ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf21g21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001058018.1| Oryza sativa (japonica cultivar-group) Os03g0785500 (Os03g0785500) mRNA, complete cds Length = 1415 Score = 842 bits (425), Expect = 0.0 Identities = 846/985 (85%), Gaps = 1/985 (0%) Strand = Plus / Plus Query: 175 ccggcgagatcgggagtattctataaattcacccagcaggatcttccagcttggaaaccg 234 ||||||||||||||||| ||||||| ||||| |||||| | || ||||||||||| ||| Sbjct: 145 ccggcgagatcgggagtgttctataggttcactcagcagaacctcccagcttggaagccg 204 Query: 235 gcaatgacaccaggatacgtgatagccattttcttggtaattgggattatttttgtaccg 294 |||||||||||||||| |||||| | ||||||||| | || || ||| |||||| || Sbjct: 205 gcaatgacaccaggatgtgtgataactattttcttgatgatcggagttacttttgttcct 264 Query: 295 gtcggactaatttgccttcaagcttcaaacagagttgcagaagttgttcaccgctatgat 354 || || || |||||||||| |||||||| ||||||||| ||| |||||| |||||| Sbjct: 265 gttgggcttgtttgccttcatgcttcaaatcatgttgcagaaattgctcaccgttatgat 324 Query: 355 attgattgtctacctaatgcttacagaagtaataagcaggcttatatcaaagacagctca 414 ||||||||| ||||||||||||||| ||| |||| |||||| ||||| ||||| ||||| Sbjct: 325 attgattgtgtacctaatgcttacaaaagaaataggcaggcgtatattaaagatagctcg 384 Query: 415 atttcaaagaagtgtattcagaaagtgaaggttcaataccatatgaaagctccaatttat 474 ||||||||||| || | ||| ||||||||||| |||||| ||||| ||| ||||||||| Sbjct: 385 atttcaaagaactgcactcaagaagtgaaggttaaataccttatgagagcaccaatttat 444 Query: 475 gtgtattatgaactcgacaactactaccagaatcatcgtaggtatatcaaaagtagaagc 534 |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| Sbjct: 445 gtgtattatgaactcgacaacttctaccagaatcatcgcaggtatgtcaaaagtagaagt 504 Query: 535 gacaaacaactacgctatgggctgaagtacactgatagctcatgcagtccaatagaaagg 594 || || |||||||||||||||| ||||||||| |||| ||||| ||| || |||||| Sbjct: 505 gataagcaactacgctatgggcagaagtacacacatagttcatgtgatcctattgaaagg 564 Query: 595 agcaacggccttccaattgttccctgcggattgattgcctggagcttgttcaatgatact 654 | | ||||||||||||||||| || || |||||||||||||||||||||||||| ||| Sbjct: 565 aatgatggccttccaattgttccatgtggcttgattgcctggagcttgttcaatgacact 624 Query: 655 tatgactttacccgtggatccatgggaataatggttgataggaaaaatatttcatggaga 714 |||| |||||| ||||||||| || ||||| ||| | ||||| ||||||||||||| | Sbjct: 625 tatggatttacctgtggatccacggaaataaaggtcaacaggaagaatatttcatggaaa 684 Query: 715 agtgatcgggaacataagtatggcaaggatgtctatcctttcaactttcagaatggatcc 774 ||||| ||||| ||||||| |||||||||||| |||||||| |||||||||||||||||| Sbjct: 685 agtgaccgggagcataagtttggcaaggatgtatatccttttaactttcagaatggatcc 744 Query: 775 ttgattggaggagggaagcttgaccctgatataccactaagcaatcaggaagatcttatt 834 || ||||| ||||| || |||||||||| | ||||||| | | | |||||||||||||| Sbjct: 745 ttaattgggggaggaaaacttgaccctgctttaccactgaaccagcaggaagatcttata 804 Query: 835 gtgtggatgcgcgcagctgctcttccccagttttcgaaagctgtatggtgtcattgaaga 894 ||||||||||| | |||||||||||||| ||| |||||||| ||||||||||||||||| Sbjct: 805 gtgtggatgcgtacggctgctcttccccaattt-cgaaagctctatggtgtcattgaaga 863 Query: 895 ggatatacaagctgacgaaatcattaccatgcacataacaaacaattacaatacctacag 954 |||| |||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 864 ggatctacaggctgatgaaatcattacgatgcacatagcaaacaattacaatacctacag 923 Query: 955 ttttggtggaaagaaaagcctggttcttacaacatcaacctggctaggtggcaagaatga 