ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf12o13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001065218.1| Oryza sativa (japonica cultivar-group) Os07g0102400 (Os07g0102400) mRNA, complete cds Length = 1204 Score = 777 bits (392), Expect = 0.0 Identities = 680/776 (87%) Strand = Plus / Plus Query: 220 tgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctccctcaccgcc 279 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 140 tgggaggaagtcaacgagtcgccggcatggcaggacggcgccttcttctccctctccgcc 199 Query: 280 gcctacgccctcgtctccgccgttgcgctgattcagctggtcaggatccagcgcagagtg 339 || |||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| Sbjct: 200 gcatacgccctcgtctccgccgtcgcgctgattcaattgatcaggatccagcgccgagtg 259 Query: 340 cccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtcaatggg 399 ||||| ||||| ||||||||||||||||| || ||||||||||||||| | |||||||| Sbjct: 260 cccgaattcggatggaccacgcagaaggtctttcacctcatgaacttccttgtcaatgga 319 Query: 400 gttcgtgccgttgtattcggattccatgcctatgtcttcctcctccaaacaaaagtttat 459 || ||||| | || || ||||||||| | |||||||||| ||| ||||||||||| Sbjct: 320 gtccgtgctctcgtctttggattccatctccatgtcttccttctctccgcaaaagtttat 379 Query: 460 aagttggtgttactagacctccccggcttactgttcttctcggcctacaccttacttgtt 519 ||||||||| | ||||||||||||||||| |||| ||||| ||||||| | |||||| Sbjct: 380 aagttggtgctgctagacctccccggcttgttgtttttctccacctacactctgcttgtt 439 Query: 520 cttttctgggcagaaatataccatcaggctaggagtctcccaaccgataagttaaggatt 579 || |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 440 ctcttctgggcagaaatataccatcaggccaggagcctcccaacagataagttaaggatt 499 Query: 580 atatacgtagccgttaatagtatcgtatatgcaattcaggtctgtatttgggtgtacctt 639 |||||| ||||||| ||| ||| | || |||||||||| ||||||||||| ||||| Sbjct: 500 atatacatagccgtcaatgccatcatttacacaattcaggtttgtatttgggtatacctc 559 Query: 640 ggaataaacgacaatccgttggttgagctggtcagcaaaatcttcatcgtatctgtctcc 699 ||||| |||||||| || ||||||||||||||||||||||||||||| ||| |||||| Sbjct: 560 ggaatcaacgacaacccattggttgagctggtcagcaaaatcttcatagtagttgtctct 619 Query: 700 gctgtggcccttcttggtttcgcagtatatggtgggaggctgtttgtcttgctgagacgt 759 |||||| |||||||| || ||||||||||||| |||||||| |||||||||||||| Sbjct: 620 tttgtggctcttcttggcttttcagtatatggtggaaggctgttcttcttgctgagacgt 679 Query: 760 ttccccattgaatcaaaggggcgaaaaaagaagctttatgaggttgggactgtgacgaca 819 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 680 ttccccattgaatctaaggggcgaaaaaagaagctttatgaggttgggacagtgactgca 739 Query: 820 atctgctgcacctgtttcctgataagatgcatcgtggtggcaatatctgcatttgatgct 879 |||||||| | |||||||||||||| ||||| |||||||| ||||| ||||||||| || Sbjct: 740 atctgctgtgcttgtttcctgataaggtgcatagtggtggcgatatcagcatttgattct 799 Query: 880 gatgtttctttggaggttttggatcatccaattctagatttcttctattatatgttgaca 939 ||||| ||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct: 800 gatgtatctctggaggttttggaccatccaattcttgatttcttctactatatgttgaca 859 Query: 940 gagatactgccttccgcgctggtccttttcatccttcggaagcttccacctaagcg 995 |||||||||||||| || || |||||||||||||| |||||||| || |||||||| Sbjct: 860 gagatactgccttcagctcttgtccttttcatcctccggaagctccctcctaagcg 915
>dbj|AK066373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062G10, full insert sequence Length = 1205 Score = 761 bits (384), Expect = 0.0 Identities = 678/776 (87%) Strand = Plus / Plus Query: 220 tgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctccctcaccgcc 279 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 141 tgggaggaagtcaacgagtcgccggcatggcaggacggcgccttcttctccctctccgcc 200 Query: 280 gcctacgccctcgtctccgccgttgcgctgattcagctggtcaggatccagcgcagagtg 339 || ||||||||||||||||| | ||||||||||| || |||||||||||||| ||||| Sbjct: 201 gcatacgccctcgtctccgcactcgcgctgattcaattgatcaggatccagcgccgagtg 260 Query: 340 cccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtcaatggg 399 ||||| ||||| ||||||||||||||||| || ||||||||||||||| | |||||||| Sbjct: 261 cccgaattcggatggaccacgcagaaggtctttcacctcatgaacttccttgtcaatgga 320 Query: 400 gttcgtgccgttgtattcggattccatgcctatgtcttcctcctccaaacaaaagtttat 459 || ||||| | || || ||||||||| | |||||||||| ||| ||||||||||| Sbjct: 321 gtccgtgctctcgtctttggattccatctccatgtcttccttctctccgcaaaagtttat 380 Query: 460 aagttggtgttactagacctccccggcttactgttcttctcggcctacaccttacttgtt 519 ||||||||| | ||||||||||||||||| |||| ||||| ||||||| | |||||| Sbjct: 381 aagttggtgctgctagacctccccggcttgttgtttttctccacctacactctgcttgtt 440 Query: 520 cttttctgggcagaaatataccatcaggctaggagtctcccaaccgataagttaaggatt 579 || |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 441 ctcttctgggcagaaatataccatcaggccaggagcctcccaacagataagttaaggatt 500 Query: 580 atatacgtagccgttaatagtatcgtatatgcaattcaggtctgtatttgggtgtacctt 639 |||||| ||||||| ||| ||| | || |||||||||| ||||||||||| ||||| Sbjct: 501 atatacatagccgtcaatgccatcatttacacaattcaggtttgtatttgggtatacctc 560 Query: 640 ggaataaacgacaatccgttggttgagctggtcagcaaaatcttcatcgtatctgtctcc 699 ||||| |||||||| || ||||||||||||||||||||||||||||| ||| |||||| Sbjct: 561 ggaatcaacgacaacccattggttgagctggtcagcaaaatcttcatagtagttgtctct 620 Query: 700 gctgtggcccttcttggtttcgcagtatatggtgggaggctgtttgtcttgctgagacgt 759 |||||| |||||||| || ||||||||||||| |||||||| |||||||||||||| Sbjct: 621 tttgtggctcttcttggcttttcagtatatggtggaaggctgttcttcttgctgagacgt 680 Query: 760 ttccccattgaatcaaaggggcgaaaaaagaagctttatgaggttgggactgtgacgaca 819 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 681 ttccccattgaatctaaggggcgaaaaaagaagctttatgaggttgggacagtgactgca 740 Query: 820 atctgctgcacctgtttcctgataagatgcatcgtggtggcaatatctgcatttgatgct 879 |||||||| | |||||||||||||| ||||| |||||||| ||||| ||||||||| || Sbjct: 741 atctgctgtgcttgtttcctgataaggtgcatagtggtggcgatatcagcatttgattct 800 Query: 880 gatgtttctttggaggttttggatcatccaattctagatttcttctattatatgttgaca 939 ||||| ||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct: 801 gatgtatctctggaggttttggaccatccaattcttgatttcttctactatatgttgaca 860 Query: 940 gagatactgccttccgcgctggtccttttcatccttcggaagcttccacctaagcg 995 |||||||||||||| || || |||||||||||||| |||||||| || |||||||| Sbjct: 861 gagatactgccttcagctcttgtccttttcatcctccggaagctccctcctaagcg 916
