8
49dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic D... 42 6.8
50dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic D... 42 6.8
51dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic D... 42 6.8
52gb|AC174778.2| Mus musculus BAC clone RP23-185A7 from chromosome... 42 6.8
53emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, ... 42 6.8
54emb|CT010496.14| Mouse DNA sequence from clone RP23-193I7 on chr... 42 6.8
55emb|CT025659.7| Mouse DNA sequence from clone RP24-86F23 on chro... 42 6.8
56emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chr... 42 6.8
57emb|AL691424.7| Mouse DNA sequence from clone RP23-219K12 on chr... 42 6.8
58gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 42 6.8

>ref|NM_001061880.1| Oryza sativa (japonica cultivar-group) Os05g0369300 (Os05g0369300)
            mRNA, complete cds
          Length = 1836
 Score = 54.0 bits (27), Expect = 0.002
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 1104 agcctgaggtatctgttcctgctcaacaattccta 1138
            ||||||||||| ||||||||||| |||||||||||
Sbjct: 1208 agcctgaggtacctgttcctgcttaacaattccta 1242



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>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07,
              complete sequence
          Length = 159932

 Score = 54.0 bits (27), Expect = 0.002
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 1104   agcctgaggtatctgttcctgctcaacaattccta 1138
              ||||||||||| ||||||||||| |||||||||||
Sbjct: 138235 agcctgaggtacctgttcctgcttaacaattccta 138269



 Score = 46.1 bits (23), Expect = 0.43
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 1104   agcctgaggtatctgttcctgctcaacaattccta 1138
              ||||||||||| | ||||||||| |||||||||||
Sbjct: 123645 agcctgaggtaccagttcctgcttaacaattccta 123679



 Score = 46.1 bits (23), Expect = 0.43
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 1104   agcctgaggtatctgttcctgctcaacaattccta 1138
              |||||||| ||||||||| |||| |||||||||||
Sbjct: 152392 agcctgagatatctgttcttgcttaacaattccta 152426



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 54.0 bits (27), Expect = 0.002
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 1104     agcctgaggtatctgttcctgctcaacaattccta 1138
                ||||||||||| ||||||||||| |||||||||||
Sbjct: 17608430 agcctgaggtacctgttcctgcttaacaattccta 17608464



 Score = 46.1 bits (23), Expect = 0.43
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 1104     agcctgaggtatctgttcctgctcaacaattccta 1138
                ||||||||||| | ||||||||| |||||||||||
Sbjct: 17593840 agcctgaggtaccagttcctgcttaacaattccta 17593874



 Score = 46.1 bits (23), Expect = 0.43
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 1104     agcctgaggtatctgttcctgctcaacaattccta 1138
                |||||||| ||||||||| |||| |||||||||||
Sbjct: 17622587 agcctgagatatctgttcttgcttaacaattccta 17622621



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>dbj|AK110893.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A03, full
            insert sequence
          Length = 1836

 Score = 54.0 bits (27), Expect = 0.002
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 1104 agcctgaggtatctgttcctgctcaacaattccta 1138
            ||||||||||| ||||||||||| |||||||||||
Sbjct: 1208 agcctgaggtacctgttcctgcttaacaattccta 1242



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>ref|NM_001050899.1| Oryza sativa (japonica cultivar-group) Os01g0768100 (Os01g0768100)
           mRNA, complete cds
          Length = 799

 Score = 48.1 bits (24), Expect = 0.11
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 356 cgacgggtacacccagcgcatggtccaagcattcga 391
           |||||| ||| ||||||||||||||||||| |||||
Sbjct: 341 cgacggctacgcccagcgcatggtccaagcgttcga 376



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.11
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 356      cgacgggtacacccagcgcatggtccaagcattcga 391
                |||||| ||| ||||||||||||||||||| |||||
Sbjct: 32373500 cgacggctacgcccagcgcatggtccaagcgttcga 32373465



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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1143G03
          Length = 137770

 Score = 48.1 bits (24), Expect = 0.11
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 356   cgacgggtacacccagcgcatggtccaagcattcga 391
             |||||| ||| ||||||||||||||||||| |||||
Sbjct: 52997 cgacggctacgcccagcgcatggtccaagcgttcga 52962



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>dbj|AK119989.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-G04, full
           insert sequence
          Length = 799

 Score = 48.1 bits (24), Expect = 0.11
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 356 cgacgggtacacccagcgcatggtccaagcattcga 391
           |||||| ||| ||||||||||||||||||| |||||
Sbjct: 341 cgacggctacgcccagcgcatggtccaagcgttcga 376



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>ref|NM_001061882.1| Oryza sativa (japonica cultivar-group) Os05g0369700 (Os05g0369700)
            mRNA, complete cds
          Length = 1764

