Clone Information

BLAST Search Result

Clone Name	FLbaf12o11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC149299.1\| Populus trichocarpa clone Pop1-037B22, complete s...	44	0.54
2	gb\|CP000384.1\| Mycobacterium sp. MCS, complete genome	42	2.1
3	gb\|AC115868.12\| Mus musculus chromosome 7, clone RP24-329F21, co...	42	2.1
4	gb\|AC120986.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.1
5	gb\|AC102589.9\| Mus musculus chromosome 8, clone RP23-334O19, com...	42	2.1
6	gb\|AC124515.4\| Mus musculus BAC clone RP23-381E19 from chromosom...	42	2.1
7	gb\|AC110225.5\| Mus musculus chromosome 7, clone RP24-324L10, com...	42	2.1
8	gb\|AC097273.3\| Genomic sequence for Mus musculus, clone RP23-118...	42	2.1
9	gb\|AC006559.6\| Homo sapiens 12p12 BAC RPCI11-501E24 (Roswell Par...	42	2.1
10	emb\|Z73905.1\|CEC32C4 Caenorhabditis elegans Cosmid C32C4, comple...	42	2.1
11	emb\|CR723389.2\|CNS0GL43 Tetraodon nigroviridis full-length cDNA	42	2.1
12	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
13	emb\|AL365188.9\| Human DNA sequence from clone RP4-806J12 on chro...	42	2.1
14	emb\|BX042514.1\|CNS094YU Single read from an extremity of a full-...	42	2.1
15	gb\|U95372.1\|HVU95372 Haloferax volcanii plasmid pHV3 aminotransf...	42	2.1
16	emb\|AL603792.12\| Mouse DNA sequence from clone RP23-328B4 on chr...	42	2.1
17	ref\|XM_001184176.1\| PREDICTED: Strongylocentrotus purpuratus hyp...	40	8.4
18	ref\|XM_790763.2\| PREDICTED: Strongylocentrotus purpuratus hypoth...	40	8.4
19	ref\|XM_001198897.1\| PREDICTED: Strongylocentrotus purpuratus hyp...	40	8.4
20	ref\|XM_001176179.1\| PREDICTED: Strongylocentrotus purpuratus hyp...	40	8.4
21	gb\|AC184110.3\| Pan troglodytes BAC clone CH251-83P9 from chromos...	40	8.4
22	gb\|AC188173.2\| Gallus gallus BAC clone TAM31-35O10 from chromoso...	40	8.4
23	ref\|XM_001081131.1\| PREDICTED: Rattus norvegicus similar to Vinc...	40	8.4
24	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	40	8.4
25	ref\|XM_986908.1\| PREDICTED: Mus musculus similar to Vinculin CG3...	40	8.4
26	ref\|XM_001004454.1\| PREDICTED: Mus musculus similar to Vinculin ...	40	8.4
27	gb\|CP000112.1\| Desulfovibrio desulfuricans G20, complete genome	40	8.4
28	gb\|CP000099.1\| Methanosarcina barkeri str. fusaro chromosome 1, ...	40	8.4
29	gb\|AC111620.5\| Rattus norvegicus 2 BAC CH230-123K4 (Children's H...	40	8.4
30	ref\|XM_618120.2\| PREDICTED: Bos taurus similar to zinc finger pr...	40	8.4
31	ref\|XM_456052.1\| Kluyveromyces lactis NRRL Y-1140, KLLA0F21780g ...	40	8.4
32	gb\|AC135104.22\| Mus musculus strain C57BL/6J clone rp23-206l6, c...	40	8.4
33	gb\|AC164589.6\| Mus musculus chromosome 8, clone RP24-363C11, com...	40	8.4
34	gb\|AC102114.9\| Mus musculus chromosome 10, clone RP23-139F20, co...	40	8.4
