ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf16c16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 48 0.037
2gb|AY050668.1| Homo sapiens PKC-potentiated PP1 inhibitory prote... 44 0.59
3emb|AL161716.14| Human DNA sequence from clone RP11-266E6 on chr... 44 0.59
4gb|AC011479.7| Homo sapiens chromosome 19 clone CTB-102L5, compl... 44 0.59
5gb|AC193793.1| Gallus gallus BAC clone CH261-30P23 from chromoso... 42 2.3
6gb|DQ244584.1| Zea mays clone 9423 mRNA sequence 42 2.3
7ref|NM_001072581.1| Oryza sativa (japonica cultivar-group) Os12g... 42 2.3
8ref|NM_001072237.1| Oryza sativa (japonica cultivar-group) Os11g... 42 2.3
9gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
10gb|AC073094.11| Homo sapiens BAC clone RP11-369D24 from 7, compl... 42 2.3
11gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete se... 42 2.3
12emb|CR936364.7| M.truncatula DNA sequence from clone MTH2-193I1 ... 42 2.3
13dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
15emb|AL139378.15| Human DNA sequence from clone RP11-271B5 on chr... 42 2.3
16dbj|AK120730.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
17dbj|AK103113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
18gb|AC125341.4| Mus musculus BAC clone RP24-459O3 from 6, complet... 42 2.3
19emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085... 42 2.3
20emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003... 42 2.3
21ref|NM_133493.2| Homo sapiens CD109 molecule (CD109), mRNA 40 9.1
22ref|XM_518588.2| PREDICTED: Pan troglodytes CD109 (CD109), mRNA 40 9.1
23gb|AY788891.1| Homo sapiens CD109 mRNA, complete cds 40 9.1
24ref|XM_001112930.1| PREDICTED: Macaca mulatta similar to CD109, ... 40 9.1
25ref|XM_001112898.1| PREDICTED: Macaca mulatta similar to CD109, ... 40 9.1
26gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map... 40 9.1
27ref|XM_659192.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 9.1
28gb|AY149920.1| Homo sapiens activated T-cell marker CD109 (CD109... 40 9.1
29gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosom... 40 9.1
30gb|AY376991.1| Litopenaeus vannamei microsatellite TUGAPv7-9.188... 40 9.1
31dbj|AK123960.1| Homo sapiens cDNA FLJ41966 fis, clone PUAEN2009174 40 9.1
32gb|AC090008.14| Mus muclulus Strain C57BL6/J chromosome 2 BAC, R... 40 9.1
33ref|XM_380516.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 9.1
34ref|NM_001046031.1| Bos taurus junctional sarcoplasmic reticulum... 40 9.1
35gb|AC091877.2| Homo sapiens chromosome 5 clone CTD-3061E14, comp... 40 9.1
36emb|CR730384.2|CNS0GQID Tetraodon nigroviridis full-length cDNA 40 9.1
37emb|CR729517.2|CNS0GPUB Tetraodon nigroviridis full-length cDNA 40 9.1
38emb|CR719070.2|CNS0GHS4 Tetraodon nigroviridis full-length cDNA 40 9.1
39gb|AF410459.1| Homo sapiens CD109 (CD109) mRNA, complete cds 40 9.1
40gb|AC104806.3| Homo sapiens BAC clone RP11-584P21 from 4, comple... 40 9.1
41emb|CR639312.2|CNS0ES9I Tetraodon nigroviridis full-length cDNA 40 9.1
42emb|AL591480.8| Human DNA sequence from clone RP11-525G3 on chro... 40 9.1
43emb|AL356257.14| Human DNA sequence from clone RP11-789G22 on ch... 40 9.1
44gb|AC092751.4| Genomic sequence for Mus musculus, clone RP23-113... 40 9.1
45emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 9.1
46emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genom... 40 9.1
47emb|BX545848.23| Zebrafish DNA sequence from clone DKEY-8O19 in ... 40 9.1
48emb|AL834478.1|HSM805581 Homo sapiens mRNA; cDNA DKFZp762L1111 (... 40 9.1
49emb|AL592522.12| Mouse DNA sequence from clone RP23-210M6 on chr... 40 9.1
50gb|AC154545.2| Mus musculus BAC clone RP23-431G16 from chromosom... 40 9.1
51gb|AC079921.5| Homo sapiens BAC clone RP11-360F5 from 4, complet... 40 9.1
52gb|AC104463.3| Homo sapiens chromosome 1 clone RP11-569A11, comp... 40 9.1
53gb|AC146590.25| Medicago truncatula clone mth2-145p10, complete ... 40 9.1
54ref|XM_317010.2| Anopheles gambiae str. PEST ENSANGP00000019306 ... 40 9.1
55emb|BX641095.1|HSM806923 Homo sapiens mRNA; cDNA DKFZp686N23150 ... 40 9.1
56gb|AC153644.3| Mus musculus BAC clone RP24-531A1 from 1, complet... 40 9.1
57emb|AL773563.12| Mouse DNA sequence from clone RP23-414L19 on ch... 40 9.1
58emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb... 40 9.1
59emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239... 40 9.1

