ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf21g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q6T4R5:NHS_HUMAN Nance-Horan syndrome protein - Homo sapiens (Hu... 32 1.6
2P09603:CSF1_HUMAN Macrophage colony-stimulating factor 1 precurs... 31 2.7
3Q98987:NEUM_SERCA Neuromodulin - Serinus canaria (Canary) 31 2.7
4Q8PK58:RLUB_XANAC Ribosomal large subunit pseudouridine synthase... 31 3.5
5Q3TYD6:LMTK2_MOUSE Serine/threonine-protein kinase LMTK2 precurs... 31 3.6
6Q7SCN0:FKBP4_NEUCR FK506-binding protein 4 - Neurospora crassa 30 4.6
7Q6P5B0:RRP12_MOUSE RRP12-like protein - Mus musculus (Mouse) 30 6.0
8O60732:MAGC1_HUMAN Melanoma-associated antigen C1 - Homo sapiens... 30 6.1
9Q6IN36:WIPF1_RAT WAS/WASL-interacting protein family member 1 - ... 30 7.8
10Q8K1I7:WIPF1_MOUSE WAS/WASL-interacting protein family member 1 ... 30 7.8
11Q8XWQ8:AMPA_RALSO Probable cytosol aminopeptidase - Ralstonia so... 30 7.8
12Q9NRK6:ABCBA_HUMAN ATP-binding cassette sub-family B member 10, ... 30 7.8
13Q6ZQ03:FNBP4_MOUSE Formin-binding protein 4 - Mus musculus (Mouse) 30 7.9

>Q6T4R5:NHS_HUMAN Nance-Horan syndrome protein - Homo sapiens (Human)|
          Length = 1630
 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 151 MASPATPTKSTGAQEEAAARQSLIGISQSSPAAGEALSA 267
           + +PA  T+    +   A  +S  GI +++PAAGEA SA
Sbjct: 74  LPAPADQTQPPHGEASVAGEESTAGIPEAAPAAGEASSA 112



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>P09603:CSF1_HUMAN Macrophage colony-stimulating factor 1 precursor - Homo sapiens|
           (Human)
          Length = 554

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 22/55 (40%), Positives = 26/55 (47%)
 Frame = -2

Query: 392 CGHGVAWRASGDWLEMDMSIDLYLSAAPLSSCPCSVRPFGDLALRASPAAGLDWE 228
           C +  A  +S D +       LY  A P SS P SV P   LA   +P AGL WE
Sbjct: 171 CNNSFAECSSQDVVTKPDCNCLYPKAIP-SSDPASVSPHQPLAPSMAPVAGLTWE 224



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>Q98987:NEUM_SERCA Neuromodulin - Serinus canaria (Canary)|
          Length = 241

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +1

Query: 157 SPATPTKSTGAQEEAAARQSLIGISQSSPAAGEALSAKSPNGRTEHGQDDSG--AADKYR 330
           +PA+ T +   +EE  A  +       +PAA EA +A S   + E G  DS   A +K  
Sbjct: 53  APASETDAADKKEEGPAGGAAENKESEAPAATEAAAADS--AQQEEGSKDSSAPAEEKKG 110

Query: 331 SMLMSISNQSPEARQATPCPHS 396
                  ++ P  + ATP   S
Sbjct: 111 DGAADTGSEQPAPQAATPAASS 132



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>Q8PK58:RLUB_XANAC Ribosomal large subunit pseudouridine synthase B - Xanthomonas|
           axonopodis pv. citri
          Length = 550

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +3

Query: 150 YGLARDADEV---HRRPGGSRGPPVAHRDLPVQPGGG-RGP 260
           YG AR A         PGG+RGP  A+R  P  PGGG RGP
Sbjct: 481 YGAARPAGRPSGGRPGPGGNRGPASANRG-PGGPGGGARGP 520



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>Q3TYD6:LMTK2_MOUSE Serine/threonine-protein kinase LMTK2 precursor - Mus musculus|
            (Mouse)
          Length = 1471

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
 Frame = +1

Query: 136  DIYIYMASPATPTKSTG--AQEEAAARQSLIGISQSSPAAGEALSAKSPNGRTEHG--QD 303
            D+ +Y+    TPTK  G    E      S    S SSP  G  ++++S       G   D
Sbjct: 1330 DVTVYLFDQETPTKELGHCGGEAHGPGPSSPAASSSSPYLGRCMNSESSTDEEGGGFEWD 1389

Query: 304  DSGAADKYRSMLMSISNQSPE---ARQATPCPHSNAA 405
            D  + D + S   S+    P    ++  +P P + +A
Sbjct: 1390 DDFSPDPFMSKTTSLLGSKPSLQTSKYFSPPPPARSA 1426



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>Q7SCN0:FKBP4_NEUCR FK506-binding protein 4 - Neurospora crassa|
          Length = 467