35	gb\|AC140227.7\| Mus musculus BAC clone RP24-487N2 from chromosome...	40	8.4
36	dbj\|AK135841.1\| Mus musculus in vitro fertilized eggs cDNA, RIKE...	40	8.4
37	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	8.4
38	gb\|AY063497.1\| Mus musculus RING finger protein 35 (Rnf35) and R...	40	8.4
39	gb\|AC093323.3\| Homo sapiens BAC clone RP11-539L10 from 4, comple...	40	8.4
40	gb\|AC069308.21\| Mus musculus Strain C57BL6/J Chromosome 8 RP23-2...	40	8.4
41	gb\|AC090371.4\| Homo sapiens chromosome 18, clone RP11-746B8, com...	40	8.4
42	emb\|AL671518.3\| Human DNA sequence from clone RP11-315C6 on chro...	40	8.4
43	emb\|AL360219.18\| Human DNA sequence from clone RP11-131L23 on ch...	40	8.4
44	emb\|AL360155.11\| Human DNA sequence from clone RP11-721G11 on ch...	40	8.4
45	emb\|AL357569.12\| Human DNA sequence from clone RP13-137O14 on ch...	40	8.4
46	emb\|AL158091.31\| Human DNA sequence from clone RP5-824A14 on chr...	40	8.4
47	emb\|AL023754.1\|HS272L16 Human DNA sequence from clone RP1-272L16...	40	8.4
48	gb\|AE016819.2\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	8.4
49	gb\|AY849318.1\| Gallus gallus CD1.1 antigen (CD1.1) and CD1.2 ant...	40	8.4
50	gb\|AC113295.5\| Mus musculus chromosome 5, clone RP23-424M12, com...	40	8.4
51	emb\|CR382126.1\| Kluyveromyces lactis strain NRRL Y-1140 chromoso...	40	8.4
52	gb\|AC110556.15\| Mus musculus chromosome 5, clone RP23-250G21, co...	40	8.4
53	emb\|BX927187.7\| Zebrafish DNA sequence from clone DKEY-44L17 in ...	40	8.4
54	gb\|AC074087.4\| Homo sapiens BAC clone RP11-26C10 from 4, complet...	40	8.4
55	gb\|AF210312.1\|AF210312 Azotobacter vinelandii beta-ketothiolase ...	40	8.4
56	gb\|AC114815.5\| Homo sapiens BAC clone RP11-1369K4 from 4, comple...	40	8.4
57	gb\|AC104651.2\| Homo sapiens BAC clone RP11-217P16 from 2, comple...	40	8.4
58	ref\|XM_230593.3\| PREDICTED: Rattus norvegicus similar to Vinculi...	40	8.4
59	gb\|AC108668.5\| Homo sapiens 3 BAC CTD-2650N22 (Cal Tech Human BA...	40	8.4
60	emb\|BX005226.10\| Zebrafish DNA sequence from clone CH211-175P12 ...	40	8.4
61	ref\|XM_309714.2\| Anopheles gambiae str. PEST ENSANGP00000012581 ...	40	8.4
62	emb\|AJ323487.1\|HSA323487 Homo sapiens genomic sequence surroundi...	40	8.4
63	ref\|XM_917820.1\| PREDICTED: Mus musculus similar to Vinculin CG3...	40	8.4
64	emb\|BX005247.9\| Mouse DNA sequence from clone RP23-377A17 on chr...	40	8.4
65	emb\|AL645471.8\| Mouse DNA sequence from clone RP23-456M3 on chro...	40	8.4
66	emb\|AL833780.6\| Mouse DNA sequence from clone RP23-24M22 on chro...	40	8.4
67	gb\|AC153695.2\| Mus musculus 10 BAC RP23-184L5 (Roswell Park Can...	40	8.4
68	gb\|M98813.1\|BRPSERANT Brugia malayi antigen (SPX-1) mRNA, 3' end	40	8.4