1014 |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 924 ttttggcggcaagaaaagcctaattcttacaacatcaacctggctaggtggcaagaatga 983 Query: 1015 cttccttggatatgcgtaccttatcactggttcctcgagcattttcttgtccattgtctt 1074 ||| |||||||| || || ||||||||||| |||| |||| ||||||| ||||| |||| Sbjct: 984 ctttcttggatacgcatatcttatcactggctccttgagccttttcttaaccattctctt 1043 Query: 1075 tgctctgatccatgtgaaaatcccaaggccacaaggtgatgctgcttacctatcttggag 1134 ||||||||| || ||||||| ||||||||||| |||||||| ||||||||| |||| Sbjct: 1044 tgctctgattcacgtgaaaaatccaaggccacacggtgatgccaattacctatcatggaa 1103 Query: 1135 caggaaaaacggcaataactaagct 1159 ||| |||| |||||| ||||||| Sbjct: 1104 taggccaaacagcaatagctaagct 1128
>dbj|AK067718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119K21, full insert sequence Length = 1416 Score = 842 bits (425), Expect = 0.0 Identities = 846/985 (85%), Gaps = 1/985 (0%) Strand = Plus / Plus Query: 175 ccggcgagatcgggagtattctataaattcacccagcaggatcttccagcttggaaaccg 234 ||||||||||||||||| ||||||| ||||| |||||| | || ||||||||||| ||| Sbjct: 146 ccggcgagatcgggagtgttctataggttcactcagcagaacctcccagcttggaagccg 205 Query: 235 gcaatgacaccaggatacgtgatagccattttcttggtaattgggattatttttgtaccg 294 |||||||||||||||| |||||| | ||||||||| | || || ||| |||||| || Sbjct: 206 gcaatgacaccaggatgtgtgataactattttcttgatgatcggagttacttttgttcct 265 Query: 295 gtcggactaatttgccttcaagcttcaaacagagttgcagaagttgttcaccgctatgat 354 || || || |||||||||| |||||||| ||||||||| ||| |||||| |||||| Sbjct: 266 gttgggcttgtttgccttcatgcttcaaatcatgttgcagaaattgctcaccgttatgat 325 Query: 355 attgattgtctacctaatgcttacagaagtaataagcaggcttatatcaaagacagctca 414 ||||||||| ||||||||||||||| ||| |||| |||||| ||||| ||||| ||||| Sbjct: 326 attgattgtgtacctaatgcttacaaaagaaataggcaggcgtatattaaagatagctcg 385 Query: 415 atttcaaagaagtgtattcagaaagtgaaggttcaataccatatgaaagctccaatttat 474 ||||||||||| || | ||| ||||||||||| |||||| ||||| ||| ||||||||| Sbjct: 386 atttcaaagaactgcactcaagaagtgaaggttaaataccttatgagagcaccaatttat 445 Query: 475 gtgtattatgaactcgacaactactaccagaatcatcgtaggtatatcaaaagtagaagc 534 |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| Sbjct: 446 gtgtattatgaactcgacaacttctaccagaatcatcgcaggtatgtcaaaagtagaagt 505 Query: 535 gacaaacaactacgctatgggctgaagtacactgatagctcatgcagtccaatagaaagg 594 || || |||||||||||||||| ||||||||| |||| ||||| ||| || |||||| Sbjct: 506 gataagcaactacgctatgggcagaagtacacacatagttcatgtgatcctattgaaagg 565 Query: 595 agcaacggccttccaattgttccctgcggattgattgcctggagcttgttcaatgatact 654 | | ||||||||||||||||| || || |||||||||||||||||||||||||| ||| Sbjct: 566 aatgatggccttccaattgttccatgtggcttgattgcctggagcttgttcaatgacact 625 Query: 655 tatgactttacccgtggatccatgggaataatggttgataggaaaaatatttcatggaga 714 |||| |||||| ||||||||| || ||||| ||| | ||||| ||||||||||||| | Sbjct: 626 tatggatttacctgtggatccacggaaataaaggtcaacaggaagaatatttcatggaaa 685 Query: 715 agtgatcgggaacataagtatggcaaggatgtctatcctttcaactttcagaatggatcc 774 ||||| ||||| ||||||| |||||||||||| |||||||| |||||||||||||||||| Sbjct: 686 agtgaccgggagcataagtttggcaaggatgtatatccttttaactttcagaatggatcc 745 Query: 775 ttgattggaggagggaagcttgaccctgatataccactaagcaatcaggaagatcttatt 834 || ||||| ||||| || |||||||||| | ||||||| | | | |||||||||||||| Sbjct: 