>Q6BZU2:CCS1_YARLI Superoxide dismutase 1 copper chaperone - Yarrowia lipolytica|
           (Candida lipolytica)
          Length = 234
 Score = 42.0 bits (97), Expect = 0.003
 Identities = 17/59 (28%), Positives = 34/59 (57%)
 Frame = +2

Query: 233 TVELKVKIDCDGCELKIRNILANMKGVQSVEVNRKQHKVTVKGFVEPQRVLRRVQSTGK 409
           T    V ++C+ C   ++  LAN++G++SV+       ++V G   P ++++ VQ+ GK
Sbjct: 4   TTTFAVPLECESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAVQNIGK 62

>Q9KPZ7:ATCU_VIBCH Copper-transporting P-type ATPase - Vibrio cholerae|
          Length = 915

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +2

Query: 233 TVELKVK-IDCDGCELKIRNILANMKGVQSVEVNRKQHKVTVKG-FVEPQRVLRRVQSTG 406
           T+ L +K + C  C   +   L +++GVQS +VN  +    V+G F  PQ +L  +QS+G
Sbjct: 173 TLSLLIKGMTCASCVASVEKALLSVEGVQSAQVNLTEQSALVRGIFANPQPLLNAIQSSG 232

Query: 407 KWVEL 421
              E+
Sbjct: 233 YQAEI 237

>Q6BK66:CCS1_DEBHA Superoxide dismutase 1 copper chaperone - Debaryomyces hansenii|
           (Yeast) (Torulaspora hansenii)
          Length = 250

 Score = 40.8 bits (94), Expect = 0.007
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +2

Query: 248 VKIDCDGCELKIRNILANMKGVQSVEVNRKQHKVTVKGFVEPQRVLRRVQSTGK 409
           V ++C  C   +   L ++ G+   +++ K + VT +G V P  +++ +QSTGK
Sbjct: 11  VPMECQSCVDSVSLSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAIQSTGK 64

>O14618:CCS_HUMAN Copper chaperone for superoxide dismutase - Homo sapiens (Human)|
          Length = 274

 Score = 36.6 bits (83), Expect = 0.12
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +2

Query: 233 TVELKVKIDCDGCELKIRNILANMKGVQSVEVNRKQHKVTVKGFVEPQRVLRRVQSTGK 409
           T+E  V++ C  C   +R  L  + GVQ VEV+ +   V V   +  Q V   ++ TG+
Sbjct: 13  TLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGR 71

>P17239:MERA_THIFE Mercuric reductase - Thiobacillus ferrooxidans (Acidithiobacillus|
           ferrooxidans)
          Length = 547

 Score = 35.4 bits (80), Expect = 0.27
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
 Frame = +2

Query: 260 CDGCELKIRNILANMKGVQSVEVNRKQ--HKVTVKGFVEPQRVLRRVQSTGKWVELWPYV 433
           CDGC   +R  L  + GV+  +V+      +V ++G V  QR+++ V ++G  V      
Sbjct: 16  CDGCAAHVRKALEGVPGVREAQVSYPDATARVVLEGEVPMQRLIKAVVASGYGV------ 69

Query: 434 PYTNPYMAPVYDKRAPAGHVRKVEGVMPVSTGQEERLATLFSEDNPNACSLM*TV-GMQV 610
                             H R  +G    + GQE  +A + S     AC+L     G +V
Sbjct: 70  ------------------HPRS-DGASSTNDGQELHIAVIGSGGAAMACALKAVERGARV 110

Query: 611 SLAER 625
           +L ER
Sbjct: 111 TLIER 115

>Q9JK72:CCS_RAT Copper chaperone for superoxide dismutase - Rattus norvegicus (Rat)|
          Length = 274

 Score = 35.0 bits (79), Expect = 0.36
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 236 VELKVKIDCDGCELKIRNILANMKGVQSVEVNRKQHKVTVKGFVEPQRVLRRVQSTGK 409
           +E  V++ C  C   +   L    GVQ+VEV  +   V V+  +  Q V   ++STG+
Sbjct: 14  LEFTVQMSCQSCVDAVHKTLKGAAGVQNVEVQLENQMVLVQTTLPSQEVQALLESTGR 71