>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
          Length = 143392
 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 305   ttgaagcttgatgcttttctga 326
             ||||||||||||||||||||||
Sbjct: 48656 ttgaagcttgatgcttttctga 48677

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>gb|CP000384.1| Mycobacterium sp. MCS, complete genome
          Length = 5705448

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 131    ggccggcggcgggggcgaccaccac 155
              ||||| |||||||||||||||||||
Sbjct: 654685 ggccgtcggcgggggcgaccaccac 654709

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>gb|AC115868.12| Mus musculus chromosome 7, clone RP24-329F21, complete sequence
          Length = 181717

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 435    tttggacctatccatttgaat 455
              |||||||||||||||||||||
Sbjct: 167149 tttggacctatccatttgaat 167129

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>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11,
              complete sequence
          Length = 204649

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 126    caggcggccggcggcgggggc 146
              |||||||||||||||||||||
Sbjct: 132167 caggcggccggcggcgggggc 132187

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>gb|AC102589.9| Mus musculus chromosome 8, clone RP23-334O19, complete sequence
          Length = 234829

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 446    ccatttgaatgattgtgattt 466
              |||||||||||||||||||||
Sbjct: 198343 ccatttgaatgattgtgattt 198363

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>gb|AC124515.4| Mus musculus BAC clone RP23-381E19 from chromosome 13, complete sequence
          Length = 175354

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 327    tatgtgtgtgttcttgtatgt 347
              |||||||||||||||||||||
Sbjct: 122718 tatgtgtgtgttcttgtatgt 122698

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>gb|AC110225.5| Mus musculus chromosome 7, clone RP24-324L10, complete sequence
          Length = 172802

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 435    tttggacctatccatttgaat 455
              |||||||||||||||||||||
Sbjct: 110554 tttggacctatccatttgaat 110574

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>gb|AC097273.3| Genomic sequence for Mus musculus, clone RP23-118N13, complete sequence
          Length = 211657

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    tatgtgtgtgttcttgtatgt 347
              |||||||||||||||||||||
Sbjct: 206365 tatgtgtgtgttcttgtatgt 206385

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>gb|AC006559.6| Homo sapiens 12p12 BAC RPCI11-501E24 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 179444

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 282    aagacatggctgctaatggtg 302
              |||||||||||||||||||||
Sbjct: 152525 aagacatggctgctaatggtg 152505

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>emb|Z73905.1|CEC32C4 Caenorhabditis elegans Cosmid C32C4, complete sequence
          Length = 31786

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 502   tgtttgttattgtattaaatt 522
             |||||||||||||||||||||
Sbjct: 17060 tgtttgttattgtattaaatt 17040

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>emb|CR723389.2|CNS0GL43 Tetraodon nigroviridis full-length cDNA
          Length = 1541

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 138 ggcgggggcgaccaccacggc 158
           |||||||||||||||||||||
Sbjct: 85  ggcgggggcgaccaccacggc 105

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 126      caggcggccggcggcgggggc 146
                |||||||||||||||||||||
Sbjct: 28052002 caggcggccggcggcgggggc 28052022

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>emb|AL365188.9| Human DNA sequence from clone RP4-806J12 on chromosome 1, complete
             sequence
          Length = 64491

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   aagacatggctgctaatggtg 302
             |||||||||||||||||||||
Sbjct: 54121 aagacatggctgctaatggtg 54141

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>emb|BX042514.1|CNS094YU Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC14CD03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 455

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 130 cggccggcggcgggggcgacc 150
           |||||||||||||||||||||
Sbjct: 282 cggccggcggcgggggcgacc 262

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>gb|U95372.1|HVU95372 Haloferax volcanii plasmid pHV3 aminotransferase gene, partial cds,
            dehydrogenase and hydantoinase genes, complete cds, and
            oligopeptide ABC transporter gene, partial cds
          Length = 8455

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 133  ccggcggcgggggcgaccaccacggcggc 161
            |||||||||||||||||| ||||| ||||
Sbjct: 5466 ccggcggcgggggcgacccccacgtcggc 5438

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>emb|AL603792.12| Mouse DNA sequence from clone RP23-328B4 on chromosome 11, complete
              sequence
          Length = 203030

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    tatgtgtgtgttcttgtatgt 347
              |||||||||||||||||||||
Sbjct: 196929 tatgtgtgtgttcttgtatgt 196949

