| Clone Name | FLbaf21g08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY968589.1| Triticum aestivum ice recrystallization inhibition protein 2 precursor, mRNA, complete cds Length = 1596 Score = 75.8 bits (38), Expect = 2e-10 Identities = 166/206 (80%), Gaps = 7/206 (3%) Strand = Plus / Plus Query: 443 gtaactgggaacaataatattgtatcagggagcaaccaagtcgtgtccggcgacaacaaa 502 |||||||||| ||||||| ||||||| ||||| ||||| ||||| || || | |||||| Sbjct: 1174 gtaactgggagcaataatgttgtatctgggagaaaccatgtcgtatctgggaataacaaa 1233 Query: 503 gtcgtaact---ggctaatgatctgccagtggattgatttcggcttccatggtgcagctc 559 ||||||||| || || ||||||| ||||||||| ||| | |||| || | ||||| Sbjct: 1234 gtcgtaactggaggttagtgatctgtcagtggattaattccctcttctccggaggagctc 1293 Query: 560 atacgtccttgtcaaagttcaatgtggctcacaattacttggtgtgaccaatcgcg--tt 617 || ||||||||| ||||||| ||| | ||||||| ||||||| | ||||||||| || Sbjct: 1294 at--gtccttgtccaagttcagtgtagttcacaatcccttggtggggccaatcgcgtatt 1351 Query: 618 tgcaacttcatggatatagcatccta 643 || |||||||||| ||||| |||||| Sbjct: 1352 tgtaacttcatgggtatagaatccta 1377
>ref|NM_001065246.1| Oryza sativa (japonica cultivar-group) Os07g0107800 (Os07g0107800) mRNA, complete cds Length = 3389 Score = 58.0 bits (29), Expect = 5e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 567 cttgtcaaagttcaatgtggctcacaattacttggtg 603 |||||||||||||| ||||||||||||| |||||||| Sbjct: 1922 cttgtcaaagttcagtgtggctcacaatcacttggtg 1958
>gb|AY968588.1| Triticum aestivum ice recrystallization inhibition protein 1 precursor, mRNA, complete cds Length = 1079 Score = 58.0 bits (29), Expect = 5e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 231 aacaaccaaataccattactgggaccaacaacagtgtcagatcagggagtggcaacatta 290 ||||||||||||| || |||||| |||||||| ||||||||| ||||| |||| || Sbjct: 594 aacaaccaaatacaatatctgggagcaacaacactgtcagatctgggagcaccaacgttg 653 Query: 291 tatctgggagcggcaacactgtcgtctctggggacaacaataatatttctgggagcaaca 350 | ||||||| | |||||||||| | || ||| | ||||| ||| | |||||||||||| Sbjct: 654 tttctgggaatgacaacactgtcatatccgggaataacaacaatgtggctgggagcaaca 713 Query: 351 acacagtca 359 |||| |||| Sbjct: 714 acactgtca 722 Score = 46.1 bits (23), Expect = 0.21 Identities = 26/27 (96%) Strand = Plus / Plus Query: 391 caaccatgtcgtaactgggagcaacaa 417 ||||||||||||| ||||||||||||| Sbjct: 897 caaccatgtcgtatctgggagcaacaa 923 Score = 44.1 bits (22), Expect = 0.82 Identities = 31/34 (91%) Strand = Plus / Plus Query: 338 tctgggagcaacaacacagtcacctctgggagca 371 ||||||||||||||||| |||| |||||||||| Sbjct: 611 tctgggagcaacaacactgtcagatctgggagca 644
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 58.0 bits (29), Expect = 5e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 567 cttgtcaaagttcaatgtggctcacaattacttggtg 603 |||||||||||||| ||||||||||||| |||||||| Sbjct: 425893 cttgtcaaagttcagtgtggctcacaatcacttggtg 425929
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 58.0 bits (29), Expect = 5e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 567 cttgtcaaagttcaatgtggctcacaattacttggtg 603 |||||||||||||| ||||||||||||| |||||||| Sbjct: 28057 cttgtcaaagttcagtgtggctcacaatcacttggtg 28093
>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full insert sequence Length = 3392 Score = 58.0 bits (29), Expect = 5e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 567 cttgtcaaagttcaatgtggctcacaattacttggtg 603 |||||||||||||| ||||||||||||| |||||||| Sbjct: 1923 cttgtcaaagttcagtgtggctcacaatcacttggtg 1959
>dbj|AK103166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121E13, full insert sequence Length = 2958 Score = 58.0 bits (29), Expect = 5e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 567 cttgtcaaagttcaatgtggctcacaattacttggtg 603 |||||||||||||| ||||||||||||| |||||||| Sbjct: 1461 cttgtcaaagttcagtgtggctcacaatcacttggtg 1497
>dbj|AK064359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B08, full insert sequence Length = 2238 Score = 58.0 bits (29), Expect = 5e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 567 cttgtcaaagttcaatgtggctcacaattacttggtg 603 |||||||||||||| ||||||||||||| |||||||| Sbjct: 608 cttgtcaaagttcagtgtggctcacaatcacttggtg 644
>emb|AJ277399.1|LPE277399 Lolium perenne partial mRNA for ice recrystallisation inhibition protein Length = 357 Score = 54.0 bits (27), Expect = 8e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 304 caacactgtcgtctctggggacaacaataatatttctgggagcaacaacac 354 |||||| ||| | |||||||||||||||| | | ||||||||||||||||| Sbjct: 78 caacaccgtcatatctggggacaacaatagtgtgtctgggagcaacaacac 128
>gb|AC134470.5| Mus musculus BAC clone RP23-120K22 from chromosome 14, complete sequence Length = 211779 Score = 48.1 bits (24), Expect = 0.052 Identities = 24/24 (100%) Strand = Plus / Plus Query: 675 tatagaactttttacataataaac 698 |||||||||||||||||||||||| Sbjct: 51179 tatagaactttttacataataaac 51202