>ref|NM_001057037.1| Oryza sativa (japonica cultivar-group) Os03g0565600 (Os03g0565600) mRNA, complete cds Length = 1928 Score = 204 bits (103), Expect = 5e-49 Identities = 349/431 (80%) Strand = Plus / Plus Query: 211 cggggatggtgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctcc 270 ||||| |||||||| || || |||| |||||||||||||||||||||||||||||||||| Sbjct: 244 cggggttggtgggaggaggtgaacgggtcgccggcgtggcaggacggcgccttcttctcc 303 Query: 271 ctcaccgccgcctacgccctcgtctccgccgttgcgctgattcagctggtcaggatccag 330 ||| ||||||||||||| |||||||||||||| |||||| |||| || |||| || ||| Sbjct: 304 ctctccgccgcctacgcgctcgtctccgccgtcgcgctggttcaattgatcagaattcag 363 Query: 331 cgcagagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtc 390 ||||||| || || || ||||| || |||||||| ||||| || |||||||| || Sbjct: 364 ttgcgagtgcctgaatttggttggactacccagaaggttttccatctgatgaactttgtt 423 Query: 391 gtcaatggggttcgtgccgttgtattcggattccatgcctatgtcttcctcctccaaaca 450 || || || |||||||| || || || ||||| ||||| | || ||||| | |||||| Sbjct: 424 gtaaacggagttcgtgctgtcgtgtttggatttcatgctcaagtgttcctttttcaaaca 483 Query: 451 aaagtttataagttggtgttactagacctccccggcttactgttcttctcggcctacacc 510 ||||| |||| ||||||||| | || || || || | || || |||||| | ||||| Sbjct: 484 aaagtgtatactttggtgttattggatcttcctggtcttctatttttctcgacatacacg 543 Query: 511 ttacttgttcttttctgggcagaaatataccatcaggctaggagtctcccaaccgataag 570 ||||||| || |||||||||||||||||||||||||||| || ||| || || || ||| Sbjct: 544 ctacttgtgctgttctgggcagaaatataccatcaggctaagaatcttcccactgacaag 603 Query: 571 ttaaggattatatacgtagccgttaatagtatcgtatatgcaattcaggtctgtatttgg 630 |||||||||||||| | || |||||| || | |||||| ||| ||||| ||||||||| Sbjct: 604 ctaaggattatatacatggcagttaatggtgttatatatgtaatccaggtttgtatttgg 663 Query: 631 gtgtaccttgg 641 | |||||||| Sbjct: 664 atataccttgg 674 Score = 119 bits (60), Expect = 2e-23 Identities = 114/132 (86%) Strand = Plus / Plus Query: 727 tatggtgggaggctgtttgtcttgctgagacgtttccccattgaatcaaaggggcgaaaa 786 |||||||| ||||| ||| || ||||||| ||||| || |||||||||||||| || | | Sbjct: 760 tatggtggaaggctatttttcatgctgaggcgttttccgattgaatcaaagggccgcaga 819 Query: 787 aagaagctttatgaggttgggactgtgacgacaatctgctgcacctgtttcctgataaga 846 |||||||| |||||||||||||||||||| |||| |||| ||| |||||| |||||||| Sbjct: 820 aagaagctctatgaggttgggactgtgacagcaatttgcttcacatgtttcttgataaga 879 Query: 847 tgcatcgtggtg 858 ||||| |||||| Sbjct: 880 tgcattgtggtg 891 Score = 97.6 bits (49), Expect = 9e-17 Identities = 103/121 (85%) Strand = Plus / Plus Query: 869 catttgatgctgatgtttctttggaggttttggatcatccaattctagatttcttctatt 928 |||||||| ||||| | ||| | |||||||||||||||||||| || |||||||| || | Sbjct: 1510 catttgatcctgatctatctcttgaggttttggatcatccaatactggatttcttttact 1569 Query: 929 atatgttgacagagatactgccttccgcgctggtccttttcatccttcggaagcttccac 988 ||||||| || ||||||||||| || || || ||||| |||||||| || |||||||||| Sbjct: 1570 atatgttaacggagatactgccctctgctcttgtcctattcatcctccgtaagcttccac 1629 Query: 989 c 989 | Sbjct: 1630 c 1630
>dbj|AK068863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P13, full insert sequence Length = 1929 Score = 204 bits (103), Expect = 5e-49 Identities = 349/431 (80%) Strand = Plus / Plus Query: 211 cggggatggtgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctcc 270 ||||| |||||||| || || |||| |||||||||||||||||||||||||||||||||| Sbjct: 245 cggggttggtgggaggaggtgaacgggtcgccggcgtggcaggacggcgccttcttctcc 304 Query: 271 ctcaccgccgcctacgccctcgtctccgccgttgcgctgattcagctggtcaggatccag 330 ||| ||||||||||||| |||||||||||||| |||||| |||| || |||| || ||| Sbjct: 305 ctctccgccgcctacgcgctcgtctccgccgtcgcgctggttcaattgatcagaattcag 364 Query: 331 cgcagagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtc 390 ||||||| || || || ||||| || |||||||| ||||| || |||||||| || Sbjct: 365 ttgcgagtgcctgaatttggttggactacccagaaggttttccatctgatgaactttgtt 424 Query: 391 gtcaatggggttcgtgccgttgtattcggattccatgcctatgtcttcctcctccaaaca 450 || || || |||||||| || || || ||||| ||||| | || ||||| | |||||| Sbjct: 425 gtaaacggagttcgtgctgtcgtgtttggatttcatgctcaagtgttcctttttcaaaca 484 Query: 451 aaagtttataagttggtgttactagacctccccggcttactgttcttctcggcctacacc 510 ||||| |||| ||||||||| | || || || || | || || |||||| | ||||| Sbjct: 485 aaagtgtatactttggtgttattggatcttcctggtcttctatttttctcgacatacacg 544 Query: 511 ttacttgttcttttctgggcagaaatataccatcaggctaggagtctcccaaccgataag 570 ||||||| || |||||||||||||||||||||||||||| || ||| || || || ||| Sbjct: 545 ctacttgtgctgttctgggcagaaatataccatcaggctaagaatcttcccactgacaag 604 Query: 571 