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>ref|XM_001184176.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC759325 (LOC759325), mRNA
          Length = 2229

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 319 ttttctgatatgtgtgtgttcttg 342
           |||||||| |||||||||||||||
Sbjct: 784 ttttctgagatgtgtgtgttcttg 761

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>ref|XM_790763.2| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC591186
           (LOC591186), partial mRNA
          Length = 2079

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 319 ttttctgatatgtgtgtgttcttg 342
           |||||||| |||||||||||||||
Sbjct: 634 ttttctgagatgtgtgtgttcttg 611

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>ref|XM_001198897.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC591186
           (LOC591186), partial mRNA
          Length = 2079

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 319 ttttctgatatgtgtgtgttcttg 342
           |||||||| |||||||||||||||
Sbjct: 634 ttttctgagatgtgtgtgttcttg 611

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>ref|XM_001176179.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC752092 (LOC752092), mRNA
          Length = 2229

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 319 ttttctgatatgtgtgtgttcttg 342
           |||||||| |||||||||||||||
Sbjct: 784 ttttctgagatgtgtgtgttcttg 761

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>gb|AC184110.3| Pan troglodytes BAC clone CH251-83P9 from chromosome 2, complete
             sequence
          Length = 173411

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   acctatccatttgaatgatt 459
             ||||||||||||||||||||
Sbjct: 91861 acctatccatttgaatgatt 91842

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>gb|AC188173.2| Gallus gallus BAC clone TAM31-35O10 from chromosome z, complete sequence
          Length = 172802

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 134    cggcggcgggggcgaccaccacggcggc 161
              ||||||||| |||| |||||||||||||
Sbjct: 105988 cggcggcggcggcggccaccacggcggc 105961

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>ref|XM_001081131.1| PREDICTED: Rattus norvegicus similar to Vinculin (Metavinculin)
           (predicted) (RGD1561442_predicted), mRNA
          Length = 4371

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 caccacggcggccagtggtg 169
           ||||||||||||||||||||
Sbjct: 963 caccacggcggccagtggtg 944

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 128     ggcggccggcggcgggggcg 147
               ||||||||||||||||||||
Sbjct: 3024268 ggcggccggcggcgggggcg 3024287

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>ref|XM_986908.1| PREDICTED: Mus musculus similar to Vinculin CG3299-PA (LOC671420),
           mRNA
          Length = 4236

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 caccacggcggccagtggtg 169
           ||||||||||||||||||||
Sbjct: 876 caccacggcggccagtggtg 857

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>ref|XM_001004454.1| PREDICTED: Mus musculus similar to Vinculin CG3299-PA (LOC668894),
           mRNA
          Length = 4236

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 caccacggcggccagtggtg 169
           ||||||||||||||||||||
Sbjct: 876 caccacggcggccagtggtg 857

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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 310     gcttgatgcttttctgatat 329
               ||||||||||||||||||||
Sbjct: 1688069 gcttgatgcttttctgatat 1688050

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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 65      aaaaggaagccagccagaag 84
               ||||||||||||||||||||
Sbjct: 2066879 aaaaggaagccagccagaag 2066860

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>gb|AC111620.5| Rattus norvegicus 2 BAC CH230-123K4 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 59971

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 420   tgtttctgttaagcatttggacct 443
             ||||||||||||||||||| ||||
Sbjct: 46608 tgtttctgttaagcatttgaacct 46631

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>ref|XM_618120.2| PREDICTED: Bos taurus similar to zinc finger protein 650
           (LOC537932), mRNA
          Length = 7669

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 ggcggccggcggcgggggcg 147
           ||||||||||||||||||||
Sbjct: 225 ggcggccggcggcgggggcg 244

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>ref|XM_456052.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F21780g predicted mRNA
          Length = 393

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 328 atgtgtgtgttcttgtatgt 347
           ||||||||||||||||||||
Sbjct: 9   atgtgtgtgttcttgtatgt 28