>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089
 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 86      tcttctccttcctcggcctctcct 109
               ||||||||||||||||||||||||
Sbjct: 1428297 tcttctccttcctcggcctctcct 1428320



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>gb|AY050668.1| Homo sapiens PKC-potentiated PP1 inhibitory protein (PPP1R14A) gene,
              complete cds
          Length = 169660

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 89     tctccttcctcggcctctcctc 110
              ||||||||||||||||||||||
Sbjct: 123854 tctccttcctcggcctctcctc 123833



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>emb|AL161716.14| Human DNA sequence from clone RP11-266E6 on chromosome 13 Contains the
             3' end of a novel gene, a guanidinoacetate
             N-methyltransferase (GAMT) pseudogene and a CpG island,
             complete sequence
          Length = 164345

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 444   atagctgcttgggagtgggtggttttatcc 473
             |||||||||||| ||||||||| |||||||
Sbjct: 30434 atagctgcttggcagtgggtggctttatcc 30405



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>gb|AC011479.7| Homo sapiens chromosome 19 clone CTB-102L5, complete sequence
          Length = 169661

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 89     tctccttcctcggcctctcctc 110
              ||||||||||||||||||||||
Sbjct: 123855 tctccttcctcggcctctcctc 123834



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>gb|AC193793.1| Gallus gallus BAC clone CH261-30P23 from chromosome z, complete sequence
          Length = 181135

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 84     gctcttctccttcctcggcctctcc 108
              |||||||||||||||| ||||||||
Sbjct: 164597 gctcttctccttcctctgcctctcc 164573



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>gb|DQ244584.1| Zea mays clone 9423 mRNA sequence
          Length = 1388

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 96  cctcggcctctcctcttcctc 116
           |||||||||||||||||||||
Sbjct: 6   cctcggcctctcctcttcctc 26



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>ref|NM_001072581.1| Oryza sativa (japonica cultivar-group) Os12g0126300 (Os12g0126300)
           mRNA, complete cds
          Length = 1332

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 81  ggtgctcttctccttcctcggcctc 105
           ||||||||||||| |||||||||||
Sbjct: 153 ggtgctcttctccgtcctcggcctc 129



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>ref|NM_001072237.1| Oryza sativa (japonica cultivar-group) Os11g0139500 (Os11g0139500)
            mRNA, partial cds
          Length = 4144

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 525  attttccagagataatgttca 545
            |||||||||||||||||||||
Sbjct: 4116 attttccagagataatgttca 4136



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>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0068G15, complete sequence
          Length = 146175

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 525   attttccagagataatgttca 545
             |||||||||||||||||||||
Sbjct: 38902 attttccagagataatgttca 38922



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>gb|AC073094.11| Homo sapiens BAC clone RP11-369D24 from 7, complete sequence
          Length = 189126

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 87    cttctccttcctcggcctctcctcttcct 115
             |||||||||||| |||||| |||||||||
Sbjct: 89848 cttctccttccttggcctcccctcttcct 89876



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>gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete sequence
          Length = 135248

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 543   tcacattatatacaacattat 563
             |||||||||||||||||||||
Sbjct: 10688 tcacattatatacaacattat 10708



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>emb|CR936364.7| M.truncatula DNA sequence from clone MTH2-193I1 on chromosome 3, complete
              sequence
          Length = 119364

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 543    tcacattatatacaacattat 563
              |||||||||||||||||||||
Sbjct: 110050 tcacattatatacaacattat 110070



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 81      ggtgctcttctccttcctcggcctc 105
               ||||||||||||| |||||||||||
Sbjct: 1273613 ggtgctcttctccgtcctcggcctc 1273637



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 526     ttttccagagataatgttca 545
               ||||||||||||||||||||
Sbjct: 1762323 ttttccagagataatgttca 1762342



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 525     attttccagagataatgttca 545
               |||||||||||||||||||||
Sbjct: 1821072 attttccagagataatgttca 1821092



