ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf21c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Os03g0675700:Os03g0675700 44 4e-05
2Os06g0165500:Os06g0165500 29 1.1
3Os03g0436600:Os03g0436600 28 3.2
4Os11g0220200:Os11g0220200 28 3.2
5AK111000:Os03g0325600 27 5.4
6AK063262:Os03g0325600 27 5.4
7Os02g0131700:Os02g0131700 26 9.3

>Os03g0675700:Os03g0675700 |
          Length = 174
 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 20/29 (68%), Positives = 20/29 (68%)
 Frame = +2

Query: 47  LSFPLXXXXXXXXXISGNVIFGPPLQKYW 133
           LSFPL         ISGNVIFGPPLQKYW
Sbjct: 126 LSFPLVAGAVVIGVISGNVIFGPPLQKYW 154



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>Os06g0165500:Os06g0165500 |
          Length = 805

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 94  WECDIWAAAPEVLGREATARSGGKRRPNWVDLTETSSCFAESM 222
           W  + W   PE+     T  S   RR N+ +L + + CF E +
Sbjct: 484 WAANKWGRRPEIQDEGYTIISSQFRRFNYKELEKATDCFQEML 526



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>Os03g0436600:Os03g0436600 |
          Length = 309

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 185 STQFGLLLPPDLAVASLPSTSGAAA 111
           +T F LLL  +L   +LPST GAAA
Sbjct: 146 ATVFNLLLEGNLLTGTLPSTFGAAA 170



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>Os11g0220200:Os11g0220200 |
          Length = 60

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 115 AAPEVLGREATARSGGKRRPNW 180
           AA     R ATAR GG+RR  W
Sbjct: 35  AASRTTARAATARRGGRRRRRW 56



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>AK111000:Os03g0325600 |
          Length = 356

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 221 IDSAKHEDVSVKSTQFGLLLPPDLAVASLPSTSGAAAQISHSQ 93
           +DS   +D+   S Q G +  P  + AS P+T  +AA  +  Q
Sbjct: 214 VDSGGSDDLFAISRQMGFVGSPRCSPASSPATPSSAATAAQQQ 256



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>AK063262:Os03g0325600 |
          Length = 328

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 221 IDSAKHEDVSVKSTQFGLLLPPDLAVASLPSTSGAAAQISHSQ 93
           +DS   +D+   S Q G +  P  + AS P+T  +AA  +  Q
Sbjct: 214 VDSGGSDDLFAISRQMGFVGSPRCSPASSPATPSSAATAAQQQ 256



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>Os02g0131700:Os02g0131700 |
          Length = 459

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = -2

Query: 278 TVLVSELCVRD*--SREVY-GDIDSAKHE-DVSVKSTQFGLLLPPDLAVASLPSTSGAAA 111
           T +  E  V+D   S+ VY G++ S+  E D+  +  +FG L+P  +A+ S   T G  A
Sbjct: 290 TDVYGEFAVQDDEESKSVYVGNVPSSVSEADLENEFKKFGRLIPDGVAIRSRKETGGYYA 349

Query: 110 QISHSQKS 87
            +   + S
Sbjct: 350 FVEFEELS 357


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 10,463,302
Number of extensions: 191757
Number of successful extensions: 449
Number of sequences better than 10.0: 7
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 7
Length of query: 146
Length of database: 15,399,855
Length adjustment: 91
Effective length of query: 55
Effective length of database: 11,756,124
Effective search space: 646586820
Effective search space used: 646586820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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