ttaaggattatatacgtagccgttaatagtatcgtatatgcaattcaggtctgtatttgg 630 |||||||||||||| | || |||||| || | |||||| ||| ||||| ||||||||| Sbjct: 605 ctaaggattatatacatggcagttaatggtgttatatatgtaatccaggtttgtatttgg 664 Query: 631 gtgtaccttgg 641 | |||||||| Sbjct: 665 atataccttgg 675 Score = 119 bits (60), Expect = 2e-23 Identities = 114/132 (86%) Strand = Plus / Plus Query: 727 tatggtgggaggctgtttgtcttgctgagacgtttccccattgaatcaaaggggcgaaaa 786 |||||||| ||||| ||| || ||||||| ||||| || |||||||||||||| || | | Sbjct: 761 tatggtggaaggctatttttcatgctgaggcgttttccgattgaatcaaagggccgcaga 820 Query: 787 aagaagctttatgaggttgggactgtgacgacaatctgctgcacctgtttcctgataaga 846 |||||||| |||||||||||||||||||| |||| |||| ||| |||||| |||||||| Sbjct: 821 aagaagctctatgaggttgggactgtgacagcaatttgcttcacatgtttcttgataaga 880 Query: 847 tgcatcgtggtg 858 ||||| |||||| Sbjct: 881 tgcattgtggtg 892 Score = 97.6 bits (49), Expect = 9e-17 Identities = 103/121 (85%) Strand = Plus / Plus Query: 869 catttgatgctgatgtttctttggaggttttggatcatccaattctagatttcttctatt 928 |||||||| ||||| | ||| | |||||||||||||||||||| || |||||||| || | Sbjct: 1511 catttgatcctgatctatctcttgaggttttggatcatccaatactggatttcttttact 1570 Query: 929 atatgttgacagagatactgccttccgcgctggtccttttcatccttcggaagcttccac 988 ||||||| || ||||||||||| || || || ||||| |||||||| || |||||||||| Sbjct: 1571 atatgttaacggagatactgccctctgctcttgtcctattcatcctccgtaagcttccac 1630 Query: 989 c 989 | Sbjct: 1631 c 1631
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 133 bits (67), Expect = 2e-27 Identities = 91/99 (91%) Strand = Plus / Minus Query: 211 cggggatggtgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctcc 270 ||||| |||||||| || || |||| |||||||||||||||||||||||||||||||||| Sbjct: 20226557 cggggttggtgggaggaggtgaacgggtcgccggcgtggcaggacggcgccttcttctcc 20226498 Query: 271 ctcaccgccgcctacgccctcgtctccgccgttgcgctg 309 ||| ||||||||||||| |||||||||||||| |||||| Sbjct: 20226497 ctctccgccgcctacgcgctcgtctccgccgtcgcgctg 20226459 Score = 61.9 bits (31), Expect = 5e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 800 aggttgggactgtgacgacaatctgctgcacctgtttcctgataagatgcatcgtggtg 858 |||||||||||||||| |||| |||| ||| |||||| ||||||||||||| |||||| Sbjct: 20222456 aggttgggactgtgacagcaatttgcttcacatgtttcttgataagatgcattgtggtg 20222398 Score = 58.0 bits (29), Expect = 8e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 869 catttgatgctgatgtttctttggaggttttggatcatccaattctagatttcttctatt 928 |||||||| ||||| | ||| | |||||||||||||||||||| || |||||||| || | Sbjct: 20221779 catttgatcctgatctatctcttgaggttttggatcatccaatactggatttcttttact 20221720 Query: 929 atatg 933 ||||| Sbjct: 20221719 atatg 20221715 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 736 aggctgtttgtcttgctgagacgtttccccattgaatcaaaggggcgaaaaaagaagctt 795 ||||| ||| || ||||||| ||||| || |||||||||||||| || | ||||||||| Sbjct: 20222831 aggctatttttcatgctgaggcgttttccgattgaatcaaagggccgcagaaagaagctc 20222772 Query: 796 tatgaggt 803 |||||||| Sbjct: 20222771 tatgaggt 20222764 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 512 tacttgttcttttctgggcagaaatataccatcagg 547 ||||||| || ||||||||||||||||||||||||| Sbjct: 20223739 tacttgtgctgttctgggcagaaatataccatcagg 20223704 Score = 52.0 bits (26), Expect = 0.005 Identities = 47/54 (87%) Strand = Plus / Minus Query: 872 ttgatgctgatgtttctttggaggttttggatcatccaattctagatttcttct 925 ||||| ||||||| | | |||||||||||||||||||| | ||||| ||||||| Sbjct: 8363806 ttgatcctgatgtatttctggaggttttggatcatccagtcctagacttcttct 8363753 Score = 44.1 bits (22), Expect = 1.1 Identities = 43/50 (86%) Strand = Plus / Minus Query: 940 gagatactgccttccgcgctggtccttttcatccttcggaagcttccacc 989 ||||||||||| || || || ||||| |||||||| || ||||||||||| Sbjct: 20221635 gagatactgccctctgctcttgtcctattcatcctccgtaagcttccacc 20221586 Score = 42.1 bits (21), Expect = 4.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 386 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 1102750 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 1102698
>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete sequence Length = 156929 Score = 133 bits (67), Expect = 2e-27 Identities = 91/99 (91%) Strand = Plus / Minus Query: 211 cggggatggtgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctcc 270 ||||| |||||||| || || |||| |||||||||||||||||||||||||||||||||| Sbjct: 28835 cggggttggtgggaggaggtgaacgggtcgccggcgtggcaggacggcgccttcttctcc 28776 Query: 271 ctcaccgccgcctacgccctcgtctccgccgttgcgctg 309 ||| ||||||||||||| |||||||||||||| |||||| Sbjct: 28775 ctctccgccgcctacgcgctcgtctccgccgtcgcgctg 28737 Score = 61.9 bits (31), Expect = 5e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 800 aggttgggactgtgacgacaatctgctgcacctgtttcctgataagatgcatcgtggtg 858 |||||||||||||||| |||| |||| ||| |||||| ||||||||||||| |||||| Sbjct: 24734 aggttgggactgtgacagcaatttgcttcacatgtttcttgataagatgcattgtggtg 24676 Score = 58.0 bits (29), Expect = 8e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 869 catttgatgctgatgtttctttggaggttttggatcatccaattctagatttcttctatt 928 |||||||| ||||| | ||| | |||||||||||||||||||| || |||||||| || | Sbjct: 24057 catttgatcctgatctatctcttgaggttttggatcatccaatactggatttcttttact 23998 Query: 929 atatg 933 ||||| Sbjct: 23997 atatg 23993 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 736 aggctgtttgtcttgctgagacgtttccccattgaatcaaaggggcgaaaaaagaagctt 795 ||||| ||| || ||||||| ||||| || |||||||||||||| || | ||||||||| Sbjct: 25109 aggctatttttcatgctgaggcgttttccgattgaatcaaagggccgcagaaagaagctc 25050 Query: 796 tatgaggt 803 |||||||| Sbjct: 25049 tatgaggt 25042 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 512 tacttgttcttttctgggcagaaatataccatcagg 547 ||||||| || ||||||||||||||||||||||||| Sbjct: 26017 tacttgtgctgttctgggcagaaatataccatcagg 25982 Score = 44.1 bits (22), Expect = 1.1 Identities = 43/50 (86%) Strand = Plus / Minus Query: 940 gagatactgccttccgcgctggtccttttcatccttcggaagcttccacc 989 ||||||||||| || || || ||||| |||||||| || ||||||||||| Sbjct: 23913 gagatactgccctctgctcttgtcctattcatcctccgtaagcttccacc 23864