 Score = 46.1 bits (23), Expect = 0.43
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 1104 agcctgaggtatctgttcctgctcaacaattccta 1138
            |||||||| ||||||||| |||| |||||||||||
Sbjct: 1129 agcctgagatatctgttcttgcttaacaattccta 1163



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>dbj|AK102233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088A19, full
            insert sequence
          Length = 1767

 Score = 46.1 bits (23), Expect = 0.43
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 1104 agcctgaggtatctgttcctgctcaacaattccta 1138
            |||||||| ||||||||| |||| |||||||||||
Sbjct: 1130 agcctgagatatctgttcttgcttaacaattccta 1164



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>emb|AL691461.22| Mouse DNA sequence from clone RP23-162E10 on chromosome 11, complete
            sequence
          Length = 150034

 Score = 46.1 bits (23), Expect = 0.43
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 1689 gattttattttatttcgtgagtgtatg 1715
            ||||||||||||||| |||||||||||
Sbjct: 1026 gattttattttattttgtgagtgtatg 1000



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>emb|AL671964.7| Mouse DNA sequence from clone RP23-198N23 on chromosome 11, complete
             sequence
          Length = 93281

 Score = 46.1 bits (23), Expect = 0.43
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 1689  gattttattttatttcgtgagtgtatg 1715
             ||||||||||||||| |||||||||||
Sbjct: 92307 gattttattttattttgtgagtgtatg 92281



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>emb|CT832719.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112D19, full
            insert sequence
          Length = 1093

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1045 actctgttgattatctgaaaga 1066
            ||||||||||||||||||||||
Sbjct: 676  actctgttgattatctgaaaga 697



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>ref|NM_001066379.1| Oryza sativa (japonica cultivar-group) Os07g0530100 (Os07g0530100)
            mRNA, complete cds
          Length = 2377

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1045 actctgttgattatctgaaaga 1066
            ||||||||||||||||||||||
Sbjct: 687  actctgttgattatctgaaaga 708



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>emb|AM286690.1| Alcanivorax borkumensis SK2, complete genome
          Length = 3120143

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 84     ggccggcttgccgccgtgccgg 105
              ||||||||||||||||||||||
Sbjct: 627604 ggccggcttgccgccgtgccgg 627625



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>ref|XM_001057100.1| PREDICTED: Rattus norvegicus storkhead box 1 (predicted)
           (Stox1_predicted), mRNA
          Length = 2937

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 119 cggctccccggccgcctgcccg 140
           ||||||||||||||||||||||
Sbjct: 84  cggctccccggccgcctgcccg 63



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>ref|XM_228160.4| PREDICTED: Rattus norvegicus storkhead box 1 (predicted)
           (Stox1_predicted), mRNA
          Length = 2937

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 119 cggctccccggccgcctgcccg 140
           ||||||||||||||||||||||
Sbjct: 84  cggctccccggccgcctgcccg 63



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>ref|XM_635705.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0203990)
            mRNA, complete cds
          Length = 1716

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1287 tgttgttggtgttgttgtatca 1308
            ||||||||||||||||||||||
Sbjct: 78   tgttgttggtgttgttgtatca 57



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 1045     actctgttgattatctgaaaga 1066
                ||||||||||||||||||||||
Sbjct: 20693799 actctgttgattatctgaaaga 20693778



 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 1279    gactgctctgttgttggtgttgttg 1303
               |||||||||||||||| ||||||||
Sbjct: 8776010 gactgctctgttgttgttgttgttg 8775986



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>emb|CR769766.10| Zebrafish DNA sequence from clone DKEY-207J12 in linkage group 2,
             complete sequence
          Length = 201113

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1682  ggtgtgtgattttattttattt 1703
             ||||||||||||||||||||||
Sbjct: 72056 ggtgtgtgattttattttattt 72035



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>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0681F05
          Length = 144741

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1045  actctgttgattatctgaaaga 1066
             ||||||||||||||||||||||
Sbjct: 46549 actctgttgattatctgaaaga 46528



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>dbj|AK069279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010I17, full
            insert sequence
          Length = 2380

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1045 actctgttgattatctgaaaga 1066
            ||||||||||||||||||||||
Sbjct: 689  actctgttgattatctgaaaga 710



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>ref|XM_001107158.1| PREDICTED: Macaca mulatta similar to ring finger protein 32,
           transcript variant 5 (LOC716703), mRNA
          Length = 1795

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 122 ctccccggccgcctgcccgcc 142
           |||||||||||||||||||||
Sbjct: 50  ctccccggccgcctgcccgcc 30



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>ref|XM_001107031.1| PREDICTED: Macaca mulatta similar to ring finger protein 32,
           transcript variant 3 (LOC716703), mRNA
          Length = 1962