746 ttaattgggggaggaaaacttgaccctgctttaccactgaaccagcaggaagatcttata 805 Query: 835 gtgtggatgcgcgcagctgctcttccccagttttcgaaagctgtatggtgtcattgaaga 894 ||||||||||| | |||||||||||||| ||| |||||||| ||||||||||||||||| Sbjct: 806 gtgtggatgcgtacggctgctcttccccaattt-cgaaagctctatggtgtcattgaaga 864 Query: 895 ggatatacaagctgacgaaatcattaccatgcacataacaaacaattacaatacctacag 954 |||| |||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 865 ggatctacaggctgatgaaatcattacgatgcacatagcaaacaattacaatacctacag 924 Query: 955 ttttggtggaaagaaaagcctggttcttacaacatcaacctggctaggtggcaagaatga 1014 |||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 925 ttttggcggcaagaaaagcctaattcttacaacatcaacctggctaggtggcaagaatga 984 Query: 1015 cttccttggatatgcgtaccttatcactggttcctcgagcattttcttgtccattgtctt 1074 ||| |||||||| || || ||||||||||| |||| |||| ||||||| ||||| |||| Sbjct: 985 ctttcttggatacgcatatcttatcactggctccttgagccttttcttaaccattctctt 1044 Query: 1075 tgctctgatccatgtgaaaatcccaaggccacaaggtgatgctgcttacctatcttggag 1134 ||||||||| || ||||||| ||||||||||| |||||||| ||||||||| |||| Sbjct: 1045 tgctctgattcacgtgaaaaatccaaggccacacggtgatgccaattacctatcatggaa 1104 Query: 1135 caggaaaaacggcaataactaagct 1159 ||| |||| |||||| ||||||| Sbjct: 1105 taggccaaacagcaatagctaagct 1129
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 315 bits (159), Expect = 3e-82 Identities = 247/275 (89%), Gaps = 1/275 (0%) Strand = Plus / Plus Query: 820 caggaagatcttattgtgtggatgcgcgcagctgctcttccccagttttcgaaagctgta 879 |||||||||||||| ||||||||||| | |||||||||||||| ||| |||||||| || Sbjct: 30860 caggaagatcttatagtgtggatgcgtacggctgctcttccccaattt-cgaaagctcta 30918 Query: 880 tggtgtcattgaagaggatatacaagctgacgaaatcattaccatgcacataacaaacaa 939 ||||||||||||||||||| |||| ||||| ||||||||||| ||||||||| ||||||| Sbjct: 30919 tggtgtcattgaagaggatctacaggctgatgaaatcattacgatgcacatagcaaacaa 30978 Query: 940 ttacaatacctacagttttggtggaaagaaaagcctggttcttacaacatcaacctggct 999 ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct: 30979 ttacaatacctacagttttggcggcaagaaaagcctaattcttacaacatcaacctggct 31038 Query: 1000 aggtggcaagaatgacttccttggatatgcgtaccttatcactggttcctcgagcatttt 1059 |||||||||||||||||| |||||||| || || ||||||||||| |||| |||| |||| Sbjct: 31039 aggtggcaagaatgactttcttggatacgcatatcttatcactggctccttgagcctttt 31098 Query: 1060 cttgtccattgtctttgctctgatccatgtgaaaa 1094 ||| ||||| ||||||||||||| || ||||||| Sbjct: 31099 cttaaccattctctttgctctgattcacgtgaaaa 31133 Score = 248 bits (125), Expect = 5e-62 Identities = 248/289 (85%) Strand = Plus / Plus Query: 514 aggtatatcaaaagtagaagcgacaaacaactacgctatgggctgaagtacactgatagc 573 |||||| ||||||||||||| || || |||||||||||||||| ||||||||| |||| Sbjct: 30457 aggtatgtcaaaagtagaagtgataagcaactacgctatgggcagaagtacacacatagt 30516 Query: 574 tcatgcagtccaatagaaaggagcaacggccttccaattgttccctgcggattgattgcc 633 ||||| ||| || ||||||| | ||||||||||||||||| || || ||||||||| Sbjct: 30517 tcatgtgatcctattgaaaggaatgatggccttccaattgttccatgtggcttgattgcc 30576 Query: 634 tggagcttgttcaatgatacttatgactttacccgtggatccatgggaataatggttgat 693 ||||||||||||||||| ||||||| |||||| ||||||||| || ||||| ||| | Sbjct: 30577 tggagcttgttcaatgacacttatggatttacctgtggatccacggaaataaaggtcaac 