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 160 PATPTKSTGAQEEAAARQSLIGISQSSPAAGEALSAKSPNGRTEHGQDDSGAADKYRS 333
           P+ P+KS  A++EAA ++ +    + S    E +    PNG+   G+  +  +D+  S
Sbjct: 98  PSDPSKSKKAKQEAAIKKLMAATQEES---DEEMEDAKPNGKKGKGKGKASESDEEES 152



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>Q6P5B0:RRP12_MOUSE RRP12-like protein - Mus musculus (Mouse)|
          Length = 1295

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
 Frame = +3

Query: 156  LARDADEVHRRPGGSR------GPPVAHRDLPVQPGGGRGPER 266
            LAR       + GG         P VAHR L  QPG GRG +R
Sbjct: 1099 LARQRSRAWLKEGGGDEPLNFLDPKVAHRVLATQPGPGRGKKR 1141



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>O60732:MAGC1_HUMAN Melanoma-associated antigen C1 - Homo sapiens (Human)|
          Length = 1142

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +1

Query: 166 TPTKSTGAQEEAAARQSLIGISQSSPAAGEALSAKSPNGRTEHGQD-----DSGAADKYR 330
           +P +   +  E    QS +  SQSSP   ++LS    +     G+D      + A+  + 
Sbjct: 78  SPLQIPQSSPEGDDTQSPLQNSQSSPEGKDSLSPLEISQSPPEGEDVQSPLQNPASSFFS 137

Query: 331 SMLMSISNQSPEARQA 378
           S L+SI   SPE+ Q+
Sbjct: 138 SALLSIFQSSPESTQS 153



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>Q6IN36:WIPF1_RAT WAS/WASL-interacting protein family member 1 - Rattus norvegicus|
           (Rat)
          Length = 487

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = -3

Query: 283 VRSATWRSGPLPPP------GWTGRSR*ATGGPRLPPGRRWTSSASRARP 152
           VR    RSGPLPPP      G T R+  AT  P+LP      S  S  RP
Sbjct: 353 VRDPPGRSGPLPPPPPINRNGSTARALPAT--PQLPSRSGMDSPRSGPRP 400



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>Q8K1I7:WIPF1_MOUSE WAS/WASL-interacting protein family member 1 - Mus musculus (Mouse)|
          Length = 493

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = -3

Query: 283 VRSATWRSGPLPPP------GWTGRSR*ATGGPRLPPGRRWTSSASRARP 152
           VR    RSGPLPPP      G T R+  AT  P+LP      S  S  RP
Sbjct: 359 VRDPPGRSGPLPPPPPINRNGSTARALPAT--PQLPSRSGMDSPRSGPRP 406



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>Q8XWQ8:AMPA_RALSO Probable cytosol aminopeptidase - Ralstonia solanacearum|
           (Pseudomonas solanacearum)
          Length = 506

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 266 ALRASPAAGLDWEIPMSDWRAAASSWAPVDFVGVAGEAIYIYISSHREQAERR 108
           AL  + AA + W +     R   ++WA +  V +  EA Y +I  H E   +R
Sbjct: 107 ALSGTKAANVTWTLTQQPARDKDAAWAVLTAVTLIREAGYRFIERHPELKSKR 159



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>Q9NRK6:ABCBA_HUMAN ATP-binding cassette sub-family B member 10, mitochondrial|
           precursor - Homo sapiens (Human)
          Length = 738

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 268 WRSGPLPPPGWTGRSR*ATGGPRLPPGRR 182
           WR GP  PPG  GR R A  G  LP  R+
Sbjct: 133 WRRGPAAPPGDKGRLRPAAAG--LPEARK 159



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>Q6ZQ03:FNBP4_MOUSE Formin-binding protein 4 - Mus musculus (Mouse)|
          Length = 1031

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = +1

Query: 145 IYMASPATPTKSTGAQE-----EAAARQSLIGISQSSPAAGEALSAKSPNGRTEHGQDDS 309
           I   SP  P  ST  ++     +  A  +    SQS+PAA  A +A SP        +DS
Sbjct: 15  ILQLSPPGPRSSTPGRDPDPDPDPEADSTAAATSQSAPAAATAAAATSPAVPASAAPEDS 74

Query: 310 GAADKYRSMLMSISNQSPEARQATPCP 390
            + D+   ++     + P   Q  P P
Sbjct: 75  PSEDEQEVVV-----EVPNVVQNPPTP 96


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 90,603,596
Number of extensions: 1902173
Number of successful extensions: 5944
Number of sequences better than 10.0: 13
Number of HSP's gapped: 5935
Number of HSP's successfully gapped: 13
Length of query: 191
Length of database: 100,686,439
Length adjustment: 107
Effective length of query: 84
Effective length of database: 71,336,874
Effective search space: 5992297416
Effective search space used: 5992297416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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