ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf21g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY968589.1| Triticum aestivum ice recrystallization inhibitio... 76 2e-10
2ref|NM_001065246.1| Oryza sativa (japonica cultivar-group) Os07g... 58 5e-05
3gb|AY968588.1| Triticum aestivum ice recrystallization inhibitio... 58 5e-05
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 5e-05
5dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 58 5e-05
6dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-05
7dbj|AK103166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-05
8dbj|AK064359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-05
9emb|AJ277399.1|LPE277399 Lolium perenne partial mRNA for ice rec... 54 8e-04
10gb|AC134470.5| Mus musculus BAC clone RP23-120K22 from chromosom... 48 0.052
11gb|AC154253.2| Mus musculus BAC clone RP24-201F24 from chromosom... 48 0.052
12gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete s... 44 0.82
13ref|XM_642571.1| Dictyostelium discoideum AX4 hypothetical prote... 44 0.82
14gb|AC093044.1| Drosophila melanogaster, chromosome 2L, region 38... 44 0.82
15gb|AC009252.9|AC009252 Drosophila melanogaster, chromosome 2L, r... 44 0.82
16ref|XM_001021511.1| Tetrahymena thermophila SB210 conserved hypo... 42 3.2
17ref|XM_634952.1| Dictyostelium discoideum AX4 putative protein s... 42 3.2
18gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, co... 42 3.2
19gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome... 42 3.2
20gb|AC161355.3| Mus musculus chromosome 1, clone RP24-149A24, com... 42 3.2
21gb|AC132600.3| Mus musculus BAC clone RP24-134A5 from chromosome... 42 3.2
22emb|CR847569.14| Zebrafish DNA sequence from clone CH211-195I21 ... 42 3.2
23emb|BX571665.6| Zebrafish DNA sequence from clone CH211-276E8 in... 42 3.2
24emb|AL512791.3|CNS07EFF Human chromosome 14 DNA sequence BAC R-4... 42 3.2
25emb|AL161662.6|CNS01RH6 Human chromosome 14 DNA sequence BAC R-4... 42 3.2
26gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster... 42 3.2

>gb|AY968589.1| Triticum aestivum ice recrystallization inhibition protein 2
            precursor, mRNA, complete cds
          Length = 1596
 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 166/206 (80%), Gaps = 7/206 (3%)
 Strand = Plus / Plus

                                                                        
Query: 443  gtaactgggaacaataatattgtatcagggagcaaccaagtcgtgtccggcgacaacaaa 502
            |||||||||| ||||||| ||||||| ||||| ||||| ||||| || ||  | ||||||
Sbjct: 1174 gtaactgggagcaataatgttgtatctgggagaaaccatgtcgtatctgggaataacaaa 1233

                                                                        
Query: 503  gtcgtaact---ggctaatgatctgccagtggattgatttcggcttccatggtgcagctc 559
            |||||||||   || || ||||||| ||||||||| ||| |  ||||   || | |||||
Sbjct: 1234 gtcgtaactggaggttagtgatctgtcagtggattaattccctcttctccggaggagctc 1293

                                                                        
Query: 560  atacgtccttgtcaaagttcaatgtggctcacaattacttggtgtgaccaatcgcg--tt 617
            ||  ||||||||| ||||||| ||| | |||||||  ||||||| | |||||||||  ||
Sbjct: 1294 at--gtccttgtccaagttcagtgtagttcacaatcccttggtggggccaatcgcgtatt 1351

                                      
Query: 618  tgcaacttcatggatatagcatccta 643
            || |||||||||| ||||| ||||||
Sbjct: 1352 tgtaacttcatgggtatagaatccta 1377



to top

>ref|NM_001065246.1| Oryza sativa (japonica cultivar-group) Os07g0107800 (Os07g0107800)
            mRNA, complete cds
          Length = 3389

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 567  cttgtcaaagttcaatgtggctcacaattacttggtg 603
            |||||||||||||| ||||||||||||| ||||||||
Sbjct: 1922 cttgtcaaagttcagtgtggctcacaatcacttggtg 1958



to top

>gb|AY968588.1| Triticum aestivum ice recrystallization inhibition protein 1
           precursor, mRNA, complete cds
          Length = 1079

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 104/129 (80%)
 Strand = Plus / Plus

