ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf21c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q62968:SCNAA_RAT Sodium channel protein type 10 subunit alpha - ... 30 3.2
2Q6PE65:CN118_MOUSE Uncharacterized protein C14orf118 homolog - M... 30 3.2
3Q9Y5Y9:SCNAA_HUMAN Sodium channel protein type 10 subunit alpha ... 30 4.1
4Q9NWQ4:CN118_HUMAN Uncharacterized protein C14orf118 - Homo sapi... 29 7.2
5Q02787:PURA_SCHPO Adenylosuccinate synthetase - Schizosaccharomy... 28 9.4

>Q62968:SCNAA_RAT Sodium channel protein type 10 subunit alpha - Rattus norvegicus|
           (Rat)
          Length = 1956
 Score = 30.0 bits (66), Expect = 3.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 319 RSEVTEKPKYIFTSLY*FQNYVSATDRGKCMATLT 215
           R+++ EK +Y+FT +Y F+  +    RG C+   T
Sbjct: 149 RTDLPEKVEYVFTVIYTFEALIKILARGFCLNEFT 183



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>Q6PE65:CN118_MOUSE Uncharacterized protein C14orf118 homolog - Mus musculus (Mouse)|
          Length = 482

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +1

Query: 103 DIW---AAAPEVLGREATARSGGKRRPNWVDLTETSSCFAESMSPYTSLDQS 249
           ++W   A +P    R+   R G KRR ++  L E + CF+E+    +SLD++
Sbjct: 23  ELWEEMALSPRQQRRQLRKRRGRKRRSDFTHLAEHACCFSEASE--SSLDEA 72



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>Q9Y5Y9:SCNAA_HUMAN Sodium channel protein type 10 subunit alpha - Homo sapiens (Human)|
          Length = 1956

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 319 RSEVTEKPKYIFTSLY*FQNYVSATDRGKCMATLT 215
           R+++ EK +Y+FT +Y F+  +    RG C+   T
Sbjct: 149 RTDLPEKIEYVFTVIYTFEALIKILARGFCLNEFT 183



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>Q9NWQ4:CN118_HUMAN Uncharacterized protein C14orf118 - Homo sapiens (Human)|
          Length = 453

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +1

Query: 103 DIW---AAAPEVLGREATARSGGKRRPNWVDLTETSSCFAESMSPYTSLDQS 249
           ++W   A +P    R+   R G KRR ++  L E + C++E+    +SLD++
Sbjct: 23  ELWEEMALSPRQQRRQLRKRRGRKRRSDFTHLAEHTCCYSEASE--SSLDEA 72



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>Q02787:PURA_SCHPO Adenylosuccinate synthetase - Schizosaccharomyces pombe (Fission|
           yeast)
          Length = 434

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 130 LGREATARSGGKRRPNWVDLTETSSCFAESMSPYTSLDQSR 252
           +GRE    +G KRR  W+DL      ++  ++ YTSL+ ++
Sbjct: 302 VGREVGVTTGRKRRCGWLDLVVVK--YSTMINGYTSLNLTK 340


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 63,969,090
Number of extensions: 1116076
Number of successful extensions: 2386
Number of sequences better than 10.0: 5
Number of HSP's gapped: 2386
Number of HSP's successfully gapped: 5
Length of query: 146
Length of database: 100,686,439
Length adjustment: 102
Effective length of query: 44
Effective length of database: 72,708,349
Effective search space: 3199167356
Effective search space used: 3199167356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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