>gb|AC154253.2| Mus musculus BAC clone RP24-201F24 from chromosome 14, complete sequence Length = 161496 Score = 48.1 bits (24), Expect = 0.052 Identities = 24/24 (100%) Strand = Plus / Plus Query: 675 tatagaactttttacataataaac 698 |||||||||||||||||||||||| Sbjct: 76748 tatagaactttttacataataaac 76771
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Minus Query: 92 ataatggcgaaatgttgcctac 113 |||||||||||||||||||||| Sbjct: 20028954 ataatggcgaaatgttgcctac 20028933
>ref|XM_642571.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0189883) mRNA, complete cds Length = 1590 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Plus Query: 219 cactccaacaacaacaaccaaa 240 |||||||||||||||||||||| Sbjct: 1214 cactccaacaacaacaaccaaa 1235
>gb|AC093044.1| Drosophila melanogaster, chromosome 2L, region 38A-38B, BAC clone BACR10H13, complete sequence Length = 165585 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Minus Query: 92 ataatggcgaaatgttgcctac 113 |||||||||||||||||||||| Sbjct: 55367 ataatggcgaaatgttgcctac 55346
>gb|AC009252.9|AC009252 Drosophila melanogaster, chromosome 2L, region 38A-38A, BAC clone BACR22E16, complete sequence Length = 164361 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Minus Query: 92 ataatggcgaaatgttgcctac 113 |||||||||||||||||||||| Sbjct: 115491 ataatggcgaaatgttgcctac 115470
>ref|XM_001021511.1| Tetrahymena thermophila SB210 conserved hypothetical protein (TTHERM_00148760) mRNA, complete cds Length = 1323 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 675 tatagaactttttacataataaacg 699 ||||||||||||| ||||||||||| Sbjct: 493 tatagaactttttgcataataaacg 469
>ref|XM_634952.1| Dictyostelium discoideum AX4 putative protein serine/threonine kinase (DDB_0216309) mRNA, complete cds Length = 939 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 tccaacaacaacaaccaaata 242 ||||||||||||||||||||| Sbjct: 911 tccaacaacaacaaccaaata 931
>gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, complete sequence Length = 181674 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 651 aaaataaaatttccctagaat 671 ||||||||||||||||||||| Sbjct: 111897 aaaataaaatttccctagaat 111917
>gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome 3, complete sequence Length = 149145 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 675 tatagaactttttacataataaacgttga 703 ||||||||||||||||| |||||| |||| Sbjct: 32484 tatagaactttttacattataaacattga 32512
>gb|AC161355.3| Mus musculus chromosome 1, clone RP24-149A24, complete sequence Length = 179242 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 caacaacaacaaccaaatacc 244 ||||||||||||||||||||| Sbjct: 119097 caacaacaacaaccaaatacc 119117
>gb|AC132600.3| Mus musculus BAC clone RP24-134A5 from chromosome 3, complete sequence Length = 160339 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 675 tatagaactttttacataataaacgttga 703 ||||||||||||||||| |||||| |||| Sbjct: 150406 tatagaactttttacattataaacattga 150434
>emb|CR847569.14| Zebrafish DNA sequence from clone CH211-195I21 in linkage group 22, complete sequence Length = 120175 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 gtcaaagttcaatgtggctca 590 ||||||||||||||||||||| Sbjct: 18145 gtcaaagttcaatgtggctca 18125
>emb|BX571665.6| Zebrafish DNA sequence from clone CH211-276E8 in linkage group 20 Contains the 5' end of the gene for a novel protein similar to vertebrate ring finger protein 144 (RNF144), the gene for a novel radical SAM superfamily protein, the gene for a novel protein similar to mouse thymidylate kinase family LPS-inducible member (Tyki) and a CpG island, complete sequence Length = 166885 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 224 caacaacaacaaccaaataccatta 248 ||||||||||||| ||||||||||| Sbjct: 130944 caacaacaacaactaaataccatta 130968
>emb|AL512791.3|CNS07EFF Human chromosome 14 DNA sequence BAC R-471B22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178834 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 caacaacaacaaccaaatacc 244 ||||||||||||||||||||| Sbjct: 24408 caacaacaacaaccaaatacc 24388
>emb|AL161662.6|CNS01RH6 Human chromosome 14 DNA sequence BAC R-439L12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197369 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 caacaacaacaaccaaatacc 244 ||||||||||||||||||||| Sbjct: 172394 caacaacaacaaccaaatacc 172374
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 514 ctaatgatctgccagtggatt 534 ||||||||||||||||||||| Sbjct: 14874 ctaatgatctgccagtggatt 14894 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 161,356,000 Number of extensions: 9384306 Number of successful extensions: 188821 Number of sequences better than 10.0: 26 Number of HSP's gapped: 188819 Number of HSP's successfully gapped: 28 Length of query: 855 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 833 Effective length of database: 18,508,616,841 Effective search space: 15417677828553 Effective search space used: 15417677828553 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)