ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf16c16 |
|---|---|
| Clone Library Name | barley_pub |
>P21801:DHSB_YEAST Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,| mitochondrial precursor - Saccharomyces cerevisiae (Baker's yeast) Length = 266 Score = 33.9 bits (76), Expect = 0.49 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Frame = -2 Query: 574 VQCE*CCI*CEHYLWKMSRY---AFIAFQHTTSMVNTDKTTHSQAAIIRENSTINIDMYR 404 + C C C Y W +Y A + + + + D+ T ++ A++ + + +YR Sbjct: 180 ILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWLIDSRDQATKTRKAMLNNS----MSLYR 235 Query: 403 AQRLCNPTRSRGRGLTPGCGV 341 + N TR+ +GL PG + Sbjct: 236 CHTIMNCTRTCPKGLNPGLAI 256
>Q8F7V4:MURD_LEPIN UDP-N-acetylmuramoylalanine--D-glutamate ligase - Leptospira| interrogans Length = 463 Score = 33.1 bits (74), Expect = 0.83 Identities = 25/85 (29%), Positives = 39/85 (45%) Frame = +3 Query: 282 LQGAAIWITSNITRSCIHVFTPHPGVSPLPRDLVGLHNRWARYISMLIVLFSRMIAAWEW 461 L G A W NI ++C+ + G P DL L+N R I +VLF A WE Sbjct: 326 LAGMATW--KNIDQTCLIL-----GGRPKQEDLKPLYNFLIRGIGC-VVLFGEARATWES 377 Query: 462 VVLSVFTMDVVCWNAMNAYLDIFQR 536 + ++ + C +N +IF++ Sbjct: 378 GIKNIIGEKLYCVENLNDTFEIFKK 402
>Q9U1H0:CIC_DROME Putative transcription factor capicua - Drosophila melanogaster| (Fruit fly) Length = 1403 Score = 32.7 bits (73), Expect = 1.1 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Frame = +2 Query: 11 LHSQPPTRGDEPHSRSPACRDYLGCSSPSSA-----SPLPQHLDGGREKKDPSAATSCGD 175 LH PP+ G EP +RSP+ + S+P SA +P + +DGG SAA S GD Sbjct: 987 LHGYPPSHGVEPPARSPSYKSM--PSTPKSATYLMSAPPERGMDGGM-SGCASAAASGGD 1043
>Q72NP4:MURD_LEPIC UDP-N-acetylmuramoylalanine--D-glutamate ligase - Leptospira| interrogans serogroup Icterohaemorrhagiae serovar copenhageni Length = 463 Score = 32.0 bits (71), Expect = 1.9 Identities = 24/85 (28%), Positives = 39/85 (45%) Frame = +3 Query: 282 LQGAAIWITSNITRSCIHVFTPHPGVSPLPRDLVGLHNRWARYISMLIVLFSRMIAAWEW 461 L G A W NI ++C+ + G P DL L+N + I +VLF A WE Sbjct: 326 LAGMATW--KNIDQTCLIL-----GGRPKQEDLKPLYNFLIKGIGC-VVLFGEARATWES 377 Query: 462 VVLSVFTMDVVCWNAMNAYLDIFQR 536 + ++ + C +N +IF++ Sbjct: 378 GIKNIIGEKLYCVENLNDTFEIFKK 402
>Q6FWS8:DHSB_CANGA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit,| mitochondrial precursor - Candida glabrata (Yeast) (Torulopsis glabrata) Length = 253 Score = 31.6 bits (70), Expect = 2.4 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Frame = -2 Query: 574 VQCE*CCI*CEHYLWKMSRY---AFIAFQHTTSMVNTDKTTHSQAAIIRENSTINIDMYR 404 + C C C Y W Y A + + + + D+ T ++ +++ + + +YR Sbjct: 167 ILCACCSTSCPSYWWNQEEYLGPAVLMQAYRWLIDSRDQATKARRTMLQNS----MSLYR 222 Query: 403 AQRLCNPTRSRGRGLTPG 350 + N TR+ +GL PG Sbjct: 223 CHTIMNCTRTCPKGLNPG 240
>Q7RX84:CWC22_NEUCR Pre-mRNA-splicing factor cwc-22 - Neurospora crassa| Length = 1010 Score = 31.6 bits (70), Expect = 2.4 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = +2 Query: 5 SPLHSQP--PTRGDEPHSRSPACRDYLGCSSPSSASPLPQHLDGGREKKDPSAATSCGD 175 SP S P TR P ++SP+ RD G SP +P P +DPS S G+ Sbjct: 7 SPSRSHPHDATRSPSPRTQSPSPRDEDGSRSPGERTPSP-------PSRDPSPYRSPGE 58