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>gb|AC135104.22| Mus musculus strain C57BL/6J clone rp23-206l6, complete sequence
          Length = 198294

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 313    tgatgcttttctgatatgtgtgtg 336
              |||||||||||||| |||||||||
Sbjct: 163035 tgatgcttttctgaaatgtgtgtg 163012

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>gb|AC164589.6| Mus musculus chromosome 8, clone RP24-363C11, complete sequence
          Length = 197883

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   tgatatgtgtgtgttcttgt 343
             ||||||||||||||||||||
Sbjct: 13854 tgatatgtgtgtgttcttgt 13835

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>gb|AC102114.9| Mus musculus chromosome 10, clone RP23-139F20, complete sequence
          Length = 232173

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   cttttctgatatgtgtgtgt 337
             ||||||||||||||||||||
Sbjct: 81463 cttttctgatatgtgtgtgt 81444

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>gb|AC140227.7| Mus musculus BAC clone RP24-487N2 from chromosome 8, complete sequence
          Length = 188262

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   gaagacatggctgctaatgg 300
             ||||||||||||||||||||
Sbjct: 17176 gaagacatggctgctaatgg 17195

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>dbj|AK135841.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
            enriched library, clone:7420424M18 product:ring finger
            protein 33, full insert sequence
          Length = 2672

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 324  tgatatgtgtgtgttcttgt 343
            ||||||||||||||||||||
Sbjct: 2599 tgatatgtgtgtgttcttgt 2580

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 132     gccggcggcgggggcgacca 151
               ||||||||||||||||||||
Sbjct: 3847181 gccggcggcgggggcgacca 3847200

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>gb|AY063497.1| Mus musculus RING finger protein 35 (Rnf35) and RING finger protein 33
             (Rnf33) genes, complete cds
          Length = 22127

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   tgatatgtgtgtgttcttgt 343
             ||||||||||||||||||||
Sbjct: 19890 tgatatgtgtgtgttcttgt 19871

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>gb|AC093323.3| Homo sapiens BAC clone RP11-539L10 from 4, complete sequence
          Length = 195576

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 324  tgatatgtgtgtgttcttgtatgt 347
            |||||||||||||||| |||||||
Sbjct: 1561 tgatatgtgtgtgttcatgtatgt 1538

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>gb|AC069308.21| Mus musculus Strain C57BL6/J Chromosome 8 RP23-21B7, complete sequence
          Length = 239821

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   gaagacatggctgctaatgg 300
             ||||||||||||||||||||
Sbjct: 76116 gaagacatggctgctaatgg 76097

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>gb|AC090371.4| Homo sapiens chromosome 18, clone RP11-746B8, complete sequence
          Length = 173028

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 505    ttgttattgtattaaatttg 524
              ||||||||||||||||||||
Sbjct: 100486 ttgttattgtattaaatttg 100505

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>emb|AL671518.3| Human DNA sequence from clone RP11-315C6 on chromosome 6 Contains the
             5' end of the WASF1 gene for WAS protein family member 1,
             the gene for pre-mRNA splicing factor 17 (PRP17, EH
             binding protein 3, EHB3, CDC40), a novel gene and a CpG
             island, complete sequence
          Length = 67395

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 490   gagagtatgtgctgtttgtt 509
             ||||||||||||||||||||
Sbjct: 23114 gagagtatgtgctgtttgtt 23133

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>emb|AL360219.18| Human DNA sequence from clone RP11-131L23 on chromosome 1 Contains the
             3' end of a novel gene, part of the DDAH1 gene for
             dimethylarginine dimethylaminohydrolase 1 and a CpG
             island, complete sequence
          Length = 168953

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 118   caggcaaccaggcggccggcggcggggg 145
             ||||||||  ||||||||||||||||||
Sbjct: 74550 caggcaacacggcggccggcggcggggg 74577

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>emb|AL360155.11| Human DNA sequence from clone RP11-721G11 on chromosome 6 Contains a
             pseudogene similar to part of KIAA1925, complete sequence
          Length = 107908

