ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf20p06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK100431:Os03g0243900 31 1.4
2Os06g0638000:Os06g0638000 27 2.7
3Os08g0190300:Os08g0190300 25 3.7
4Os08g0518300:Os08g0518300 28 8.8

>AK100431:Os03g0243900 |
          Length = 336
 Score = 31.2 bits (69), Expect = 1.4
 Identities = 18/33 (54%), Positives = 19/33 (57%)
 Frame = -1

Query: 1017 PTAAIESPANTGWRKGRGTTRDGSGQDGTGQSV 919
            P AA   PA TGW  GR   R G  QDGTG+ V
Sbjct: 58   PGAARAVPAPTGW-SGRLWARTGCTQDGTGKVV 89



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>Os06g0638000:Os06g0638000 |
          Length = 2068

 Score = 26.6 bits (57), Expect(2) = 2.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 732 HQRPWPDDASHPTHVGLTPSQHKIKPKLSTYHHHNHNR 845
           HQ   PD   H  H       H   P++  +HHH+H +
Sbjct: 55  HQYHLPDHHHHHHH-------HHPPPRVQHHHHHHHQQ 85



 Score = 21.9 bits (45), Expect(2) = 2.7
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +2

Query: 908 LPQPTLCPVPSCPLPS-RVVPLP 973
           LP PT  P P  PLP  R+ P P
Sbjct: 86  LPAPTPPPPPPPPLPQHRLEPPP 108



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>Os08g0190300:Os08g0190300 |
          Length = 1031

 Score = 25.0 bits (53), Expect(2) = 3.7
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +3

Query: 741 PWPDDASHPTHVGLTPSQHKIKPKLSTYHHHNHNRSQPQM 860
           PW       T    TP      P L  +HHH+H+   P +
Sbjct: 854 PWNPPPPETTTTPTTP------PPLQGHHHHHHHYLLPNL 887



 Score = 23.1 bits (48), Expect(2) = 3.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 661 GTVVPWTEPPRET 699
           G V PW  PP ET
Sbjct: 850 GRVAPWNPPPPET 862



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>Os08g0518300:Os08g0518300 |
          Length = 1755

 Score = 28.5 bits (62), Expect = 8.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 1087 VLYAAVCLRVCMCSLLVAIVLSLPNGSYRVSCEHGMAKG 971
            +L   V   + +C+L  +  + LP GS+ V+ EH +A G
Sbjct: 296  ILIPCVSGEIFVCNLTTSEFVELPRGSHSVALEHRVAFG 334


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 27,986,684
Number of extensions: 572882
Number of successful extensions: 2156
Number of sequences better than 10.0: 4
Number of HSP's gapped: 2135
Number of HSP's successfully gapped: 6
Length of query: 367
Length of database: 15,399,855
Length adjustment: 102
Effective length of query: 265
Effective length of database: 11,315,673
Effective search space: 2998653345
Effective search space used: 2998653345
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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