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 122 ctccccggccgcctgcccgcc 142
           |||||||||||||||||||||
Sbjct: 51  ctccccggccgcctgcccgcc 31



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>emb|CT574570.2| Pan troglodytes chromosome X clone CH251-19I14 map Xq28, complete
              sequence
          Length = 173906

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1683   gtgtgtgattttattttattt 1703
              |||||||||||||||||||||
Sbjct: 148560 gtgtgtgattttattttattt 148580



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>gb|AC139751.2| Mus musculus BAC clone RP24-403E24 from chromosome 17, complete
             sequence
          Length = 183224

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1683  gtgtgtgattttattttattt 1703
             |||||||||||||||||||||
Sbjct: 11138 gtgtgtgattttattttattt 11118



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>gb|AC170423.1| Rhesus Macaque  BAC CH250-107D17 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 167419

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1225   ttgatgcttcttgggggcatg 1245
              |||||||||||||||||||||
Sbjct: 131168 ttgatgcttcttgggggcatg 131188



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>gb|AC101672.11| Mus musculus chromosome 5, clone RP23-115F16, complete sequence
          Length = 204025

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1684   tgtgtgattttattttatttc 1704
              |||||||||||||||||||||
Sbjct: 124293 tgtgtgattttattttatttc 124313



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 30      ctctcatcgagctcgccgacc 50
               |||||||||||||||||||||
Sbjct: 1610497 ctctcatcgagctcgccgacc 1610517



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>gb|AC148465.2| Xenopus tropicalis clone CH216-65A19, complete sequence
          Length = 167567

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1254  tgcattcagaaatcatttttt 1274
             |||||||||||||||||||||
Sbjct: 39423 tgcattcagaaatcatttttt 39403



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>gb|AC146540.2| Gasterosteus aculeatus clone CH213-16D10, complete sequence
          Length = 212474

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 808   agataggcggcttgttggagacggaagga 836
             |||| |||||||||||| |||||||||||
Sbjct: 91399 agattggcggcttgttgtagacggaagga 91427



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>gb|AC122445.3| Mus musculus BAC clone RP24-233P3 from chromosome 17, complete sequence
          Length = 173130

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 1280   actgctctgttgttggtgttgttgt 1304
              ||||||||||||||| |||||||||
Sbjct: 159777 actgctctgttgttgttgttgttgt 159801



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>gb|AC122524.3| Mus musculus BAC clone RP24-494L9 from chromosome 6, complete sequence
          Length = 201568

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1683   gtgtgtgattttattttattt 1703
              |||||||||||||||||||||
Sbjct: 166921 gtgtgtgattttattttattt 166941



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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 298     ctggctgggcatccgccctca 318
               |||||||||||||||||||||
Sbjct: 1011453 ctggctgggcatccgccctca 1011433



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 280     ccggctgctcctggggccctggctgggca 308
               |||||||||||||| | ||||||||||||
Sbjct: 4071849 ccggctgctcctggtggcctggctgggca 4071821



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>dbj|AK141685.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030022G07
            product:unclassifiable, full insert sequence
          Length = 3417

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1683 gtgtgtgattttattttattt 1703
            |||||||||||||||||||||
Sbjct: 1552 gtgtgtgattttattttattt 1532



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>dbj|AK081084.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930083G24 product:RAB12, member
            RAS oncogene family, full insert sequence
          Length = 3805

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1280 actgctctgttgttggtgttgttgt 1304
            ||||||||||||||| |||||||||
Sbjct: 1105 actgctctgttgttgttgttgttgt 1129



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>gb|AC019188.6| Homo sapiens BAC clone RP11-309H6 from 4, complete sequence
          Length = 207835

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1683   gtgtgtgattttattttattt 1703
              |||||||||||||||||||||
Sbjct: 172981 gtgtgtgattttattttattt 173001



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 775      tgatctctccggaagcgaaaa 795
                |||||||||||||||||||||
Sbjct: 19340381 tgatctctccggaagcgaaaa 19340361



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>emb|AL109913.20|HSA183K14 Human DNA sequence from clone RP11-183K14 on chromosome Xq26.3-27.3
              Contains an ADP-ribosylation factor-like 5 (ARL5)
              pseudogene and an  ELL gene (11-19 lysine-rich leukemia
              gene) (ELL) pseudogene, complete sequence
          Length = 144134

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1683   gtgtgtgattttattttattt 1703
              |||||||||||||||||||||
Sbjct: 112598 gtgtgtgattttattttattt 112618



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>gb|AC008875.9| Homo sapiens chromosome 5 clone CTD-2201E18, complete sequence
          Length = 167100