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 504   tttgttattgtattaaattt 523
             ||||||||||||||||||||
Sbjct: 54633 tttgttattgtattaaattt 54614

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>emb|AL357569.12| Human DNA sequence from clone RP13-137O14 on chromosome X, complete
             sequence
          Length = 92522

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   cttttctgatatgtgtgtgt 337
             ||||||||||||||||||||
Sbjct: 20513 cttttctgatatgtgtgtgt 20532

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>emb|AL158091.31| Human DNA sequence from clone RP5-824A14 on chromosome 20 Contains the
             5' end of the BTBD4 gene for BTB (POZ) domain containing
             4, part of a gene for a tissue plasminogen activator
             protein and two CpG islands, complete sequence
          Length = 41932

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   ggcggccggcggcgggggcg 147
             ||||||||||||||||||||
Sbjct: 13752 ggcggccggcggcgggggcg 13771

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>emb|AL023754.1|HS272L16 Human DNA sequence from clone RP1-272L16 on chromosome 1q32.1-32.3
             Contains a novel gene, the CAMK1G gene for
             calcium/calmodulin-dependent protein kinase IG  and the 3'
             end of the LAMB3 gene for laminin beta 3, complete
             sequence
          Length = 157875

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   catggctgctaatggtgcct 305
             ||||||||||||||||||||
Sbjct: 99525 catggctgctaatggtgcct 99544

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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
               complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 129     gcggccggcggcgggggcga 148
               ||||||||||||||||||||
Sbjct: 1064037 gcggccggcggcgggggcga 1064018

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>gb|AY849318.1| Gallus gallus CD1.1 antigen (CD1.1) and CD1.2 antigen (CD1.2) genes,
            complete cds
          Length = 9107

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  ggcgaccaccacggcggcca 163
            ||||||||||||||||||||
Sbjct: 8833 ggcgaccaccacggcggcca 8852

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>gb|AC113295.5| Mus musculus chromosome 5, clone RP23-424M12, complete sequence
          Length = 239105

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 424    tctgttaagcatttggacct 443
              ||||||||||||||||||||
Sbjct: 120903 tctgttaagcatttggacct 120922

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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 328     atgtgtgtgttcttgtatgt 347
               ||||||||||||||||||||
Sbjct: 2029149 atgtgtgtgttcttgtatgt 2029168

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>gb|AC110556.15| Mus musculus chromosome 5, clone RP23-250G21, complete sequence
          Length = 214445

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 424  tctgttaagcatttggacct 443
            ||||||||||||||||||||
Sbjct: 3759 tctgttaagcatttggacct 3740

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>emb|BX927187.7| Zebrafish DNA sequence from clone DKEY-44L17 in linkage group 19,
             complete sequence
          Length = 127280

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 343   tatgtcttattgaacatcgaactatctatttt 374
             ||||| || |||||||||||||||||| ||||
Sbjct: 91518 tatgtatttttgaacatcgaactatctttttt 91487

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>gb|AC074087.4| Homo sapiens BAC clone RP11-26C10 from 4, complete sequence
          Length = 156083

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    tgtgttcttgtatgtcttat 352
              ||||||||||||||||||||
Sbjct: 100597 tgtgttcttgtatgtcttat 100616

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>gb|AF210312.1|AF210312 Azotobacter vinelandii beta-ketothiolase (bktA) and
            hydroxybutyryl-CoA dehydrogenase (hbdH) genes, complete
            cds
          Length = 2132

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 139  gcgggggcgaccaccacggcggcc 162
            ||||| ||||||||||||||||||
Sbjct: 1988 gcgggcgcgaccaccacggcggcc 1965

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>gb|AC114815.5| Homo sapiens BAC clone RP11-1369K4 from 4, complete sequence
          Length = 125402

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 324    tgatatgtgtgtgttcttgtatgt 347
              |||||||||||||||| |||||||
Sbjct: 124963 tgatatgtgtgtgttcatgtatgt 124940

