ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf18a08 |
|---|---|
| Clone Library Name | barley_pub |
>Q5BK82:TRI69_RAT Tripartite motif-containing protein 69 - Rattus norvegicus (Rat)| Length = 499 Score = 33.1 bits (74), Expect = 2.5 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 4/38 (10%) Frame = -2 Query: 908 SCCWLLVSQKAAGQV---PLMQG-PQCPEHGLSLTLFA 807 +C + LV +K ++ PL++G PQCPEHG +L LF+ Sbjct: 89 NCTFNLVLEKLVEKIKRLPLLKGHPQCPEHGENLKLFS 126
>Q80X56:TRI69_MOUSE Tripartite motif-containing protein 69 - Mus musculus (Mouse)| Length = 500 Score = 33.1 bits (74), Expect = 2.5 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 4/38 (10%) Frame = -2 Query: 908 SCCWLLVSQKAAGQV---PLMQG-PQCPEHGLSLTLFA 807 +C + LV +K ++ PL++G PQCPEHG +L LF+ Sbjct: 90 NCTFNLVLEKLVEKIKKLPLLKGHPQCPEHGENLKLFS 127
>Q12PZ8:RUMA_SHEDO 23S rRNA - Shewanella denitrificans (strain OS217 / ATCC BAA-1090 /| DSM 15013) Length = 468 Score = 28.1 bits (61), Expect(2) = 2.9 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Frame = -2 Query: 1217 IIYPPHTYKQQK----YFNNTASSSKANWPSLGSQQIKP*K 1107 ++ PP Y+++ YFNN S K + +L S+QI P K Sbjct: 132 LVSPPWHYRRRARLATYFNNNDKSLKLGFRALSSKQIVPIK 172 Score = 23.5 bits (49), Expect(2) = 2.9 Identities = 18/39 (46%), Positives = 20/39 (51%) Frame = -1 Query: 1101 KSSPCVLSLTATDNFSDWVLFFAF*LMVADIHALAIFPL 985 K+S L LT DN + VL L ADI ALA F L Sbjct: 198 KASLGHLELTQADNGTFAVLRVTKVLPAADIRALASFAL 236
>P49797:RGS3_RAT Regulator of G-protein signaling 3 - Rattus norvegicus (Rat)| Length = 967 Score = 32.7 bits (73), Expect = 3.2 Identities = 21/56 (37%), Positives = 27/56 (48%) Frame = +2 Query: 80 PPKPWERAGAEGTSGPLPFKPPSGGSTSDVVEASGTAKPGETIAATERDMSANVNN 247 PP E + ++ P PPS GS S+ A T PGE AAT + SA+ N Sbjct: 571 PPAIPESSASDQNVLPSQESPPSQGSLSEKALAEQTISPGELPAATAGEPSASRPN 626
>Q2VZ24:PTH_MAGMM Peptidyl-tRNA hydrolase - Magnetospirillum magneticum (strain AMB-1| / ATCC 700264) Length = 234 Score = 32.7 bits (73), Expect = 3.2 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Frame = +2 Query: 59 RTSMAGAPPKPW-ERAGAEGTSGPLPFK---PPSGGSTSDVVEASGT 187 R + APPKP +R AE P P + PPSGGS ++ ++A+ T Sbjct: 182 RVAHLTAPPKPKKDRPAAEAAPAPAPAQVSAPPSGGSLAEALKAAMT 228
>Q9TTY2:FER_CANFA Proto-oncogene tyrosine-protein kinase FER - Canis familiaris (Dog)| Length = 823 Score = 32.7 bits (73), Expect = 3.2 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 13/64 (20%) Frame = -2 Query: 1049 GYSSSLSD*WLLTYMLWQSF---LC*PYVSIS---STAHI-RARRLSFPKHCP------M 909 G SS SD W +LW++F +C PY ++ +T + R R+S P+HCP M Sbjct: 735 GRYSSESDVWSFGILLWETFSLGVC-PYPGMTNQQATEQVERGYRISAPQHCPEDIFKIM 793 Query: 908 SCCW 897 CW Sbjct: 794 MKCW 797
>Q5RAU1:PHAR4_PONPY Phosphatase and actin regulator 4 - Pongo pygmaeus (Orangutan)| Length = 702 Score = 32.0 bits (71), Expect = 5.5 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +2 Query: 80 PPKPWERAGAEGTSGPLPFKPPSGGSTSDVVEASGTAKPGETIAATERDMSANVN---NP 250 PPK + E + G SGG+ ++ S T P T AAT + N++ +P Sbjct: 170 PPKRPLSSSHEASEGQAKDATSSGGTARFIISTSITTAPAATTAATSLAKTVNLSVTPSP 229 Query: 251 ISRPMPQRP 277 R +P P Sbjct: 230 APRTLPAAP 238