30636 Query: 694 aggaaaaatatttcatggagaagtgatcgggaacataagtatggcaaggatgtctatcct 753 ||||| ||||||||||||| |||||| ||||| ||||||| |||||||||||| |||||| Sbjct: 30637 aggaagaatatttcatggaaaagtgaccgggagcataagtttggcaaggatgtatatcct 30696 Query: 754 ttcaactttcagaatggatccttgattggaggagggaagcttgaccctg 802 || |||||||||||||||||||| ||||| ||||| || |||||||||| Sbjct: 30697 tttaactttcagaatggatccttaattgggggaggaaaacttgaccctg 30745 Score = 109 bits (55), Expect = 3e-20 Identities = 103/119 (86%) Strand = Plus / Plus Query: 328 gttgcagaagttgttcaccgctatgatattgattgtctacctaatgcttacagaagtaat 387 ||||||||| ||| |||||| ||||||||||||||| ||||||||||||||| ||| ||| Sbjct: 29973 gttgcagaaattgctcaccgttatgatattgattgtgtacctaatgcttacaaaagaaat 30032 Query: 388 aagcaggcttatatcaaagacagctcaatttcaaagaagtgtattcagaaagtgaaggt 446 | |||||| ||||| ||||| ||||| ||||||||||| || | ||| |||||||||| Sbjct: 30033 aggcaggcgtatattaaagatagctcgatttcaaagaactgcactcaagaagtgaaggt 30091 Score = 101 bits (51), Expect = 7e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 443 aggttcaataccatatgaaagctccaatttatgtgtattatgaactcgacaactactacc 502 ||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||| Sbjct: 30261 aggttaaataccttatgagagcaccaatttatgtgtattatgaactcgacaacttctacc 30320 Query: 503 agaatcatcgtaggt 517 |||||||||| |||| Sbjct: 30321 agaatcatcgcaggt 30335 Score = 60.0 bits (30), Expect = 3e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 193 ttctataaattcacccagcaggatcttccagcttggaaaccggcaatgacaccaggat 250 ||||||| ||||| |||||| | || ||||||||||| ||||||||||||||||||| Sbjct: 29650 ttctataggttcactcagcagaacctcccagcttggaagccggcaatgacaccaggat 29707
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 315 bits (159), Expect = 3e-82 Identities = 247/275 (89%), Gaps = 1/275 (0%) Strand = Plus / Plus Query: 820 caggaagatcttattgtgtggatgcgcgcagctgctcttccccagttttcgaaagctgta 879 |||||||||||||| ||||||||||| | |||||||||||||| ||| |||||||| || Sbjct: 32387603 caggaagatcttatagtgtggatgcgtacggctgctcttccccaattt-cgaaagctcta 32387661 Query: 880 tggtgtcattgaagaggatatacaagctgacgaaatcattaccatgcacataacaaacaa 939 ||||||||||||||||||| |||| ||||| ||||||||||| ||||||||| ||||||| Sbjct: 32387662 tggtgtcattgaagaggatctacaggctgatgaaatcattacgatgcacatagcaaacaa 32387721 Query: 940 ttacaatacctacagttttggtggaaagaaaagcctggttcttacaacatcaacctggct 999 ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct: 32387722 ttacaatacctacagttttggcggcaagaaaagcctaattcttacaacatcaacctggct 32387781 Query: 1000 aggtggcaagaatgacttccttggatatgcgtaccttatcactggttcctcgagcatttt 1059 |||||||||||||||||| |||||||| || || ||||||||||| |||| |||| |||| Sbjct: 32387782 aggtggcaagaatgactttcttggatacgcatatcttatcactggctccttgagcctttt 32387841 Query: 1060 cttgtccattgtctttgctctgatccatgtgaaaa 1094 ||| ||||| ||||||||||||| || ||||||| Sbjct: 32387842 cttaaccattctctttgctctgattcacgtgaaaa 32387876 Score = 248 bits (125), Expect = 5e-62 Identities = 248/289 (85%) Strand = Plus / Plus Query: 514 aggtatatcaaaagtagaagcgacaaacaactacgctatgggctgaagtacactgatagc 573 |||||| ||||||||||||| || || |||||||||||||||| ||||||||| |||| Sbjct: 32387200 aggtatgtcaaaagtagaagtgataagcaactacgctatgggcagaagtacacacatagt 32387259 Query: 574 