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 131 bits (66), Expect = 6e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 220 tgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctccctcaccgcc 279 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 149045 tgggaggaagtcaacgagtcgccggcatggcaggacggcgccttcttctccctctccgcc 148986 Query: 280 gcctacgccctcgtctccgccgttgcgctg 309 || |||||||||||||||||||| |||||| Sbjct: 148985 gcatacgccctcgtctccgccgtcgcgctg 148956 Score = 111 bits (56), Expect = 6e-21 Identities = 65/68 (95%) Strand = Plus / Minus Query: 736 aggctgtttgtcttgctgagacgtttccccattgaatcaaaggggcgaaaaaagaagctt 795 |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 147794 aggctgttcttcttgctgagacgtttccccattgaatctaaggggcgaaaaaagaagctt 147735 Query: 796 tatgaggt 803 |||||||| Sbjct: 147734 tatgaggt 147727 Score = 109 bits (55), Expect = 2e-20 Identities = 103/119 (86%) Strand = Plus / Minus Query: 616 caggtctgtatttgggtgtaccttggaataaacgacaatccgttggttgagctggtcagc 675 ||||| ||||||||||| ||||| ||||| |||||||| || |||||||||||||||||| Sbjct: 148021 caggtttgtatttgggtatacctcggaatcaacgacaacccattggttgagctggtcagc 147962 Query: 676 aaaatcttcatcgtatctgtctccgctgtggcccttcttggtttcgcagtatatggtgg 734 ||||||||||| ||| |||||| |||||| |||||||| || ||||||||||||| Sbjct: 147961 aaaatcttcatagtagttgtctcttttgtggctcttcttggcttttcagtatatggtgg 147903 Score = 101 bits (51), Expect = 6e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 454 gtttataagttggtgttactagacctccccggcttactgttcttctcggcctacacctta 513 ||||||||||||||| | ||||||||||||||||| |||| ||||| ||||||| | Sbjct: 148457 gtttataagttggtgctgctagacctccccggcttgttgtttttctccacctacactctg 148398 Query: 514 cttgttcttttctgggcagaaatataccatcaggc 548 |||||||| |||||||||||||||||||||||||| Sbjct: 148397 cttgttctcttctgggcagaaatataccatcaggc 148363 Score = 101 bits (51), Expect = 6e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 320 tcaggatccagcgcagagtgcccgagttcggctggaccacgcagaaggtgttccacctca 379 |||||||||||||| |||||||||| ||||| ||||||||||||||||| || ||||||| Sbjct: 148826 tcaggatccagcgccgagtgcccgaattcggatggaccacgcagaaggtctttcacctca 148767 Query: 380 tgaacttcgtcgtcaatgg 398 |||||||| | |||||||| Sbjct: 148766 tgaacttccttgtcaatgg 148748 Score = 93.7 bits (47), Expect = 1e-15 Identities = 71/79 (89%) Strand = Plus / Minus Query: 855 ggtggcaatatctgcatttgatgctgatgtttctttggaggttttggatcatccaattct 914 |||||| ||||| ||||||||| ||||||| ||| ||||||||||||| ||||||||||| Sbjct: 146694 ggtggcgatatcagcatttgattctgatgtatctctggaggttttggaccatccaattct 146635 Query: 915 agatttcttctattatatg 933 ||||||||||| |||||| Sbjct: 146634 tgatttcttctactatatg 146616 Score = 77.8 bits (39), Expect = 8e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 933 gttgacagagatactgccttccgcgctggtccttttcatccttcggaagcttccacctaa 992 ||||||||||||||||||||| || || |||||||||||||| |||||||| || ||||| Sbjct: 146499 gttgacagagatactgccttcagctcttgtccttttcatcctccggaagctccctcctaa 146440 Query: 993 gcg 995 ||| Sbjct: 146439 gcg 146437 Score = 67.9 bits (34), Expect = 8e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 544 caggctaggagtctcccaaccgataagttaaggattatatacgtagccgt 593 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||| Sbjct: 148281 caggccaggagcctcccaacagataagttaaggattatatacatagccgt 148232 Score = 52.0 bits (26), Expect = 0.005 Identities = 50/58 (86%) Strand = Plus / Minus Query: 800 aggttgggactgtgacgacaatctgctgcacctgtttcctgataagatgcatcgtggt 857 |||||||||| ||||| |||||||||| | |||||||||||||| ||||| ||||| Sbjct: 147022 aggttgggacagtgactgcaatctgctgtgcttgtttcctgataaggtgcatagtggt 146965
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 131 bits (66), Expect = 6e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 220 tgggaagacgtcaacgagtcgccggcgtggcaggacggcgccttcttctccctcaccgcc 279 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 148344 tgggaggaagtcaacgagtcgccggcatggcaggacggcgccttcttctccctctccgcc 148285 Query: 280 gcctacgccctcgtctccgccgttgcgctg 309 || |||||||||||||||||||| |||||| Sbjct: 148284 gcatacgccctcgtctccgccgtcgcgctg 148255 Score = 111 bits (56), Expect = 6e-21 Identities = 65/68 (95%) Strand = Plus / Minus Query: 736 aggctgtttgtcttgctgagacgtttccccattgaatcaaaggggcgaaaaaagaagctt 795 |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 147093 aggctgttcttcttgctgagacgtttccccattgaatctaaggggcgaaaaaagaagctt 147034 Query: 796 tatgaggt 803 |||||||| Sbjct: 147033 tatgaggt 147026 Score = 109 bits (55), Expect = 2e-20 Identities = 103/119 (86%) Strand = Plus / Minus Query: 616 