                                                                       
Query: 231 aacaaccaaataccattactgggaccaacaacagtgtcagatcagggagtggcaacatta 290
           ||||||||||||| ||  |||||| |||||||| ||||||||| |||||   |||| || 
Sbjct: 594 aacaaccaaatacaatatctgggagcaacaacactgtcagatctgggagcaccaacgttg 653

                                                                       
Query: 291 tatctgggagcggcaacactgtcgtctctggggacaacaataatatttctgggagcaaca 350
           | |||||||  | |||||||||| | || ||| | ||||| ||| |  ||||||||||||
Sbjct: 654 tttctgggaatgacaacactgtcatatccgggaataacaacaatgtggctgggagcaaca 713

                    
Query: 351 acacagtca 359
           |||| ||||
Sbjct: 714 acactgtca 722



 Score = 46.1 bits (23), Expect = 0.21
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 391 caaccatgtcgtaactgggagcaacaa 417
           ||||||||||||| |||||||||||||
Sbjct: 897 caaccatgtcgtatctgggagcaacaa 923



 Score = 44.1 bits (22), Expect = 0.82
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 338 tctgggagcaacaacacagtcacctctgggagca 371
           ||||||||||||||||| ||||  ||||||||||
Sbjct: 611 tctgggagcaacaacactgtcagatctgggagca 644



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                   
Query: 567    cttgtcaaagttcaatgtggctcacaattacttggtg 603
              |||||||||||||| ||||||||||||| ||||||||
Sbjct: 425893 cttgtcaaagttcagtgtggctcacaatcacttggtg 425929



to top

>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 567   cttgtcaaagttcaatgtggctcacaattacttggtg 603
             |||||||||||||| ||||||||||||| ||||||||
Sbjct: 28057 cttgtcaaagttcagtgtggctcacaatcacttggtg 28093



to top

>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full
            insert sequence
          Length = 3392

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 567  cttgtcaaagttcaatgtggctcacaattacttggtg 603
            |||||||||||||| ||||||||||||| ||||||||
Sbjct: 1923 cttgtcaaagttcagtgtggctcacaatcacttggtg 1959



to top

>dbj|AK103166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121E13, full
            insert sequence
          Length = 2958

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 567  cttgtcaaagttcaatgtggctcacaattacttggtg 603
            |||||||||||||| ||||||||||||| ||||||||
Sbjct: 1461 cttgtcaaagttcagtgtggctcacaatcacttggtg 1497



to top

>dbj|AK064359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B08, full
           insert sequence
          Length = 2238

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 567 cttgtcaaagttcaatgtggctcacaattacttggtg 603
           |||||||||||||| ||||||||||||| ||||||||
Sbjct: 608 cttgtcaaagttcagtgtggctcacaatcacttggtg 644



to top

>emb|AJ277399.1|LPE277399 Lolium perenne partial mRNA for ice recrystallisation inhibition
           protein
          Length = 357

 Score = 54.0 bits (27), Expect = 8e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 304 caacactgtcgtctctggggacaacaataatatttctgggagcaacaacac 354
           |||||| ||| | |||||||||||||||| | | |||||||||||||||||
Sbjct: 78  caacaccgtcatatctggggacaacaatagtgtgtctgggagcaacaacac 128



to top

>gb|AC134470.5| Mus musculus BAC clone RP23-120K22 from chromosome 14, complete
             sequence
          Length = 211779

 Score = 48.1 bits (24), Expect = 0.052
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 675   tatagaactttttacataataaac 698
             ||||||||||||||||||||||||
Sbjct: 51179 tatagaactttttacataataaac 51202



to top

>gb|AC154253.2| Mus musculus BAC clone RP24-201F24 from chromosome 14, complete
             sequence
          Length = 161496

 Score = 48.1 bits (24), Expect = 0.052
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 675   tatagaactttttacataataaac 698
             ||||||||||||||||||||||||
Sbjct: 76748 tatagaactttttacataataaac 76771



to top

>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence
          Length = 23011544

 Score = 44.1 bits (22), Expect = 0.82
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 92       ataatggcgaaatgttgcctac 113
                ||||||||||||||||||||||
Sbjct: 20028954 ataatggcgaaatgttgcctac 20028933



to top

>ref|XM_642571.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0189883)
            mRNA, complete cds
          Length = 1590

 Score = 44.1 bits (22), Expect = 0.82
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 219  cactccaacaacaacaaccaaa 240
            ||||||||||||||||||||||
Sbjct: 1214 cactccaacaacaacaaccaaa 1235



to top

>gb|AC093044.1| Drosophila melanogaster, chromosome 2L, region 38A-38B, BAC clone
             BACR10H13, complete sequence
          Length = 165585

