| Clone Name | FLbaf21c17 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os03g47240:12003.t04085:unspliced-genomic expressed protein| Length = 3440 Score = 43.2 bits (88), Expect(3) = 5e-05 Identities = 16/22 (72%), Positives = 17/22 (77%) Frame = +1 / +3 Query: 85 SDFWECDIWAAAPEVLGREATA 150 SD WEC IWA + EVLGREA A Sbjct: 3009 SDLWECYIWATSSEVLGREAAA 3074 Score = 22.6 bits (43), Expect(3) = 5e-05 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +2 / +2 Query: 356 VLEGIICTMHIMDSNPNHHFG 418 V+E I T + PNHHFG Sbjct: 3287 VVERNIATSTDERNIPNHHFG 3349 Score = 21.7 bits (41), Expect(3) = 5e-05 Identities = 8/8 (100%), Positives = 8/8 (100%) Frame = +1 / +2 Query: 37 QDAALLPP 60 QDAALLPP Sbjct: 1301 QDAALLPP 1324 Score = 42.3 bits (86), Expect = 0.002 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +2 / +1 Query: 89 ISGNVIFGPPLQKYW 133 ISGNVIFGPPLQKYW Sbjct: 3013 ISGNVIFGPPLQKYW 3057 Score = 34.5 bits (69), Expect = 0.43 Identities = 16/22 (72%), Positives = 17/22 (77%) Frame = -2 / -2 Query: 149 AVASLPSTSGAAAQISHSQKSL 84 A ASLPSTS AQI HSQ+SL Sbjct: 3073 AAASLPSTSEEVAQI*HSQRSL 3008 Score = 34.5 bits (69), Expect = 0.43 Identities = 13/15 (86%), Positives = 13/15 (86%) Frame = -1 / -1 Query: 132 QYFWSGGPNITFPEI 88 QYF GGPNITFPEI Sbjct: 3056 QYF*RGGPNITFPEI 3012 Score = 33.1 bits (66), Expect = 1.1 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +3 / +2 Query: 93 LGM*YLGRRSRSTGQRSNSKIRRQKKAK 176 LGM YLG RSTGQRS+S ++++ + Sbjct: 3017 LGMLYLGHLFRSTGQRSSSSSSKREQKR 3100
>LOC_Os06g51150:12006.t04798:unspliced-genomic catalase isozyme B, putative, expressed| Length = 4170 Score = 32.7 bits (65), Expect = 1.5 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -1 / -2 Query: 333 SKANKDLRLPKNPSTFSHHCISFRIMCPRLIEG 235 +KANK ++ K T+S HCIS + P+ +G Sbjct: 3920 TKANKRWQMYKQVQTYSTHCISLYYLFPKTQQG 3822
>LOC_Os06g38670:12006.t03566:unspliced-genomic receptor-like protein kinase precursor, putative| Length = 7790 Score = 32.2 bits (64), Expect = 2.1 Identities = 14/21 (66%), Positives = 16/21 (76%) Frame = -2 / -3 Query: 398 SNPLCAWYK*YLPVRNLGQLI 336 S+PLCA YK Y+ RNLG LI Sbjct: 5625 SHPLCAAYKGYIYRRNLGVLI 5563
>LOC_Os05g51130:12005.t04542:unspliced-genomic mitochondrial chaperone BCS1, putative, expressed| Length = 2023 Score = 32.2 bits (64), Expect = 2.1 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -2 / -3 Query: 437 YFFFFFGQNGGLDSNPLCAWYK 372 +FFFFFG GG + + WY+ Sbjct: 125 FFFFFFGMGGGGEGELVLKWYE 60
>LOC_Os02g22260:12002.t02014:unspliced-genomic fruit protein PKIWI502, putative, expressed| Length = 11685 Score = 32.2 bits (64), Expect = 2.1 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -2 / +1 Query: 170 LLLPPDLAVASLPSTSGAAAQISHSQKS 87 +L PPDL+ +PS G + Q SH +S Sbjct: 13 ILSPPDLSAPQIPSRPGCSQQESHRHRS 96
>LOC_Os06g06960:12006.t00581:unspliced-genomic S-locus-like receptor protein kinase, putative, expressed| Length = 2678 Score = 32.2 bits (64), Expect = 2.1 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = +1 / +2 Query: 94 WECDIWAAAPEVLGREATARSGGKRRPNWVDLTETSSCFAESM 222 W + W PE+ T S RR N+ +L + + CF E + Sbjct: 1469 WAANKWGRRPEIQDEGYTIISSQFRRFNYKELEKATDCFQEML 1597