caggtctgtatttgggtgtaccttggaataaacgacaatccgttggttgagctggtcagc 675 ||||| ||||||||||| ||||| ||||| |||||||| || |||||||||||||||||| Sbjct: 147320 caggtttgtatttgggtatacctcggaatcaacgacaacccattggttgagctggtcagc 147261 Query: 676 aaaatcttcatcgtatctgtctccgctgtggcccttcttggtttcgcagtatatggtgg 734 ||||||||||| ||| |||||| |||||| |||||||| || ||||||||||||| Sbjct: 147260 aaaatcttcatagtagttgtctcttttgtggctcttcttggcttttcagtatatggtgg 147202 Score = 101 bits (51), Expect = 6e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 454 gtttataagttggtgttactagacctccccggcttactgttcttctcggcctacacctta 513 ||||||||||||||| | ||||||||||||||||| |||| ||||| ||||||| | Sbjct: 147756 gtttataagttggtgctgctagacctccccggcttgttgtttttctccacctacactctg 147697 Query: 514 cttgttcttttctgggcagaaatataccatcaggc 548 |||||||| |||||||||||||||||||||||||| Sbjct: 147696 cttgttctcttctgggcagaaatataccatcaggc 147662 Score = 101 bits (51), Expect = 6e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 320 tcaggatccagcgcagagtgcccgagttcggctggaccacgcagaaggtgttccacctca 379 |||||||||||||| |||||||||| ||||| ||||||||||||||||| || ||||||| Sbjct: 148125 tcaggatccagcgccgagtgcccgaattcggatggaccacgcagaaggtctttcacctca 148066 Query: 380 tgaacttcgtcgtcaatgg 398 |||||||| | |||||||| Sbjct: 148065 tgaacttccttgtcaatgg 148047 Score = 93.7 bits (47), Expect = 1e-15 Identities = 71/79 (89%) Strand = Plus / Minus Query: 855 ggtggcaatatctgcatttgatgctgatgtttctttggaggttttggatcatccaattct 914 |||||| ||||| ||||||||| ||||||| ||| ||||||||||||| ||||||||||| Sbjct: 145993 ggtggcgatatcagcatttgattctgatgtatctctggaggttttggaccatccaattct 145934 Query: 915 agatttcttctattatatg 933 ||||||||||| |||||| Sbjct: 145933 tgatttcttctactatatg 145915 Score = 77.8 bits (39), Expect = 8e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 933 gttgacagagatactgccttccgcgctggtccttttcatccttcggaagcttccacctaa 992 ||||||||||||||||||||| || || |||||||||||||| |||||||| || ||||| Sbjct: 145798 gttgacagagatactgccttcagctcttgtccttttcatcctccggaagctccctcctaa 145739 Query: 993 gcg 995 ||| Sbjct: 145738 gcg 145736 Score = 67.9 bits (34), Expect = 8e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 544 caggctaggagtctcccaaccgataagttaaggattatatacgtagccgt 593 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||| Sbjct: 147580 caggccaggagcctcccaacagataagttaaggattatatacatagccgt 147531 Score = 52.0 bits (26), Expect = 0.005 Identities = 50/58 (86%) Strand = Plus / Minus Query: 800 aggttgggactgtgacgacaatctgctgcacctgtttcctgataagatgcatcgtggt 857 |||||||||| ||||| |||||||||| | |||||||||||||| ||||| ||||| Sbjct: 146321 aggttgggacagtgactgcaatctgctgtgcttgtttcctgataaggtgcatagtggt 146264
>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete sequence Length = 151269 Score = 61.9 bits (31), Expect = 5e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 800 aggttgggactgtgacgacaatctgctgcacctgtttcctgataagatgcatcgtggtg 858 |||||||||||||||| |||| |||| ||| |||||| ||||||||||||| |||||| Sbjct: 147513 aggttgggactgtgacagcaatttgcttcacatgtttcttgataagatgcattgtggtg 147455 Score = 58.0 bits (29), Expect = 8e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 869 catttgatgctgatgtttctttggaggttttggatcatccaattctagatttcttctatt 928 |||||||| ||||| | ||| | |||||||||||||||||||| || |||||||| || | Sbjct: 146836 catttgatcctgatctatctcttgaggttttggatcatccaatactggatttcttttact 146777 Query: 929 atatg 933 ||||| Sbjct: 146776 atatg 146772 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 736 aggctgtttgtcttgctgagacgtttccccattgaatcaaaggggcgaaaaaagaagctt 795 ||||| ||| || ||||||| ||||| || |||||||||||||| || | ||||||||| Sbjct: 147888 aggctatttttcatgctgaggcgttttccgattgaatcaaagggccgcagaaagaagctc 147829 Query: 796 tatgaggt 803 |||||||| Sbjct: 147828 tatgaggt 147821 Score = 56.0 bits (28), Expect = 3e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 512 tacttgttcttttctgggcagaaatataccatcagg 547 ||||||| || ||||||||||||||||||||||||| Sbjct: 148796 tacttgtgctgttctgggcagaaatataccatcagg 148761 Score = 44.1 bits (22), Expect = 1.1 Identities = 43/50 (86%) Strand = Plus / Minus Query: 940 gagatactgccttccgcgctggtccttttcatccttcggaagcttccacc 989 ||||||||||| || || || ||||| |||||||| || ||||||||||| Sbjct: 146692 gagatactgccctctgctcttgtcctattcatcctccgtaagcttccacc 146643
>ref|NM_118299.2| Arabidopsis thaliana TOM1 (TOBAMOVIRUS MULTIPLICATION 1) (TOM1) mRNA, complete cds Length = 1405 Score = 60.0 bits (30), Expect = 2e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 393 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 327 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 386 Query: 394 aatggggttcgtgc 407 ||||| |||||||| Sbjct: 387 aatggagttcgtgc 400
>gb|AY079319.1| Arabidopsis thaliana unknown protein (At4g21790) mRNA, complete cds Length = 907 Score = 60.0 bits (30), Expect = 2e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 393 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 184 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 243 Query: 394 aatggggttcgtgc 407 ||||| |||||||| Sbjct: 244 aatggagttcgtgc 257
>gb|AY046049.1| Arabidopsis thaliana unknown protein (At4g21790) mRNA, complete cds Length = 1433 Score = 60.0 bits (30), Expect = 2e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 393 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 327 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 386 Query: 394 aatggggttcgtgc 407 ||||| |||||||| Sbjct: 387 aatggagttcgtgc 400