>Q9JLV1:BAG3_MOUSE BAG family molecular chaperone regulator 3 - Mus musculus (Mouse)| Length = 577 Score = 31.6 bits (70), Expect = 2.4 Identities = 22/67 (32%), Positives = 32/67 (47%) Frame = +2 Query: 17 SQPPTRGDEPHSRSPACRDYLGCSSPSSASPLPQHLDGGREKKDPSAATSCGDGVCHRGH 196 +QPPT S+SPA D CSS SS++ LP S +S G RG+ Sbjct: 166 AQPPTAHGPERSQSPAASD---CSSSSSSASLPS-----------SGRSSLGSHQLPRGY 211 Query: 197 LSIGLLN 217 + I +++ Sbjct: 212 IPIPVIH 218
>O95817:BAG3_HUMAN BAG family molecular chaperone regulator 3 - Homo sapiens (Human)| Length = 575 Score = 31.6 bits (70), Expect = 2.4 Identities = 22/67 (32%), Positives = 32/67 (47%) Frame = +2 Query: 17 SQPPTRGDEPHSRSPACRDYLGCSSPSSASPLPQHLDGGREKKDPSAATSCGDGVCHRGH 196 +QPP S+SPA D CSS SS++ LP S +S G RG+ Sbjct: 160 AQPPASHGPERSQSPAASD---CSSSSSSASLPS-----------SGRSSLGSHQLPRGY 205 Query: 197 LSIGLLN 217 +SI +++ Sbjct: 206 ISIPVIH 212
>P30935:SSR3_MOUSE Somatostatin receptor type 3 - Mus musculus (Mouse)| Length = 428 Score = 31.2 bits (69), Expect = 3.2 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -1 Query: 173 LRTKSPHSDPSSLARHRDVEEEERPRKEKSTRGSRGTLANG 51 +R++ P S P + EEEE R+E+ R RG NG Sbjct: 344 IRSQEPGSGPPEKTEEEEDEEEEERREEEERRMQRGQEMNG 384
>P30936:SSR3_RAT Somatostatin receptor type 3 - Rattus norvegicus (Rat)| Length = 428 Score = 30.8 bits (68), Expect = 4.1 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -1 Query: 173 LRTKSPHSDPSSLARHRDVEEEERPRKEKSTRGSRGTLANG 51 +R++ P S P + EEEE R+E+ R RG NG Sbjct: 344 VRSQEPGSGPPEKTEEEEDEEEEERREEEERRMQRGQEMNG 384
>P14585:LIN12_CAEEL Protein lin-12 precursor - Caenorhabditis elegans| Length = 1429 Score = 30.8 bits (68), Expect = 4.1 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%) Frame = +2 Query: 38 DEPHSRSPACRDYLGCSSPSSASPLPQHLDGGR----EKKDPSAATSCGDGVC 184 D P RS C++ C SS P G EK+D A+ C GVC Sbjct: 212 DHPDGRSMYCQNGGFCDKASSKCQCPPGYHGSTCELLEKEDSCASNPCSHGVC 264
>P51612:XPC_MOUSE DNA-repair protein complementing XP-C cells homolog - Mus musculus| (Mouse) Length = 930 Score = 30.4 bits (67), Expect = 5.4 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -1 Query: 230 KAPKN*EDLWTDARGDRHHLRTKSP--HSDPSSLARHRDVEEEERPRKEKSTRGSRGTLA 57 K K+ ++ + G L + SP H+ P++ R ++ E R + + RG RGT Sbjct: 326 KGRKSSKETSVEGPGGSSELSSNSPESHNKPTTSRRIKEEETLSEGRGKATARGKRGTGT 385 Query: 56 NGNGARRR 33 G+ RR+ Sbjct: 386 AGSRQRRK 393
>Q00706:STCK_EMENI Putative sterigmatocystin biosynthesis fatty acid synthase subunit| beta - Emericella nidulans (Aspergillus nidulans) Length = 1914 Score = 30.4 bits (67), Expect = 5.4 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Frame = +2 Query: 56 SPACRDYLGCSSPSSASPLPQHLDGGREKKDPSAATSCGDGVCHRGHLSIGLLNFSVPFY 235 S AC D +SP+S PQ + PS+ + + RG +I L +PF+ Sbjct: 1787 SHACDDLSRSTSPNS----PQTMSECIAHHIPSSCSVTNETELSRGRATIPLAGVDIPFH 1842 Query: 236 IQRLVPPL-GQRQYL 277 Q L + G RQYL Sbjct: 1843 SQMLRGHIDGYRQYL 1857
>Q5KIA9:SET1_CRYNE Histone-lysine N-methyltransferase, H3 lysine-4 specific -| Cryptococcus neoformans (Filobasidiella neoformans) Length = 1469 Score = 30.0 bits (66), Expect = 7.1 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 11/50 (22%) Frame = -1 Query: 212 EDLWTDARGDR-------HHLR----TKSPHSDPSSLARHRDVEEEERPR 96 ED WT+ RG R H R ++S +S SS + + + EEERPR Sbjct: 819 EDSWTNERGRRLKGESSTRHWRARSLSRSSYSSYSSYSSYSEESEEERPR 868