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>emb|AL139378.15| Human DNA sequence from clone RP11-271B5 on chromosome 13 Contains the
              FGF9 gene for fibroblast growth factor 9 (glia-activating
              factor (GAF, HBFG-9)), a ribosomal protein S7 (40S
              ribosomal protein S7) (RPS7) pseudogene and two CpG
              islands, complete sequence
          Length = 166703

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 83     tgctcttctccttcctcggcc 103
              |||||||||||||||||||||
Sbjct: 143148 tgctcttctccttcctcggcc 143168



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>dbj|AK120730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003B09, full
            insert sequence
          Length = 4145

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 525  attttccagagataatgttca 545
            |||||||||||||||||||||
Sbjct: 4117 attttccagagataatgttca 4137



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>dbj|AK103113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119E15, full
            insert sequence
          Length = 1169

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 525  attttccagagataatgttca 545
            |||||||||||||||||||||
Sbjct: 1141 attttccagagataatgttca 1161



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>gb|AC125341.4| Mus musculus BAC clone RP24-459O3 from 6, complete sequence
          Length = 167607

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 88    ttctccttcctcggcctctcctcttcctc 116
             ||||||||||||| |||||| ||||||||
Sbjct: 98003 ttctccttcctcgtcctctcttcttcctc 98031



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>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 121556

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 81    ggtgctcttctccttcctcggcctc 105
             ||||||||||||| |||||||||||
Sbjct: 19169 ggtgctcttctccgtcctcggcctc 19145



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>emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 157453

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 81     ggtgctcttctccttcctcggcctc 105
              ||||||||||||| |||||||||||
Sbjct: 155556 ggtgctcttctccgtcctcggcctc 155532



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>ref|NM_133493.2| Homo sapiens CD109 molecule (CD109), mRNA
          Length = 9447

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 542  ttcacattatatacaacatt 561
            ||||||||||||||||||||
Sbjct: 4216 ttcacattatatacaacatt 4197



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>ref|XM_518588.2| PREDICTED: Pan troglodytes CD109 (CD109), mRNA
          Length = 5884

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 542  ttcacattatatacaacatt 561
            ||||||||||||||||||||
Sbjct: 3903 ttcacattatatacaacatt 3884



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>gb|AY788891.1| Homo sapiens CD109 mRNA, complete cds
          Length = 4369

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 542  ttcacattatatacaacatt 561
            ||||||||||||||||||||
Sbjct: 3765 ttcacattatatacaacatt 3746



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>ref|XM_001112930.1| PREDICTED: Macaca mulatta similar to CD109, transcript variant 2
            (LOC716136), mRNA
          Length = 5599

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 542  ttcacattatatacaacatt 561
            ||||||||||||||||||||
Sbjct: 4222 ttcacattatatacaacatt 4203



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>ref|XM_001112898.1| PREDICTED: Macaca mulatta similar to CD109, transcript variant 1
            (LOC716136), mRNA
          Length = 5445

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 542  ttcacattatatacaacatt 561
            ||||||||||||||||||||
Sbjct: 4068 ttcacattatatacaacatt 4049



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>gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map human ortholog q26.2,
             complete sequence
          Length = 180904

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    ttctccttcctcggcctctc 107
             ||||||||||||||||||||
Sbjct: 98261 ttctccttcctcggcctctc 98242



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>ref|XM_659192.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6680.2), mRNA
          Length = 1470

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 atgtcttcaccccacatcca 353
           ||||||||||||||||||||
Sbjct: 164 atgtcttcaccccacatcca 145



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>gb|AY149920.1| Homo sapiens activated T-cell marker CD109 (CD109) mRNA, complete cds
          Length = 4338

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 542  ttcacattatatacaacatt 561
            ||||||||||||||||||||
Sbjct: 3791 ttcacattatatacaacatt 3772



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>gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosome 1, complete sequence
          Length = 167927

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     cttctccttcctcggcctct 106
              ||||||||||||||||||||
Sbjct: 110304 cttctccttcctcggcctct 110323



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>gb|AY376991.1| Litopenaeus vannamei microsatellite TUGAPv7-9.188 sequence
          Length = 517

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 85  ctcttctccttcctcggcctctcctcttcctc 116
           |||||||||||||||  ||||| |||||||||
Sbjct: 488 ctcttctccttcctcctcctcttctcttcctc 457



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>dbj|AK123960.1| Homo sapiens cDNA FLJ41966 fis, clone PUAEN2009174
          Length = 2843

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 542  ttcacattatatacaacatt 561
            ||||||||||||||||||||
Sbjct: 2000 ttcacattatatacaacatt 1981



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>gb|AC090008.14| Mus muclulus Strain C57BL6/J chromosome 2 BAC, RP23-163H21, Complete
              Sequence, complete sequence
          Length = 196733