>Q9WU84:CCS_MOUSE Copper chaperone for superoxide dismutase - Mus musculus (Mouse)|
          Length = 274

 Score = 34.7 bits (78), Expect = 0.47
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 236 VELKVKIDCDGCELKIRNILANMKGVQSVEVNRKQHKVTVKGFVEPQRVLRRVQSTGK 409
           +E  V++ C  C   +   L  + GVQ+V+V  +   V V+  +  Q V   ++STG+
Sbjct: 14  LEFAVQMSCQSCVDAVHKTLKGVAGVQNVDVQLENQMVLVQTTLPSQEVQALLESTGR 71

>Q9N9X3:CTX80_EUPOC Ciliary WD repeat-containing protein ctxp80 - Euplotes|
           octocarinatus
          Length = 716

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 284 RNILANMKGVQSVEVNRKQHKVTVKGFVEP-QRVLRRVQSTGKWVELWPYVP 436
           R++  N+ G  +V V     +VT++G V+   +V + +  +G+W+E   Y P
Sbjct: 490 RSVAVNVGGNGNVAVGHNDGRVTIRGGVKSIDKVTKTLTDSGEWIECMAYSP 541

>Q6PWT7:CCS_PIG Copper chaperone for superoxide dismutase - Sus scrofa (Pig)|
          Length = 274

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 236 VELKVKIDCDGCELKIRNILANMKGVQSVEVNRKQHKVTVKGFVEPQRVLRRVQSTGK 409
           +E  V++ C  C   +   L  + G+QSVEV  +   V V+  +  Q V   ++ TG+
Sbjct: 14  LEFAVQMTCQSCVDAVSRSLQGVAGIQSVEVQLENQMVLVQTTLPSQVVQALLEDTGR 71

>Q75DD6:CCS1_ASHGO Superoxide dismutase 1 copper chaperone - Ashbya gossypii (Yeast)|
           (Eremothecium gossypii)
          Length = 238

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 248 VKIDCDGCELKIRNILANMKGVQSVEVNRKQHKVTVKGFVEPQRVLRRVQSTGK 409
           V + C  C  +I   L  + GVQ V  + ++  V V+G   P  +++ + +TG+
Sbjct: 14  VPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGIAPPSSIVQALAATGR 67

>Q96PT3:DUX5_HUMAN Double homeobox protein 5 - Homo sapiens (Human)|
          Length = 197

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -2

Query: 666 GTITPEKGRRSTKGLSASETCMPTVYMREQAFGLSSLKSVARRSSWPVETGMTPSTLRTW 487
           G   P+KGRR    ++ S+T +       +AF       +A R     ETG+  S ++ W
Sbjct: 114 GRRDPQKGRRKRTAITGSQTALLL-----RAFEKDRFPGIAAREELARETGLPESRIQIW 168

Query: 486 PAGARLSYTG 457
               R  + G
Sbjct: 169 FQNRRARHRG 178

>O43812:DUX1_HUMAN Double homeobox protein 1 - Homo sapiens (Human)|
          Length = 170

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -2

Query: 666 GTITPEKGRRSTKGLSASETCMPTVYMREQAFGLSSLKSVARRSSWPVETGMTPSTLRTW 487
           G   P+KGRR    ++ S+T +       +AF       +A R     ETG+  S ++ W
Sbjct: 87  GRRDPQKGRRKRTAITGSQTALLL-----RAFEKDRFPGIAAREELARETGLPESRIQIW 141

Query: 486 PAGARLSYTG 457
               R  + G
Sbjct: 142 FQNRRARHRG 151

>Q8BH44:COR2B_MOUSE Coronin-2B - Mus musculus (Mouse)|
          Length = 475

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 311 VQSVEVNRKQHKVTVKGFVEPQRVLRRVQSTGKWVELWPYVPYTNPYMAP 460
           V + EV R    VT+KG +EP  ++   +S     +++P  P T P + P
Sbjct: 327 VSACEVFRFYKLVTLKGLIEPISMIVPRRSDSYQEDIYPMTPGTEPALTP 376