>Q8IZ21:PHAR4_HUMAN Phosphatase and actin regulator 4 - Homo sapiens (Human)| Length = 702 Score = 32.0 bits (71), Expect = 5.5 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +2 Query: 80 PPKPWERAGAEGTSGPLPFKPPSGGSTSDVVEASGTAKPGETIAATERDMSANVN---NP 250 PPK + E + G SGG+ ++ S T P T AAT + N++ +P Sbjct: 170 PPKRPLSSSHEASEGQAKDATSSGGTARFIISTSITTAPAATTAATSLAKTVNLSVTPSP 229 Query: 251 ISRPMPQRP 277 R +P P Sbjct: 230 APRTLPAAP 238
>Q9ZT17:AGP3_ARATH Classical arabinogalactan protein 3 precursor - Arabidopsis| thaliana (Mouse-ear cress) Length = 139 Score = 32.0 bits (71), Expect = 5.5 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +2 Query: 56 PRTSMAGAPPKPWERAGAEGTSGPLPFKPPSGGSTSDVVEASGTAK 193 P TS +PPKP+ A A G SGP P P+ + V +++ T K Sbjct: 79 PTTSPVASPPKPY--ALAPGPSGPTPAPAPAPRADGPVADSALTNK 122
>O43281:EFS_HUMAN Embryonal Fyn-associated substrate - Homo sapiens (Human)| Length = 561 Score = 32.0 bits (71), Expect = 5.5 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = -1 Query: 198 PGLAVPEASTTSLVLPPDGGLKGNGPD--VPSAPARSHGFGG 79 P L VPEA + S V P G KG+ D +P P R G+GG Sbjct: 308 PALPVPEAPSPSPVPSPAPGRKGSIQDRPLPPPPPRLPGYGG 349
>Q9Y2P5:S27A5_HUMAN Bile acyl-CoA synthetase - Homo sapiens (Human)| Length = 690 Score = 31.6 bits (70), Expect = 7.2 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +3 Query: 42 QNRVGLARQWQVHHQNRGNVLGLREHPVRCLSNPHLVAALVMSSKL-LVQLNLE--KPLL 212 Q R G R W+V+ GN +GL + RC + + L M S LVQ ++E +P+ Sbjct: 420 QQRFGPIRIWEVYGSTEGN-MGLVNYVGRCGALGKMSCLLRMLSPFELVQFDMEAAEPVR 478 Query: 213 LQRGTCLPM 239 +G C+P+ Sbjct: 479 DNQGFCIPV 487
>P22059:OSBP1_HUMAN Oxysterol-binding protein 1 - Homo sapiens (Human)| Length = 807 Score = 31.6 bits (70), Expect = 7.2 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +2 Query: 62 TSMAGAPPKPWERAGAEGTSGPLPFKPPSGGSTSDVVEASGTAKPG 199 T +A A P AG +GP P PP+GGS SG+A+ G Sbjct: 49 TVVAAAAGGPGPGAGGVAAAGPAP-APPTGGSGGSGAGGSGSAREG 93
>Q61127:NAB2_MOUSE NGFI-A-binding protein 2 - Mus musculus (Mouse)| Length = 525 Score = 31.6 bits (70), Expect = 7.2 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = +2 Query: 56 PRTSMAGAPPKPWERAGAEGTSGPLPFKPPSGGSTSDVVEASGTAKPG 199 PR + P+ AG E +G PF PP+GG S+ G A G Sbjct: 182 PRIWPGQSTPESDVGAGGEEEAGSPPFSPPAGGGVSEGPGVGGVAAGG 229
>Q15742:NAB2_HUMAN NGFI-A-binding protein 2 - Homo sapiens (Human)| Length = 525 Score = 31.6 bits (70), Expect = 7.2 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = +2 Query: 56 PRTSMAGAPPKPWERAGAEGTSGPLPFKPPSGGSTSDVVEASGTAKPG 199 PR + P+ AG E +G PF PP+GG + A G A G Sbjct: 182 PRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGG 229
>P16591:FER_HUMAN Proto-oncogene tyrosine-protein kinase FER - Homo sapiens (Human)| Length = 822 Score = 31.6 bits (70), Expect = 7.2 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%) Frame = -2 Query: 1049 GYSSSLSD*WLLTYMLWQSF---LC*PYVSISSTAH----IRARRLSFPKHCP------M 909 G SS SD W +LW++F +C PY +++ R R+S P+HCP M Sbjct: 735 GRYSSESDVWSFGILLWETFSLGVC-PYPGMTNQQAREQVERGYRMSAPQHCPEDISKIM 793 Query: 908 SCCW 897 CW Sbjct: 794 MKCW 797