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1683   gtgtgtgattttattttattt 1703
              |||||||||||||||||||||
Sbjct: 146574 gtgtgtgattttattttattt 146594



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 659   gatgctcgtcttcgtcgacgccatc 683
             |||||||||||||| ||||||||||
Sbjct: 63018 gatgctcgtcttcgccgacgccatc 63042



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>emb|BX883048.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 7/11
          Length = 349943

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1683  gtgtgtgattttattttattt 1703
             |||||||||||||||||||||
Sbjct: 61986 gtgtgtgattttattttattt 62006



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>emb|BX842647.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 2/11
          Length = 346357

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 612   atgccgccggtcacggtggca 632
             |||||||||||||||||||||
Sbjct: 63895 atgccgccggtcacggtggca 63875



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>emb|CR759788.7| Zebrafish DNA sequence from clone CH211-153F13, complete sequence
          Length = 197075

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1252   catgcattcagaaatcatttt 1272
              |||||||||||||||||||||
Sbjct: 171501 catgcattcagaaatcatttt 171521



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>emb|AL645747.11| Mouse DNA sequence from clone RP23-436D9 on chromosome 11 Contains a
             novel gene and a signal transducing adaptor molecule (SH3
             domain and ITAM motif) 1 (Stam) pseudogene, complete
             sequence
          Length = 172052

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 132   gcctgcccgccaaccaacctctacc 156
             |||||||| ||||||||||||||||
Sbjct: 45782 gcctgccccccaaccaacctctacc 45806



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>gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A15, complete sequence
          Length = 193254

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1683  gtgtgtgattttattttattt 1703
             |||||||||||||||||||||
Sbjct: 33185 gtgtgtgattttattttattt 33205



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>dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0039C01
          Length = 151054

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 1279   gactgctctgttgttggtgttgttg 1303
              |||||||||||||||| ||||||||
Sbjct: 134651 gactgctctgttgttgttgttgttg 134627



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>dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0458G06
          Length = 139109

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1279 gactgctctgttgttggtgttgttg 1303
            |||||||||||||||| ||||||||
Sbjct: 6110 gactgctctgttgttgttgttgttg 6086



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>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0475F05
          Length = 147522

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 775   tgatctctccggaagcgaaaa 795
             |||||||||||||||||||||
Sbjct: 25872 tgatctctccggaagcgaaaa 25852



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>dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0458B05
          Length = 144917

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 775    tgatctctccggaagcgaaaa 795
              |||||||||||||||||||||
Sbjct: 108179 tgatctctccggaagcgaaaa 108159



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>gb|AC174778.2| Mus musculus BAC clone RP23-185A7 from chromosome 6, complete
            sequence
          Length = 207415

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1683 gtgtgtgattttattttattt 1703
            |||||||||||||||||||||
Sbjct: 6953 gtgtgtgattttattttattt 6973



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>emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, complete sequence
          Length = 145569

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1252  catgcattcagaaatcatttt 1272
             |||||||||||||||||||||
Sbjct: 32109 catgcattcagaaatcatttt 32089



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>emb|CT010496.14| Mouse DNA sequence from clone RP23-193I7 on chromosome 17, complete
              sequence
          Length = 209258

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 1280   actgctctgttgttggtgttgttgt 1304
              ||||||||||||||| |||||||||
Sbjct: 148274 actgctctgttgttgttgttgttgt 148250



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>emb|CT025659.7| Mouse DNA sequence from clone RP24-86F23 on chromosome 17, complete
             sequence
          Length = 183855

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1683  gtgtgtgattttattttattt 1703
             |||||||||||||||||||||
Sbjct: 43267 gtgtgtgattttattttattt 43287



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>emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chromosome 2, complete
             sequence
          Length = 204214

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1683  gtgtgtgattttattttattt 1703
             |||||||||||||||||||||
Sbjct: 28746 gtgtgtgattttattttattt 28766



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>emb|AL691424.7| Mouse DNA sequence from clone RP23-219K12 on chromosome X, complete
              sequence
          Length = 194520

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 1733   aatttcattcatatatttcttaaag 1757
              ||||| |||||||||||||||||||
Sbjct: 120481 aatttaattcatatatttcttaaag 120457



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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 42.1 bits (21), Expect = 6.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 298    ctggctgggcatccgccctca 318
              |||||||||||||||||||||
Sbjct: 609419 ctggctgggcatccgccctca 609439


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 284,785,552
Number of extensions: 15231517
Number of successful extensions: 504528
Number of sequences better than 10.0: 58
Number of HSP's gapped: 504528
Number of HSP's successfully gapped: 63
Length of query: 1773
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1750
Effective length of database: 18,503,978,556
Effective search space: 32381962473000
Effective search space used: 32381962473000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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