tcatgcagtccaatagaaaggagcaacggccttccaattgttccctgcggattgattgcc 633 ||||| ||| || ||||||| | ||||||||||||||||| || || ||||||||| Sbjct: 32387260 tcatgtgatcctattgaaaggaatgatggccttccaattgttccatgtggcttgattgcc 32387319 Query: 634 tggagcttgttcaatgatacttatgactttacccgtggatccatgggaataatggttgat 693 ||||||||||||||||| ||||||| |||||| ||||||||| || ||||| ||| | Sbjct: 32387320 tggagcttgttcaatgacacttatggatttacctgtggatccacggaaataaaggtcaac 32387379 Query: 694 aggaaaaatatttcatggagaagtgatcgggaacataagtatggcaaggatgtctatcct 753 ||||| ||||||||||||| |||||| ||||| ||||||| |||||||||||| |||||| Sbjct: 32387380 aggaagaatatttcatggaaaagtgaccgggagcataagtttggcaaggatgtatatcct 32387439 Query: 754 ttcaactttcagaatggatccttgattggaggagggaagcttgaccctg 802 || |||||||||||||||||||| ||||| ||||| || |||||||||| Sbjct: 32387440 tttaactttcagaatggatccttaattgggggaggaaaacttgaccctg 32387488 Score = 109 bits (55), Expect = 3e-20 Identities = 103/119 (86%) Strand = Plus / Plus Query: 328 gttgcagaagttgttcaccgctatgatattgattgtctacctaatgcttacagaagtaat 387 ||||||||| ||| |||||| ||||||||||||||| ||||||||||||||| ||| ||| Sbjct: 32386716 gttgcagaaattgctcaccgttatgatattgattgtgtacctaatgcttacaaaagaaat 32386775 Query: 388 aagcaggcttatatcaaagacagctcaatttcaaagaagtgtattcagaaagtgaaggt 446 | |||||| ||||| ||||| ||||| ||||||||||| || | ||| |||||||||| Sbjct: 32386776 aggcaggcgtatattaaagatagctcgatttcaaagaactgcactcaagaagtgaaggt 32386834 Score = 101 bits (51), Expect = 7e-18 Identities = 69/75 (92%) Strand = Plus / Plus Query: 443 aggttcaataccatatgaaagctccaatttatgtgtattatgaactcgacaactactacc 502 ||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||| Sbjct: 32387004 aggttaaataccttatgagagcaccaatttatgtgtattatgaactcgacaacttctacc 32387063 Query: 503 agaatcatcgtaggt 517 |||||||||| |||| Sbjct: 32387064 agaatcatcgcaggt 32387078 Score = 60.0 bits (30), Expect = 3e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 193 ttctataaattcacccagcaggatcttccagcttggaaaccggcaatgacaccaggat 250 ||||||| ||||| |||||| | || ||||||||||| ||||||||||||||||||| Sbjct: 32386393 ttctataggttcactcagcagaacctcccagcttggaagccggcaatgacaccaggat 32386450 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 628 attgcctggagcttgttcaatgatac 653 ||||| |||||||||||||||||||| Sbjct: 1084432 attgcttggagcttgttcaatgatac 1084407
>gb|BT018590.1| Zea mays clone EL01N0447C10.d mRNA sequence Length = 1584 Score = 167 bits (84), Expect = 2e-37 Identities = 238/288 (82%), Gaps = 1/288 (0%) Strand = Plus / Plus Query: 607 ccaattgttccctgcggattgattgcctggagcttgttcaatgatacttatgactttacc 666 ||||||||||||||||| ||| ||||||||||||| ||||||||||| |||| ||||| Sbjct: 631 ccaattgttccctgcggcttgcttgcctggagcttattcaatgatacatatggttttact 690 Query: 667 cgtggatccatgggaataatggttgataggaaaaatatttcatggagaagtgatcgggaa 726 ||||| |||| || ||||| ||| | |||||||| |||||||||| || || ||||| Sbjct: 691 cgtgggtccaaggaaataaaggtcaacaggaaaaacatttcatggaagagcgaccgggag 750 Query: 727 cataagtatggcaaggatgtctatcctttcaactttcagaatggatccttgattggagga 786 ||||||| |||||| |||| | ||||| |||||||||||| ||| ||||||||||||| Sbjct: 751 cataagtttggcaaacatgtgtttccttccaactttcagaacggaaccttgattggaggg 810 Query: 787 gggaagcttgaccctgatataccactaagcaatcaggaagatcttattgtgtggatgcgc 846 ||||| || |||||| | | ||||| || | |||||||| ||||||||||||||| | Sbjct: 