>LOC_Os02g43670:12002.t03951:unspliced-genomic transferase family protein, expressed| Length = 4830 Score = 31.8 bits (63), Expect = 2.9 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +1 / -3 Query: 118 APEVLGREATARSGGKRRPNWVDLTETSSCFAESMSPYTSLDQSRTHNS 264 +P GR A ARS +RR + T +++ ++ + Y DQS H S Sbjct: 2815 SPASAGRPAPARSSRRRRTRRLPGTVSAAHTSKQTNMYAHQDQSSAHTS 2669
>LOC_Os12g05640:12012.t00452:unspliced-genomic rf1 protein, mitochondrial precursor, putative, expressed| Length = 2718 Score = 31.3 bits (62), Expect = 3.9 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 / -2 Query: 127 VLGREATARSGGKRRPNWVDLTET 198 V+G+E + G+RRP W+ TET Sbjct: 440 VVGKERRRETRGRRRPRWMARTET 369
>LOC_Os10g12354:12010.t01017:unspliced-genomic NUMOD3 motif family protein, expressed| Length = 9821 Score = 31.3 bits (62), Expect = 3.9 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +1 / -1 Query: 112 AAAPEVLGREATARSGGKRRPNWVDLTETSSCFAESMSPYTSLDQSRTH 258 AA LG G KR+ N++ SC+ +P LDQS +H Sbjct: 6452 AATHTPLGIAPNLHGGKKRKINFIHAPGKESCYT*PYAP*KILDQSSSH 6306
>LOC_Os01g58640:12001.t05259:unspliced-genomic nucleotide pyrophosphatase/phosphodiesterase, putative, expressed| Length = 7303 Score = 30.9 bits (61), Expect = 5.4 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = -3 / +2 Query: 412 MVVWIRIHYVHGTNDTFQY 356 +V+W R+H+ H N TF+Y Sbjct: 4658 LVIWGRLHWTHQWNTTFRY 4714
>LOC_Os07g48630:12007.t04493:unspliced-genomic ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed| Length = 2813 Score = 30.9 bits (61), Expect = 5.4 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +1 / -2 Query: 118 APEVLGREATARSGGKRRPNWVDLTETSSCFAESMSPYTSL 240 +PE L + A SGG R P W +SSC + SL Sbjct: 1762 SPETLALKDAAESGGGRAPGWSLR*RSSSCLRTASQVTISL 1640
>LOC_Os03g32190:12003.t02811:unspliced-genomic transposon protein, putative, unclassified, expressed| Length = 2315 Score = 30.4 bits (60), Expect = 7.4 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = -2 / -2 Query: 185 STQFGLLLPPDLAVASLPSTSGAAA 111 +T F LLL +L +LPST GAAA Sbjct: 235 ATVFNLLLEGNLLTGTLPSTFGAAA 161
>LOC_Os03g32180:12003.t02812:unspliced-genomic polygalacturonase inhibitor 1 precursor, putative| Length = 1420 Score = 30.4 bits (60), Expect = 7.4 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = -2 / +1 Query: 185 STQFGLLLPPDLAVASLPSTSGAAA 111 +T F LLL +L +LPST GAAA Sbjct: 436 ATVFNLLLEGNLLTGTLPSTFGAAA 510
>LOC_Os11g11320:12011.t01020:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 2486 Score = 30.4 bits (60), Expect = 7.4 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +1 / -3 Query: 115 AAPEVLGREATARSGGKRRPNW 180 AA R ATAR GG+RR W Sbjct: 2283 AASRTTARAATARRGGRRRRRW 2218
>LOC_Os04g01610:12004.t00059:unspliced-genomic expressed protein| Length = 1998 Score = 30.4 bits (60), Expect = 7.4 Identities = 10/29 (34%), Positives = 12/29 (41%) Frame = +1 / -3 Query: 94 WECDIWAAAPEVLGREATARSGGKRRPNW 180 W C W A +GG+RRP W Sbjct: 589 WTCTAWPGRARCP*APAVTGAGGRRRPTW 503 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 145,353,333 Number of extensions: 1866883 Number of successful extensions: 7017 Number of sequences better than 10.0: 15 Length of query: 146 Length of database: 55,613,886 Length adjustment: 47 Effective length of query: 99 Effective length of database: 52,968,820 Effective search space: 5243913180 Effective search space used: 5243913180 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)