>dbj|AB016925.1| Arabidopsis thaliana TOM1 mRNA, complete cds Length = 1369 Score = 60.0 bits (30), Expect = 2e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 393 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 324 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 383 Query: 394 aatggggttcgtgc 407 ||||| |||||||| Sbjct: 384 aatggagttcgtgc 397
>gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1664B11, complete sequence Length = 126040 Score = 52.0 bits (26), Expect = 0.005 Identities = 47/54 (87%) Strand = Plus / Minus Query: 872 ttgatgctgatgtttctttggaggttttggatcatccaattctagatttcttct 925 ||||| ||||||| | | |||||||||||||||||||| | ||||| ||||||| Sbjct: 103227 ttgatcctgatgtatttctggaggttttggatcatccagtcctagacttcttct 103174
>emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55 Length = 194916 Score = 50.1 bits (25), Expect = 0.019 Identities = 55/65 (84%) Strand = Plus / Plus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 393 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 188280 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 188339 Query: 394 aatgg 398 ||||| Sbjct: 188340 aatgg 188344
>emb|AL035527.1|ATF17L22 Arabidopsis thaliana DNA chromosome 4, BAC clone F17L22 (ESSAII project) Length = 107702 Score = 50.1 bits (25), Expect = 0.019 Identities = 55/65 (84%) Strand = Plus / Plus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 393 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 102222 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 102281 Query: 394 aatgg 398 ||||| Sbjct: 102282 aatgg 102286
>dbj|AB016924.1| Arabidopsis thaliana TOM1 gene, complete cds Length = 2733 Score = 50.1 bits (25), Expect = 0.019 Identities = 55/65 (84%) Strand = Plus / Plus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtc 393 |||||||| |||| || ||||| || ||||||||||| || || |||||||| |||||| Sbjct: 630 agagtgcctgagtatggttggactactcagaaggtgtttcatcttatgaactttgtcgtc 689 Query: 394 aatgg 398 ||||| Sbjct: 690 aatgg 694
>gb|BT013938.1| Lycopersicon esculentum clone 132961F, mRNA sequence Length = 1286 Score = 48.1 bits (24), Expect = 0.073 Identities = 57/68 (83%) Strand = Plus / Plus Query: 340 cccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtcaatggg 399 ||||||| |||||||| || || ||||||||||| || |||||||| || || ||||| Sbjct: 212 cccgagtatggctggacaacacaaaaggtgttccatctgatgaactttgttgtaaatgga 271 Query: 400 gttcgtgc 407 |||||||| Sbjct: 272 gttcgtgc 279 Score = 44.1 bits (22), Expect = 1.1 Identities = 55/66 (83%) Strand = Plus / Plus Query: 514 cttgttcttttctgggcagaaatataccatcaggctaggagtctcccaaccgataagtta 573 |||||||| || ||||| || ||||| || |||||||||||| | ||||| |||||| | Sbjct: 386 cttgttctattttgggctgagatatatcaccaggctaggagtttaccaacagataagctc 445 Query: 574 aggatt 579 |||||| Sbjct: 446 aggatt 451 Score = 42.1 bits (21), Expect = 4.5 Identities = 99/125 (79%) Strand = Plus / Plus Query: 725 tatatggtgggaggctgtttgtcttgctgagacgtttccccattgaatcaaaggggcgaa 784 |||||||||| ||| | ||| || ||||| | || ||||| |||||||| || ||| | | Sbjct: 597 tatatggtggaaggttatttctcatgctgcggcgcttccctattgaatctaaagggagga 656 Query: 785 aaaagaagctttatgaggttgggactgtgacgacaatctgctgcacctgtttcctgataa 844 |||||||||| |||||||||| | ||||| | || || | |||||||||||| || | Sbjct: 657 gaaagaagcttcatgaggttggatcggtgactgccatatgtttcacctgtttcctcatta 716 Query: 845 gatgc 849 ||||| Sbjct: 717 gatgc 721
>dbj|AB193043.1| Solanum lycopersicum LeTH3 mRNA for tobamovirus multiplication 1 homolog 3, complete cds Length = 1278 Score = 48.1 bits (24), Expect = 0.073 Identities = 57/68 (83%) Strand = Plus / Plus Query: 340 cccgagttcggctggaccacgcagaaggtgttccacctcatgaacttcgtcgtcaatggg 399 ||||||| |||||||| || || ||||||||||| || |||||||| || || ||||| Sbjct: 211 cccgagtatggctggacaacacaaaaggtgttccatctgatgaactttgttgtaaatgga 270 Query: 400 gttcgtgc 407 |||||||| Sbjct: 271 gttcgtgc 278 Score = 44.1 bits (22), Expect = 1.1 Identities = 55/66 (83%) Strand = Plus / Plus Query: 514 cttgttcttttctgggcagaaatataccatcaggctaggagtctcccaaccgataagtta 573 |||||||| || ||||| || ||||| || |||||||||||| | ||||| |||||| | Sbjct: 385 cttgttctattttgggctgagatatatcaccaggctaggagtttaccaacagataagctc 444 Query: 574 aggatt 579 |||||| Sbjct: 445 aggatt 450 Score = 42.1 bits (21), Expect = 4.5 Identities = 99/125 (79%) Strand = Plus / Plus Query: 725 tatatggtgggaggctgtttgtcttgctgagacgtttccccattgaatcaaaggggcgaa 784 |||||||||| ||| | ||| || ||||| | || ||||| |||||||| || ||| | | Sbjct: 596 tatatggtggaaggttatttctcatgctgcggcgcttccctattgaatctaaagggagga 655 Query: 785 aaaagaagctttatgaggttgggactgtgacgacaatctgctgcacctgtttcctgataa 844 |||||||||| |||||||||| | ||||| | || || | |||||||||||| || | Sbjct: 656 gaaagaagcttcatgaggttggatcggtgactgccatatgtttcacctgtttcctcatta 715 Query: 845 gatgc 849 ||||| Sbjct: 716 gatgc 720
>ref|NM_001072578.1| Oryza sativa (japonica cultivar-group) Os12g0125700 (Os12g0125700) mRNA, complete cds Length = 2085 Score = 46.1 bits (23), Expect = 0.29 Identities = 26/27 (96%) Strand = Plus / Plus Query: 276 cgccgcctacgccctcgtctccgccgt 302 |||||||||||||||||||||| |||| Sbjct: 246 cgccgcctacgccctcgtctccaccgt 272