>P23498:OSTP_CHICK Osteopontin precursor - Gallus gallus (Chicken)| Length = 264 Score = 29.6 bits (65), Expect = 9.2 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%) Frame = -1 Query: 233 KKAPKN*EDLWTDARGDRH----HLRTKSPHSDPSSLARHRDVEEEERPRKEKSTRGSRG 66 K A K ED T GD L +S D LA+H+ VE + RPR + G Sbjct: 160 KAARKLIEDDATAEVGDSQLAGLWLPKESREQDSRELAQHQSVENDSRPRFDSPEVGGGD 219 Query: 65 TLANGNGARRRALVAANGGET 3 + A+ R +L + + +T Sbjct: 220 SKASAGVDSRESLASRSAVDT 240
>P56941:NPC1_PIG Niemann-Pick C1 protein precursor - Sus scrofa (Pig)| Length = 1277 Score = 29.6 bits (65), Expect = 9.2 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Frame = +3 Query: 345 PHPGVSPLPRDLVGLHNR----WARYISMLIVLFSRMIAAW 455 P P P+P ++GL W+ Y++ LIV F A W Sbjct: 251 PQPPPPPVPWRILGLDAMYVIMWSSYMAFLIVFFGAFFAVW 291
>Q69154:IE63_MCMVS Transcriptional regulator IE63 homolog - Murine cytomegalovirus| (strain Smith) Length = 841 Score = 29.6 bits (65), Expect = 9.2 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = -1 Query: 200 TDARGDRHHLR---TKSPHSDPSSLARHRDVEEEERPRKEKSTRGSRGTLANGN 48 T + RHH R T+S H SS +R R + R + S RG +NG+ Sbjct: 511 TSSNHHRHHTRRARTRSTHDSSSSGSRRRSSATDGRRSRRGSRRGEAQRESNGH 564
>Q0DWF2:IAA10_ORYSJ Auxin-responsive protein IAA10 - Oryza sativa subsp. japonica| (Rice) Length = 281 Score = 29.6 bits (65), Expect = 9.2 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 86 SSPSSASPLPQHLDGGREKKDPSAATSCGDGVCHRGHLSIGLLNF 220 SS SS+SP GG+ + P+A TS G H S G++ + Sbjct: 71 SSVSSSSPAAAAAAGGKRAEGPTATTSPGTVASGHPHSSFGVVGW 115
>A2XB18:IAA10_ORYSI Auxin-responsive protein IAA10 - Oryza sativa subsp. indica (Rice)| Length = 281 Score = 29.6 bits (65), Expect = 9.2 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 86 SSPSSASPLPQHLDGGREKKDPSAATSCGDGVCHRGHLSIGLLNF 220 SS SS+SP GG+ + P+A TS G H S G++ + Sbjct: 71 SSVSSSSPAAAAAAGGKRAEGPTATTSPGTVASGHPHSSFGVVGW 115
>P98005:COX13_THET8 Cytochrome c oxidase polypeptide I+III - Thermus thermophilus| (strain HB8 / ATCC 27634 / DSM 579) Length = 791 Score = 29.6 bits (65), Expect = 9.2 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 10/81 (12%) Frame = +3 Query: 354 GVSPLPRDLVGLH----NRWARYISMLIVLFSRMIAA------WEWVVLSVFTMDVVCWN 503 GV P D +H + W Y + + F +AA W WV L++F +V W Sbjct: 538 GVELKPEDPAHIHLPNSSFWPFYSAATLFAFFVAVAALPVPNVWMWVFLALFAYGLVRWA 597 Query: 504 AMNAYLDIFQR*CSHYIQHYS 566 + Y SH ++H++ Sbjct: 598 LEDEY--------SHPVEHHT 610 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 121,140,010 Number of extensions: 2894947 Number of successful extensions: 8312 Number of sequences better than 10.0: 20 Number of HSP's gapped: 8308 Number of HSP's successfully gapped: 20 Length of query: 206 Length of database: 100,686,439 Length adjustment: 108 Effective length of query: 98 Effective length of database: 71,062,579 Effective search space: 6964132742 Effective search space used: 6964132742 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