>Q86WT6:TRI69_HUMAN Tripartite motif-containing protein 69 - Homo sapiens (Human)| Length = 500 Score = 31.2 bits (69), Expect = 9.4 Identities = 13/22 (59%), Positives = 19/22 (86%), Gaps = 1/22 (4%) Frame = -2 Query: 869 QVPLMQG-PQCPEHGLSLTLFA 807 ++PL++G PQCPEHG +L LF+ Sbjct: 105 KLPLLKGHPQCPEHGENLKLFS 126
>Q216H0:THIC_RHOPB Thiamine biosynthesis protein thiC - Rhodopseudomonas palustris| (strain BisB18) Length = 709 Score = 31.2 bits (69), Expect = 9.4 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Frame = +2 Query: 56 PRTSMAGAPPKPWERAGAEG------TSGPLPFKPPSGGSTSDVVEASGTAKP 196 P A +PP E +G G +S PLP PP GG + A G P Sbjct: 127 PAAGTANSPPPRGEGSGVGGATNTVPSSTPLPTPPPQGGREQGIAYACGPHLP 179
>Q92664:TF3A_HUMAN Transcription factor IIIA - Homo sapiens (Human)| Length = 423 Score = 31.2 bits (69), Expect = 9.4 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -3 Query: 1129 HSRLSHENQKEQPLCSFANCNRQF 1058 H HENQ++Q +CSF +C + F Sbjct: 178 HFERKHENQQKQYICSFEDCKKTF 201
>O53657:MMPL3_MYCTU Putative membrane protein mmpL3 - Mycobacterium tuberculosis| Length = 944 Score = 31.2 bits (69), Expect = 9.4 Identities = 20/71 (28%), Positives = 29/71 (40%) Frame = +2 Query: 56 PRTSMAGAPPKPWERAGAEGTSGPLPFKPPSGGSTSDVVEASGTAKPGETIAATERDMSA 235 PR + + P E T+ P PSG ST+ + S T P +AA R + + Sbjct: 796 PRPARSSPASSPELTPALEATAAPAA---PSGASTTRMQIGSSTEPPTTRLAAAGRSVQS 852 Query: 236 NVNNPISRPMP 268 + P P P Sbjct: 853 PASTPPPTPTP 863
>P41052:MLTB_ECOLI Membrane-bound lytic murein transglycosylase B precursor -| Escherichia coli Length = 361 Score = 31.2 bits (69), Expect = 9.4 Identities = 21/82 (25%), Positives = 34/82 (41%) Frame = +2 Query: 596 SFGPPAAPPGFWVSFLRVMHGAVSFFGRVAFLVEQNTQAFYLFITAMLQLFDRSGMLYGE 775 S PP+ P G W+ + R F+ N Q +F +R+ +YG Sbjct: 103 SVKPPSGPNGAWLRY------------RKKFITPDNVQNGVVFWNQYEDALNRAWQVYGV 150 Query: 776 LARFVLRLLGVRTKSKKGRVQG 841 ++ ++GV T + GRV G Sbjct: 151 PPEIIVGIIGVET--RWGRVMG 170
>Q7S8B6:EXO84_NEUCR Exocyst complex component EXO84 - Neurospora crassa| Length = 621 Score = 31.2 bits (69), Expect = 9.4 Identities = 25/76 (32%), Positives = 31/76 (40%) Frame = +2 Query: 50 SRPRTSMAGAPPKPWERAGAEGTSGPLPFKPPSGGSTSDVVEASGTAKPGETIAATERDM 229 S P G P P E A+ P PP GG TSD+V+ + + G T+ D Sbjct: 29 SAPIPQDNGMPQPPPEATMADEPRMTRPRPPPPGGKTSDLVKKRYSTRFGN--MPTDFD- 85 Query: 230 SANVNNPISRPMPQRP 277 P S PMP P Sbjct: 86 ------PSSNPMPALP 95
>Q96H22:CENPN_HUMAN Centromere protein N - Homo sapiens (Human)| Length = 339 Score = 31.2 bits (69), Expect = 9.4 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +3 Query: 93 GNVLGLREHPVRCL---SNPHLVAALVMSSKLLVQLNLEKPLLLQRGTCLP 236 G++L RE P+RCL S+PHL+ AL K L + L TC+P Sbjct: 281 GSILAEREEPLRCLIKFSSPHLLEAL----KSLAPAGIADAPLSPLLTCIP 327 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 213,621,841 Number of extensions: 4820650 Number of successful extensions: 15112 Number of sequences better than 10.0: 22 Number of HSP's gapped: 15065 Number of HSP's successfully gapped: 23 Length of query: 418 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 302 Effective length of database: 68,868,219 Effective search space: 20798202138 Effective search space used: 20798202138 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