>ref|NM_001072173.1| Oryza sativa (japonica cultivar-group) Os11g0129000 (Os11g0129000) mRNA, complete cds Length = 1278 Score = 46.1 bits (23), Expect = 0.29 Identities = 26/27 (96%) Strand = Plus / Plus Query: 276 cgccgcctacgccctcgtctccgccgt 302 |||||||||||||||||||||| |||| Sbjct: 246 cgccgcctacgccctcgtctccaccgt 272
>ref|NM_001072155.1| Oryza sativa (japonica cultivar-group) Os11g0126100 (Os11g0126100) mRNA, complete cds Length = 1609 Score = 46.1 bits (23), Expect = 0.29 Identities = 26/27 (96%) Strand = Plus / Plus Query: 276 cgccgcctacgccctcgtctccgccgt 302 |||||||||||||||||||||| |||| Sbjct: 269 cgccgcctacgccctcgtctccaccgt 295
>emb|AM261863.1| Nicotiana benthamiana partial TOM1 gene Length = 581 Score = 46.1 bits (23), Expect = 0.29 Identities = 104/131 (79%) Strand = Plus / Plus Query: 727 tatggtgggaggctgtttgtcttgctgagacgtttccccattgaatcaaaggggcgaaaa 786 |||||||| ||| ||||| || ||||| | || || || |||||||| || ||| | | | Sbjct: 321 tatggtggaaggttgtttctcatgctgcgccgctttccaattgaatctaaagggaggaga 380 Query: 787 aagaagctttatgaggttgggactgtgacgacaatctgctgcacctgtttcctgataaga 846 ||||||||| |||||||||| ||||||| | || || | |||||||||||| || || Sbjct: 381 aagaagcttcatgaggttggatctgtgactgccatatgtttcacctgtttcctcattagc 440 Query: 847 tgcatcgtggt 857 ||| ||||||| Sbjct: 441 tgcttcgtggt 451 Score = 42.1 bits (21), Expect = 4.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 517 gttcttttctgggcagaaatataccatcaggctaggagtctcccaaccgataa 569 ||||| || ||||| |||||||| || |||||||||||| | ||||| ||||| Sbjct: 111 gttctattttgggctgaaatatatcaccaggctaggagtttaccaacagataa 163
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Plus Query: 183 cctcgtcgccgcggccaacgcgg 205 ||||||||||||||||||||||| Sbjct: 632002 cctcgtcgccgcggccaacgcgg 632024
>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence Length = 150279 Score = 46.1 bits (23), Expect = 0.29 Identities = 26/27 (96%) Strand = Plus / Plus Query: 276 cgccgcctacgccctcgtctccgccgt 302 |||||||||||||||||||||| |||| Sbjct: 83565 cgccgcctacgccctcgtctccaccgt 83591
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 46.1 bits (23), Expect = 0.29 Identities = 26/27 (96%) Strand = Plus / Plus Query: 276 cgccgcctacgccctcgtctccgccgt 302 |||||||||||||||||||||| |||| Sbjct: 44695 cgccgcctacgccctcgtctccaccgt 44721
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 46.1 bits (23), Expect = 0.29 Identities = 26/27 (96%) Strand = Plus / Minus Query: 276 cgccgcctacgccctcgtctccgccgt 302 |||||||||||||||||||||| |||| Sbjct: 1238006 cgccgcctacgccctcgtctccaccgt 1237980
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 46.1 bits (23), Expect = 0.29 Identities = 26/27 (96%) Strand = Plus / Plus Query: 276 cgccgcctacgccctcgtctccgccgt 302 |||||||||||||||||||||| |||| Sbjct: 1187759 cgccgcctacgccctcgtctccaccgt 1187785 Score = 46.1 bits (23), Expect = 0.29 Identities = 26/27 (96%) Strand = Plus / Minus Query: 276 cgccgcctacgccctcgtctccgccgt 302 |||||||||||||||||||||| |||| Sbjct: 1345920 cgccgcctacgccctcgtctccaccgt 1345894
>dbj|AK067875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121C10, full insert sequence Length = 1611 Score = 46.1 bits (23), Expect = 0.29 Identities = 26/27 (96%) Strand = Plus / Plus Query: 276 cgccgcctacgccctcgtctccgccgt 302 |||||||||||||||||||||| |||| Sbjct: 271 cgccgcctacgccctcgtctccaccgt 297
>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121556 Score = 46.1 bits (23), Expect = 0.29 Identities = 26/27 (96%) Strand = Plus / Plus Query: 276 cgccgcctacgccctcgtctccgccgt 302 |||||||||||||||||||||| |||| Sbjct: 54776 cgccgcctacgccctcgtctccaccgt 54802
>ref|NM_001071709.1| Oryza sativa (japonica cultivar-group) Os10g0537500 (Os10g0537500) mRNA, complete cds Length = 1283 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 226 gacgtcaacgagtcgccggcgtggcaggac 255 ||||| ||||||||||||| |||||||||| Sbjct: 251 gacgtgaacgagtcgccggtgtggcaggac 280
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 226 gacgtcaacgagtcgccggcgtggcaggac 255 ||||| ||||||||||||| |||||||||| Sbjct: 57794 gacgtgaacgagtcgccggtgtggcaggac 57823
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 226 gacgtcaacgagtcgccggcgtggcaggac 255 ||||| ||||||||||||| |||||||||| Sbjct: 20417646 gacgtgaacgagtcgccggtgtggcaggac 20417675
>emb|Z50033.1| C.acetobutylicum cspC gene Length = 2105 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 671 tcagcaaaatcttcatcgtatctgtc 696 ||||||||||||||||| |||||||| Sbjct: 346 tcagcaaaatcttcatcatatctgtc 321
>dbj|AK101318.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034D12, full insert sequence Length = 1284 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 226 gacgtcaacgagtcgccggcgtggcaggac 255 ||||| ||||||||||||| |||||||||| Sbjct: 252 gacgtgaacgagtcgccggtgtggcaggac 281
>dbj|AK061395.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-E02, full insert sequence Length = 1283 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 226 gacgtcaacgagtcgccggcgtggcaggac 255 ||||| ||||||||||||| |||||||||| Sbjct: 251 gacgtgaacgagtcgccggtgtggcaggac 280
>gb|EF051294.1| Gymnadenia conopsea tobamovirus multiplication 1-like mRNA, complete sequence Length = 1166 Score = 42.1 bits (21), Expect = 4.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 505 tacaccttacttgttcttttctgggcagaaatataccatcaggct 549 ||||| |||||||| | ||||||||||||||||| || |||||| Sbjct: 421 tacactttacttgtgttgttctgggcagaaatatatcaccaggct 465