>Q9UQ03:COR2B_HUMAN Coronin-2B - Homo sapiens (Human)|
          Length = 475

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 311 VQSVEVNRKQHKVTVKGFVEPQRVLRRVQSTGKWVELWPYVPYTNPYMAP 460
           V + EV R    VT+KG +EP  ++   +S     +++P  P T P + P
Sbjct: 327 VSACEVFRFYKLVTLKGLIEPISMIVPRRSDSYQEDIYPMTPGTEPALTP 376

>Q9QZK2:BCAR3_MOUSE Breast cancer anti-estrogen resistance protein 3 - Mus musculus|
            (Mouse)
          Length = 820

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 40/207 (19%), Positives = 84/207 (40%), Gaps = 24/207 (11%)
 Frame = +2

Query: 41   LISYAWSSYLNHIS--FSSRIVNLEKKKSQVIERGEAMGGTLRFLSDVLLGGNSHGRHNK 214
            ++ +A   + NH +   +  +++++ K ++++E  E    ++   S + L    HGR  +
Sbjct: 531  MLKHAKELFTNHDARVIAQHMLSVDCKVARILEVSEDRKRSMGVSSGLELITLPHGRQLR 590

Query: 215  KR--RQFNTVELKVKIDCDGCELKIRNILANMKGVQSVEVNRKQHKVTVKGFVEPQRVLR 388
                 + NT+ + + +D  GC   + N    +  +  V V  K     +  F    + L 
Sbjct: 591  LDIIERHNTMAIGIAVDILGCTGTLENRAGTLNKIIQVAVELKDAMGDLYAFSAIMKALE 650

Query: 389  RVQSTGKWVELWPYVPYTNPYMAPVYDKR----------------APAGHVRKVEGVMPV 520
              Q T +  + W  + +     A +Y+K+                 PA +V  V  +MP+
Sbjct: 651  MPQIT-RLEKTWTALRHHYTQTAILYEKQLKPFSKILHEGRESTYVPASNV-SVPLLMPL 708

Query: 521  STGQEERLATL----FSEDNPNACSLM 589
             T  E +  T       E+N  +C ++
Sbjct: 709  VTLMERQAVTFEGTDMWENNDESCEIL 735

>P09498:RDRP_WCMVM RNA replication protein - White clover mosaic virus (strain M)|
           (WCMV)
          Length = 1294

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 421 ELDPLPRGL--DSPQHTLRLHEPLHRHLVLLPVDLHRLNTFHVGEDVPDLELAAV 263
           E++ LP+    D P   L L   LHR    +P+D HR   +  G DV +L + A+
Sbjct: 488 EINTLPKHQHPDIPTDLLTLLTKLHREPTTVPLDNHRARAY--GSDVKNLRIGAL 540

>Q9XIF0:DRL13_ARATH Putative disease resistance protein At1g59780 - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 906

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 21/90 (23%), Positives = 44/90 (48%)
 Frame = +2

Query: 92  RIVNLEKKKSQVIERGEAMGGTLRFLSDVLLGGNSHGRHNKKRRQFNTVELKVKIDCDGC 271
           +I ++ K+ S+VI+  + +G      SD++ G +SH +  +KR   +T   + + +  G 
Sbjct: 108 QITSISKRISKVIQVMQNLG----IKSDIMDGVDSHAQLERKRELRHTFSSESESNLVGL 163

Query: 272 ELKIRNILANMKGVQSVEVNRKQHKVTVKG 361
           E  +  ++  + G      N   H V++ G
Sbjct: 164 EKNVEKLVEELVG------NDSSHGVSITG 187


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 138,806,473
Number of extensions: 3053976
Number of successful extensions: 9339
Number of sequences better than 10.0: 17
Number of HSP's gapped: 9328
Number of HSP's successfully gapped: 17
Length of query: 274
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 162
Effective length of database: 69,965,399
Effective search space: 11334394638
Effective search space used: 11334394638
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)