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 89     tctccttcctcggcctctcctcttcctc 116
              ||||||||||| |||| |||||||||||
Sbjct: 146552 tctccttcctctgcctttcctcttcctc 146525



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>ref|XM_380516.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00340.1)
           partial mRNA
          Length = 2391

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 409 acatatcaatgttgatagtg 428
           ||||||||||||||||||||
Sbjct: 852 acatatcaatgttgatagtg 833



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>ref|NM_001046031.1| Bos taurus junctional sarcoplasmic reticulum protein 1 (JSRP1),
           mRNA
 gb|BC110244.1| Bos taurus junctional sarcoplasmic reticulum protein 1, mRNA (cDNA
           clone MGC:134155 IMAGE:8064284), complete cds
          Length = 1274

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 87  cttctccttcctcggcctctcctc 110
           ||||||||| ||||||||||||||
Sbjct: 953 cttctcctttctcggcctctcctc 930



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>gb|AC091877.2| Homo sapiens chromosome 5 clone CTD-3061E14, complete sequence
          Length = 147536

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   ataggtcttcttaatttttc 222
             ||||||||||||||||||||
Sbjct: 31317 ataggtcttcttaatttttc 31336



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>emb|CR730384.2|CNS0GQID Tetraodon nigroviridis full-length cDNA
          Length = 1229

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  tcttctccttcctcggcctc 105
           ||||||||||||||||||||
Sbjct: 145 tcttctccttcctcggcctc 164



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>emb|CR729517.2|CNS0GPUB Tetraodon nigroviridis full-length cDNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  tcttctccttcctcggcctc 105
           ||||||||||||||||||||
Sbjct: 141 tcttctccttcctcggcctc 160



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>emb|CR719070.2|CNS0GHS4 Tetraodon nigroviridis full-length cDNA
          Length = 671

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 93  cttcctcggcctctcctcttcctc 116
           ||||||| ||||||||||||||||
Sbjct: 214 cttcctccgcctctcctcttcctc 191



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>gb|AF410459.1| Homo sapiens CD109 (CD109) mRNA, complete cds
          Length = 5883

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 542  ttcacattatatacaacatt 561
            ||||||||||||||||||||
Sbjct: 3903 ttcacattatatacaacatt 3884



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>gb|AC104806.3| Homo sapiens BAC clone RP11-584P21 from 4, complete sequence
          Length = 147777

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    ttctccttcctcggcctctc 107
             ||||||||||||||||||||
Sbjct: 36797 ttctccttcctcggcctctc 36778



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>emb|CR639312.2|CNS0ES9I Tetraodon nigroviridis full-length cDNA
          Length = 1433

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  tcttctccttcctcggcctc 105
           ||||||||||||||||||||
Sbjct: 144 tcttctccttcctcggcctc 163



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>emb|AL591480.8| Human DNA sequence from clone RP11-525G3 on chromosome 6 Contains the
            3' end of the gene for CD109 (CD109) and a CpG island,
            complete sequence
          Length = 91419

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 542  ttcacattatatacaacatt 561
            ||||||||||||||||||||
Sbjct: 3632 ttcacattatatacaacatt 3613



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>emb|AL356257.14| Human DNA sequence from clone RP11-789G22 on chromosome 13 Contains the
             5' end of the ABCC4 gene for ATP-binding cassette,
             sub-family C (CFTR/MRP), member4, a novel gene and a CpG
             island, complete sequence
          Length = 193483

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    ttctccttcctcggcctctc 107
             ||||||||||||||||||||
Sbjct: 56063 ttctccttcctcggcctctc 56044



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>gb|AC092751.4| Genomic sequence for Mus musculus, clone RP23-113P18, complete sequence
          Length = 209990

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 89     tctccttcctcggcctctcctcttcctc 116
              ||||||||||| |||| |||||||||||
Sbjct: 113714 tctccttcctctgcctttcctcttcctc 113741



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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 38      gacgagccccattcccgttc 57
               ||||||||||||||||||||
Sbjct: 2668979 gacgagccccattcccgttc 2668960



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>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16
          Length = 349746

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    tcttcctcaacatctcgatg 128
              ||||||||||||||||||||
Sbjct: 310404 tcttcctcaacatctcgatg 310385



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>emb|BX545848.23| Zebrafish DNA sequence from clone DKEY-8O19 in linkage group 20 Contains
              the gene for a novel protein (zgc:63746), the gene for a
              novel protein (zgc:55614), the gene for the 5' end of a
              novel protein similar to mouse and human cyclin-dependent
              kinase (CDC2-like) 11 (CDK11), the gene for a novel protein
              similar to vertebrate mitogen-activated protein kinase
              kinase kinase 5 (MAP3K5), a novel gene and eleven CpG
              islands, complete sequence
          Length = 199986