>emb|CT830678.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117H14, full insert sequence Length = 1439 Score = 42.1 bits (21), Expect = 4.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 386 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 427 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 479
>ref|NM_001055322.1| Oryza sativa (japonica cultivar-group) Os03g0120300 (Os03g0120300) mRNA, complete cds Length = 1433 Score = 42.1 bits (21), Expect = 4.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 386 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 421 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 473
>ref|XM_393687.3| PREDICTED: Apis mellifera similar to CG30084-PC, isoform C (LOC410204), mRNA Length = 6042 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 259 gccttcttctccctcaccgcc 279 ||||||||||||||||||||| Sbjct: 1833 gccttcttctccctcaccgcc 1813
>gb|AC122324.4| Mus musculus BAC clone RP23-333I5 from chromosome 3, complete sequence Length = 243378 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 766 attgaatcaaaggggcgaaaa 786 ||||||||||||||||||||| Sbjct: 79648 attgaatcaaaggggcgaaaa 79668
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 42.1 bits (21), Expect = 4.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 386 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 6456 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 6404
>gb|AC022495.17| Homo sapiens 3 BAC RP11-94I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156054 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1079 aagtgctcaaaattttacatgtctg 1103 ||||| ||||||||||||||||||| Sbjct: 97285 aagtgttcaaaattttacatgtctg 97261
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1080 agtgctcaaaattttacatgt 1100 ||||||||||||||||||||| Sbjct: 12611583 agtgctcaaaattttacatgt 12611563
>dbj|AB222377.1| Takifugu rubripes mRNA for T-cell receptor alpha chain, partial cds, clone:TRA1.22 Length = 520 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 436 ttcctcctccaaacaaaagtttataagtt 464 |||| |||||||||| ||||||||||||| Sbjct: 374 ttccacctccaaacacaagtttataagtt 346
>gb|AC022424.6| Homo sapiens chromosome 5 clone CTD-2297D10, complete sequence Length = 104776 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1082 tgctcaaaattttacatgtct 1102 ||||||||||||||||||||| Sbjct: 83572 tgctcaaaattttacatgtct 83592
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 185 tcgtcgccgcggccaacgcggtgct 209 ||||||| ||||||||||||||||| Sbjct: 1447681 tcgtcgcggcggccaacgcggtgct 1447657
>gb|AF110525.1|FRTCRA1 Fugu rubripes T-cell receptor alpha-chain (TCRA) gene, partial sequence Length = 24813 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 436 ttcctcctccaaacaaaagtttataagtt 464 |||| |||||||||| ||||||||||||| Sbjct: 530 ttccacctccaaacacaagtttataagtt 502
>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_B09 Length = 105247 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1080 agtgctcaaaattttacatgt 1100 ||||||||||||||||||||| Sbjct: 8642 agtgctcaaaattttacatgt 8622
>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0572D06 Length = 148920 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1080 agtgctcaaaattttacatgt 1100 ||||||||||||||||||||| Sbjct: 116116 agtgctcaaaattttacatgt 116096
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11, complete sequence Length = 126827 Score = 42.1 bits (21), Expect = 4.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 386 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 122967 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 122915
>dbj|AK104882.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H04, full insert sequence Length = 1304 Score = 42.1 bits (21), Expect = 4.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 386 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 330 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 382
>dbj|AK066854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075C10, full insert sequence Length = 1434 Score = 42.1 bits (21), Expect = 4.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 334 agagtgcccgagttcggctggaccacgcagaaggtgttccacctcatgaactt 386 ||||| || |||| ||| ||||| || |||||||||||||| |||||||||| Sbjct: 422 agagtacctgagtacggatggacgacacagaaggtgttccatttcatgaactt 474
>gb|AC101992.11| Mus musculus chromosome 3, clone RP24-377J3, complete sequence Length = 191967 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1084 ctcaaaattttacatgtctgg 1104 ||||||||||||||||||||| Sbjct: 42458 ctcaaaattttacatgtctgg 42478 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 187,585,633 Number of extensions: 9744050 Number of successful extensions: 206281 Number of sequences better than 10.0: 54 Number of HSP's gapped: 206277 Number of HSP's successfully gapped: 100 Length of query: 1190 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1167 Effective length of database: 18,503,978,556 Effective search space: 21594142974852 Effective search space used: 21594142974852 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