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>gb|AC104651.2| Homo sapiens BAC clone RP11-217P16 from 2, complete sequence
          Length = 106954

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   acctatccatttgaatgatt 459
             ||||||||||||||||||||
Sbjct: 94260 acctatccatttgaatgatt 94241

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>ref|XM_230593.3| PREDICTED: Rattus norvegicus similar to Vinculin (Metavinculin)
           (predicted) (RGD1561442_predicted), mRNA
          Length = 4371

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 caccacggcggccagtggtg 169
           ||||||||||||||||||||
Sbjct: 963 caccacggcggccagtggtg 944

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>gb|AC108668.5| Homo sapiens 3 BAC CTD-2650N22 (Cal Tech Human BAC Library D) complete
             sequence
          Length = 78689

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 539   aagaaaatattgttgtcatt 558
             ||||||||||||||||||||
Sbjct: 57321 aagaaaatattgttgtcatt 57302

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>emb|BX005226.10| Zebrafish DNA sequence from clone CH211-175P12 in linkage group 22,
             complete sequence
          Length = 176642

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 495   tatgtgctgtttgttattgt 514
             ||||||||||||||||||||
Sbjct: 45171 tatgtgctgtttgttattgt 45190

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>ref|XM_309714.2| Anopheles gambiae str. PEST ENSANGP00000012581
           (ENSANGG00000010092), partial mRNA
          Length = 4743

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 gcggccggcggcgggggcga 148
           ||||||||||||||||||||
Sbjct: 631 gcggccggcggcgggggcga 650

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>emb|AJ323487.1|HSA323487 Homo sapiens genomic sequence surrounding NotI site, clone
           NB1-1068R
          Length = 812

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 ggcggccggcggcgggggcg 147
           ||||||||||||||||||||
Sbjct: 41  ggcggccggcggcgggggcg 22

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>ref|XM_917820.1| PREDICTED: Mus musculus similar to Vinculin CG3299-PA (LOC215539),
           mRNA
          Length = 4236

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 caccacggcggccagtggtg 169
           ||||||||||||||||||||
Sbjct: 876 caccacggcggccagtggtg 857

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>emb|BX005247.9| Mouse DNA sequence from clone RP23-377A17 on chromosome 4, complete
             sequence
          Length = 63139

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 327   tatgtgtgtgttcttgtatgtctt 350
             ||||||||||||| ||||||||||
Sbjct: 35426 tatgtgtgtgttcatgtatgtctt 35449

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>emb|AL645471.8| Mouse DNA sequence from clone RP23-456M3 on chromosome 11, complete
              sequence
          Length = 178361

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 313    tgatgcttttctgatatgtgtgtg 336
              |||||||||||||| |||||||||
Sbjct: 154775 tgatgcttttctgaaatgtgtgtg 154798

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>emb|AL833780.6| Mouse DNA sequence from clone RP23-24M22 on chromosome 2, complete
              sequence
          Length = 194630

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    caccacggcggccagtggtg 169
              ||||||||||||||||||||
Sbjct: 124443 caccacggcggccagtggtg 124462

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>gb|AC153695.2| Mus musculus  10 BAC RP23-184L5 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse 10 BAC Library) complete sequence
          Length = 209875

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   cttttctgatatgtgtgtgt 337
             ||||||||||||||||||||
Sbjct: 81920 cttttctgatatgtgtgtgt 81939

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>gb|M98813.1|BRPSERANT Brugia malayi antigen (SPX-1) mRNA, 3' end
          Length = 718

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 538 taagaaaatattgttgtcat 557
           ||||||||||||||||||||
Sbjct: 588 taagaaaatattgttgtcat 607


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 112,915,861
Number of extensions: 6221548
Number of successful extensions: 126907
Number of sequences better than 10.0: 68
Number of HSP's gapped: 126907
Number of HSP's successfully gapped: 68
Length of query: 575
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 553
Effective length of database: 18,508,616,841
Effective search space: 10235265113073
Effective search space used: 10235265113073
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result