811 gggaaactcgaccctactgtcccactgagtgaacaggaagaccttattgtgtggatgagg 870 Query: 847 gcagctgctcttccccagttttcgaaagctgtatggtgtcattgaaga 894 || | |||| |||||| ||||||||||| |||||||| |||||||| Sbjct: 871 acatccgctc-tccccaaatttcgaaagctctatggtgtgattgaaga 917 Score = 109 bits (55), Expect = 3e-20 Identities = 163/199 (81%) Strand = Plus / Plus Query: 344 accgctatgatattgattgtctacctaatgcttacagaagtaataagcaggcttatatca 403 ||||||||||| |||| ||| | ||| ||||||||||| | |||| ||| |||||||| | Sbjct: 366 accgctatgatgttgactgtgtgcctgatgcttacagaggaaataggcaagcttatatta 425 Query: 404 aagacagctcaatttcaaagaagtgtattcagaaagtgaaggttcaataccatatgaaag 463 | |||||||| ||||| ||||| |||| || | ||| |||||||| | | |||| || Sbjct: 426 aggacagctcgatttctaagaactgtactctggaagcgaaggttctggaatacatgagag 485 Query: 464 ctccaatttatgtgtattatgaactcgacaactactaccagaatcatcgtaggtatatca 523 | ||||||||||| ||||||||||| || || | ||| |||||||| || |||||| ||| Sbjct: 486 caccaatttatgtttattatgaacttgagaatttctatcagaatcaccgcaggtatgtca 545 Query: 524 aaagtagaagcgacaaaca 542 ||||||||||||| ||||| Sbjct: 546 aaagtagaagcgataaaca 564 Score = 103 bits (52), Expect = 2e-18 Identities = 181/224 (80%) Strand = Plus / Plus Query: 934 aaacaattacaatacctacagttttggtggaaagaaaagcctggttcttacaacatcaac 993 |||||||||||| ||||||| ||||||||||||||| ||| | || || | || | | Sbjct: 957 aaacaattacaacacctacacttttggtggaaagaagagcatagtcctgtcgactgcgtc 1016 Query: 994 ctggctaggtggcaagaatgacttccttggatatgcgtaccttatcactggttcctcgag 1053 ||||||||| |||||||| |||||||||||| | || || || |||||||||| | ||| Sbjct: 1017 ctggctaggcggcaagaacgacttccttggacacgcttatattgtcactggttcgttgag 1076 Query: 1054 cattttcttgtccattgtctttgctctgatccatgtgaaaatcccaaggccacaaggtga 1113 ||| || | || ||| |||||||||||||||||||||| ||||||||| |||||||| Sbjct: 1077 catcatcatatcgattctctttgctctgatccatgtgaagtacccaaggccgcaaggtga 1136 Query: 1114 tgctgcttacctatcttggagcaggaaaaacggcaataactaag 1157 | || |||||| |||| |||||||||| |||||| ||||| Sbjct: 1137 ccccaattgcctatcctggaacaggaaaaacagcaatagctaag 1180 Score = 52.0 bits (26), Expect = 0.006 Identities = 50/58 (86%) Strand = Plus / Plus Query: 193 ttctataaattcacccagcaggatcttccagcttggaaaccggcaatgacaccaggat 250 ||||||| |||||||||||| | || ||||||||||| || ||||||||||| |||| Sbjct: 215 ttctataggttcacccagcagaacctcccagcttggaagccagcaatgacacctggat 272
>gb|AC182660.2| Populus trichocarpa clone Pop1-125N19, complete sequence Length = 99621 Score = 54.0 bits (27), Expect = 0.002 Identities = 45/51 (88%) Strand = Plus / Plus Query: 469 atttatgtgtattatgaactcgacaactactaccagaatcatcgtaggtat 519 |||||||| || ||| | || ||||||| |||||||||||||||||||||| Sbjct: 70273 atttatgtttactatcagcttgacaacttctaccagaatcatcgtaggtat 70323
>ref|NM_101502.2| Arabidopsis thaliana unknown protein (AT1G16360) mRNA, complete cds Length = 1011 Score = 46.1 bits (23), Expect = 0.38 Identities = 29/31 (93%) Strand = Plus / Plus Query: 629 ttgcctggagcttgttcaatgatacttatga 659 |||| ||||| |||||||||||||||||||| Sbjct: 482 ttgcttggagtttgttcaatgatacttatga 512
>dbj|AK097101.1| Homo sapiens cDNA FLJ39782 fis, clone SPLEN2002175 Length = 3475 Score = 46.1 bits (23), Expect = 0.38 Identities = 23/23 (100%) Strand = Plus / Minus Query: 6 gcagcatttctgcttcttcttct 28 ||||||||||||||||||||||| Sbjct: 199 gcagcatttctgcttcttcttct 177