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    tttttcggtgcctttttata 236
              ||||||||||||||||||||
Sbjct: 179070 tttttcggtgcctttttata 179051



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>emb|AL834478.1|HSM805581 Homo sapiens mRNA; cDNA DKFZp762L1111 (from clone DKFZp762L1111)
          Length = 2938

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 542  ttcacattatatacaacatt 561
            ||||||||||||||||||||
Sbjct: 2018 ttcacattatatacaacatt 1999



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>emb|AL592522.12| Mouse DNA sequence from clone RP23-210M6 on chromosome 11 Contains the
             genes for two novel 7 transmembrane receptor (rhodopsin
             family) domain-containing proteins, a high mobility group
             box 1 (Hmgb1) pseudogene, the Cias1 gene for cold
             autoinflammatory syndrome 1 homolog (human), a novel gene
             (4933439C10Rik), the gene for a novel protein
             (D130067D09), a ribosomal protein L18 (Rpl18) pseudogene,
             an ariadne homolog 2 (Drosophila) (Arih2) pseudogene, the
             gene for a novel zinc finger domain-containing protein,
             the 3' end of the gene for a novel protein and one CpG
             island, complete sequence
          Length = 157300

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 85    ctcttctccttcctcggcctctcctctt 112
             |||||||||||||||  |||||||||||
Sbjct: 33557 ctcttctccttcctcctcctctcctctt 33530



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>gb|AC154545.2| Mus musculus BAC clone RP23-431G16 from chromosome 16, complete
             sequence
          Length = 202933

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   aatgatagctgcttgggagt 459
             ||||||||||||||||||||
Sbjct: 85599 aatgatagctgcttgggagt 85580



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>gb|AC079921.5| Homo sapiens BAC clone RP11-360F5 from 4, complete sequence
          Length = 189796

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   ataggtcttcttaatttttc 222
             ||||||||||||||||||||
Sbjct: 11772 ataggtcttcttaatttttc 11791



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>gb|AC104463.3| Homo sapiens chromosome 1 clone RP11-569A11, complete sequence
          Length = 156818

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     ttctccttcctcggcctctc 107
              ||||||||||||||||||||
Sbjct: 117711 ttctccttcctcggcctctc 117692



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>gb|AC146590.25| Medicago truncatula clone mth2-145p10, complete sequence
          Length = 130834

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   tttttcggtgcctttttata 236
             ||||||||||||||||||||
Sbjct: 58023 tttttcggtgcctttttata 58042



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>ref|XM_317010.2| Anopheles gambiae str. PEST ENSANGP00000019306
           (ENSANGG00000016817), partial mRNA
          Length = 1515

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 50  tcccgttcgccagcgtgccgcgac 73
           ||||||||||||||| ||||||||
Sbjct: 169 tcccgttcgccagcgcgccgcgac 192



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>emb|BX641095.1|HSM806923 Homo sapiens mRNA; cDNA DKFZp686N23150 (from clone DKFZp686N23150)
          Length = 4237

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 542  ttcacattatatacaacatt 561
            ||||||||||||||||||||
Sbjct: 3578 ttcacattatatacaacatt 3559



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>gb|AC153644.3| Mus musculus BAC clone RP24-531A1 from 1, complete sequence
          Length = 166988

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    cttctccttcctcggcctct 106
             ||||||||||||||||||||
Sbjct: 10361 cttctccttcctcggcctct 10380



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>emb|AL773563.12| Mouse DNA sequence from clone RP23-414L19 on chromosome 2, complete
             sequence
          Length = 184665

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 89    tctccttcctcggcctctcctcttcctc 116
             ||||||||||| |||| |||||||||||
Sbjct: 68751 tctccttcctctgcctttcctcttcctc 68778



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>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132026

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 526   ttttccagagataatgttca 545
             ||||||||||||||||||||
Sbjct: 78159 ttttccagagataatgttca 78140



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>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 104307

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 526  ttttccagagataatgttca 545
            ||||||||||||||||||||
Sbjct: 4598 ttttccagagataatgttca 4579


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 102,707,656
Number of extensions: 5720565
Number of successful extensions: 122940
Number of sequences better than 10.0: 59
Number of HSP's gapped: 122940
Number of HSP's successfully gapped: 60
Length of query: 620
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 598
Effective length of database: 18,508,616,841
Effective search space: 11068152870918
Effective search space used: 11068152870918
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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