 Score = 44.1 bits (22), Expect = 0.82
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 92    ataatggcgaaatgttgcctac 113
             ||||||||||||||||||||||
Sbjct: 55367 ataatggcgaaatgttgcctac 55346



to top

>gb|AC009252.9|AC009252 Drosophila melanogaster, chromosome 2L, region 38A-38A, BAC clone
              BACR22E16, complete sequence
          Length = 164361

 Score = 44.1 bits (22), Expect = 0.82
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 92     ataatggcgaaatgttgcctac 113
              ||||||||||||||||||||||
Sbjct: 115491 ataatggcgaaatgttgcctac 115470



to top

>ref|XM_001021511.1| Tetrahymena thermophila SB210 conserved hypothetical protein
           (TTHERM_00148760) mRNA, complete cds
          Length = 1323

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 675 tatagaactttttacataataaacg 699
           ||||||||||||| |||||||||||
Sbjct: 493 tatagaactttttgcataataaacg 469



to top

>ref|XM_634952.1| Dictyostelium discoideum AX4 putative protein serine/threonine
           kinase (DDB_0216309) mRNA, complete cds
          Length = 939

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 222 tccaacaacaacaaccaaata 242
           |||||||||||||||||||||
Sbjct: 911 tccaacaacaacaaccaaata 931



to top

>gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, complete sequence
          Length = 181674

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 651    aaaataaaatttccctagaat 671
              |||||||||||||||||||||
Sbjct: 111897 aaaataaaatttccctagaat 111917



to top

>gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome 3, complete sequence
          Length = 149145

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 675   tatagaactttttacataataaacgttga 703
             ||||||||||||||||| |||||| ||||
Sbjct: 32484 tatagaactttttacattataaacattga 32512



to top

>gb|AC161355.3| Mus musculus chromosome 1, clone RP24-149A24, complete sequence
          Length = 179242

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    caacaacaacaaccaaatacc 244
              |||||||||||||||||||||
Sbjct: 119097 caacaacaacaaccaaatacc 119117



to top

>gb|AC132600.3| Mus musculus BAC clone RP24-134A5 from chromosome 3, complete sequence
          Length = 160339

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 675    tatagaactttttacataataaacgttga 703
              ||||||||||||||||| |||||| ||||
Sbjct: 150406 tatagaactttttacattataaacattga 150434



to top

>emb|CR847569.14| Zebrafish DNA sequence from clone CH211-195I21 in linkage group 22,
             complete sequence
          Length = 120175

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 570   gtcaaagttcaatgtggctca 590
             |||||||||||||||||||||
Sbjct: 18145 gtcaaagttcaatgtggctca 18125



to top

>emb|BX571665.6| Zebrafish DNA sequence from clone CH211-276E8 in linkage group 20
              Contains the 5' end of the gene for a novel protein similar
              to vertebrate ring finger protein 144 (RNF144), the gene
              for a novel radical SAM superfamily protein, the gene for a
              novel protein similar to mouse thymidylate kinase family
              LPS-inducible member (Tyki) and a CpG island, complete
              sequence
          Length = 166885

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 224    caacaacaacaaccaaataccatta 248
              ||||||||||||| |||||||||||
Sbjct: 130944 caacaacaacaactaaataccatta 130968



to top

>emb|AL512791.3|CNS07EFF Human chromosome 14 DNA sequence BAC R-471B22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178834

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   caacaacaacaaccaaatacc 244
             |||||||||||||||||||||
Sbjct: 24408 caacaacaacaaccaaatacc 24388



to top

>emb|AL161662.6|CNS01RH6 Human chromosome 14 DNA sequence BAC R-439L12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197369

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    caacaacaacaaccaaatacc 244
              |||||||||||||||||||||
Sbjct: 172394 caacaacaacaaccaaatacc 172374



to top

>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome
          Length = 1267782

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 514   ctaatgatctgccagtggatt 534
             |||||||||||||||||||||
Sbjct: 14874 ctaatgatctgccagtggatt 14894


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 161,356,000
Number of extensions: 9384306
Number of successful extensions: 188821
Number of sequences better than 10.0: 26
Number of HSP's gapped: 188819
Number of HSP's successfully gapped: 28
Length of query: 855
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 833
Effective length of database: 18,508,616,841
Effective search space: 15417677828553
Effective search space used: 15417677828553
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top