>emb|AL360215.15| Human DNA sequence from clone RP11-535D18 on chromosome 6 Contains a CpG island, complete sequence Length = 106582 Score = 46.1 bits (23), Expect = 0.38 Identities = 23/23 (100%) Strand = Plus / Plus Query: 6 gcagcatttctgcttcttcttct 28 ||||||||||||||||||||||| Sbjct: 50035 gcagcatttctgcttcttcttct 50057
>emb|AL139352.16| Human DNA sequence from clone RP11-445H22 on chromosome 20 Contains the 5' end of the ADA gene for adenosine deaminase, a novel gene, the 3' end of a novel gene, the WISP2 gene for WNT1 inducible signaling pathway protein 2 and a CpG island, complete sequence Length = 107260 Score = 46.1 bits (23), Expect = 0.38 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1095 tcccaaggccacaaggtgatgct 1117 ||||||||||||||||||||||| Sbjct: 18760 tcccaaggccacaaggtgatgct 18738
>dbj|AK175330.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-77-H08 Length = 1048 Score = 46.1 bits (23), Expect = 0.38 Identities = 29/31 (93%) Strand = Plus / Plus Query: 629 ttgcctggagcttgttcaatgatacttatga 659 |||| ||||| |||||||||||||||||||| Sbjct: 316 ttgcttggagtttgttcaatgatacttatga 346
>gb|AY106322.1| Zea mays PCO093315 mRNA sequence Length = 1116 Score = 46.1 bits (23), Expect = 0.38 Identities = 41/47 (87%) Strand = Plus / Plus Query: 607 ccaattgttccctgcggattgattgcctggagcttgttcaatgatac 653 ||||||||||| ||||| | ||||| ||||||||||| |||||||| Sbjct: 162 ccaattgttccttgcggcctcattgcttggagcttgtttaatgatac 208
>gb|AC006341.2|F3O9 Arabidopsis thaliana chromosome 1 BAC F3O9 sequence, complete sequence Length = 114498 Score = 46.1 bits (23), Expect = 0.38 Identities = 29/31 (93%) Strand = Plus / Minus Query: 629 ttgcctggagcttgttcaatgatacttatga 659 |||| ||||| |||||||||||||||||||| Sbjct: 49287 ttgcttggagtttgttcaatgatacttatga 49257
>gb|M13792.1|HUMADAG Human adenosine deaminase (ADA) gene, complete cds Length = 36741 Score = 46.1 bits (23), Expect = 0.38 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1095 tcccaaggccacaaggtgatgct 1117 ||||||||||||||||||||||| Sbjct: 6177 tcccaaggccacaaggtgatgct 6199
>ref|NM_001055320.1| Oryza sativa (japonica cultivar-group) Os03g0120100 (Os03g0120100) mRNA, complete cds Length = 1436 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 628 attgcctggagcttgttcaatgatac 653 ||||| |||||||||||||||||||| Sbjct: 651 attgcttggagcttgttcaatgatac 676
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 5 ggcagcatttctgcttcttctt 26 |||||||||||||||||||||| Sbjct: 13031667 ggcagcatttctgcttcttctt 13031688
>gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein gene, exons 1 through 64 and complete cds Length = 153745 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 954 gttttggtggaaagaaaagcct 975 |||||||||||||||||||||| Sbjct: 30208 gttttggtggaaagaaaagcct 30187
>gb|AC023711.5| Drosophila melanogaster X BAC RP98-6C4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174157 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 5 ggcagcatttctgcttcttctt 26 |||||||||||||||||||||| Sbjct: 124975 ggcagcatttctgcttcttctt 124996
>gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167926 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 5 ggcagcatttctgcttcttctt 26 |||||||||||||||||||||| Sbjct: 154389 ggcagcatttctgcttcttctt 154410
>dbj|AB185449.1| Lotus japonicus Lj-CDC50 like 1 mRNA for hypothetical protein, complete cds Length = 1458 Score = 44.1 bits (22), Expect = 1.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 994 ctggctaggtggcaagaatgacttccttgg 1023 |||||| ||||| ||||||||||||||||| Sbjct: 1052 ctggcttggtgggaagaatgacttccttgg 1081
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11, complete sequence Length = 126827 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 628 attgcctggagcttgttcaatgatac 653 ||||| |||||||||||||||||||| Sbjct: 104649 attgcttggagcttgttcaatgatac 104624
>dbj|AK110743.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-F10, full insert sequence Length = 1434 Score = 44.1 bits (22), Expect = 1.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 628 attgcctggagcttgttcaatgatac 653 ||||| |||||||||||||||||||| Sbjct: 649 attgcttggagcttgttcaatgatac 674
>gb|AY261364.1| African swine fever virus isolate Tengani 62, complete genome Length = 185689 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1113 atgctgcttacctatcttgga 1133 ||||||||||||||||||||| Sbjct: 102062 atgctgcttacctatcttgga 102042
>gb|AC092143.4| Homo sapiens chromosome 16 clone RP11-566K11, complete sequence Length = 146534 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 ccgcaggctccgcaccgcgcg 166 ||||||||||||||||||||| Sbjct: 50291 ccgcaggctccgcaccgcgcg 50271
>gb|AF263461.1|AF263461 Homo sapiens melanocortin 1 receptor (MC1R) gene, promoter region and complete cds Length = 13111 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 ccgcaggctccgcaccgcgcg 166 ||||||||||||||||||||| Sbjct: 13012 ccgcaggctccgcaccgcgcg 12992
>ref|XM_952816.1| Neurospora crassa OR74A hypothetical protein (NCU10063.1) partial mRNA Length = 1617 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 catttctgcttcttcttctcc 30 ||||||||||||||||||||| Sbjct: 1476 catttctgcttcttcttctcc 1456
>emb|AL672003.6| Mouse DNA sequence from clone RP23-285G5 on chromosome X, complete sequence Length = 221912 Score = 42.1 bits (21), Expect = 5.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1421 tataaaactgatatatgtgtgtata 1445 |||||||||||||||| |||||||| Sbjct: 77779 tataaaactgatatatatgtgtata 77803
>emb|AL669982.10| Mouse DNA sequence from clone RP23-297N24 on chromosome 4, complete sequence Length = 240125 Score = 42.1 bits (21), Expect = 5.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 754 ttcaactttcagaatggatcc 774 ||||||||||||||||||||| Sbjct: 126234 ttcaactttcagaatggatcc 126214 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 284,816,649 Number of extensions: 15748748 Number of successful extensions: 324917 Number of sequences better than 10.0: 28 Number of HSP's gapped: 324905 Number of HSP's successfully gapped: 42 Length of query: 1559 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1536 Effective length of database: 18,503,978,556 Effective search space: 28422111062016 Effective search space used: 28422111062016 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
