ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf20p06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P20130:V70K_OYMV 66 kDa protein - Ononis yellow mosaic virus 33 2.7
2P50222:MEOX2_HUMAN Homeobox protein MOX-2 - Homo sapiens (Human) 33 2.7
3O77086:C3G_DROME Guanine nucleotide-releasing factor 2 - Drosoph... 32 3.5
4Q3U564:DCP1B_MOUSE mRNA-decapping enzyme 1B - Mus musculus (Mouse) 32 4.6
5Q9GLL9:PROP1_PIG Homeobox protein prophet of Pit-1 - Sus scrofa ... 32 6.0

>P20130:V70K_OYMV 66 kDa protein - Ononis yellow mosaic virus|
          Length = 597
 Score = 32.7 bits (73), Expect = 2.7
 Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
 Frame = +3

Query: 696 DMSTPCLAPCHVH-QRPWPDDASHPTHV---GLTPSQHKIKPKLSTYHHHNHNRSQPQM* 863
           D + P L P  +H  RP   D      V   GL  S+     KL +  H    RS P   
Sbjct: 75  DRNLPSLQPLELHGDRPGLCDVHETLQVQKIGLRQSKLLRTSKLPS--HRGRFRSIPLHL 132

Query: 864 TCGG*VHDSQHSRDPYLSRRSVPSRPVHCRPVSSLSPFAIPCS 992
                V +  H+R P + +    +RP+H  P+SS +P    CS
Sbjct: 133 HLSSEVRNRFHARCPDVLQPLSDTRPLHSVPLSSEAPLQSSCS 175



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>P50222:MEOX2_HUMAN Homeobox protein MOX-2 - Homo sapiens (Human)|
          Length = 304

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 23/82 (28%), Positives = 33/82 (40%)
 Frame = +3

Query: 756  ASHPTHVGLTPSQHKIKPKLSTYHHHNHNRSQPQM*TCGG*VHDSQHSRDPYLSRRSVPS 935
            A +P   G+  SQH        +HHH+H+  Q Q        H  Q S  P  +R S+  
Sbjct: 51   AGYPNEEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCL 110

Query: 936  RPVHCRPVSSLSPFAIPCSQET 1001
            +P    P    S   + CS  +
Sbjct: 111  QPDSGGPPELGSSPPVLCSNSS 132



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>O77086:C3G_DROME Guanine nucleotide-releasing factor 2 - Drosophila melanogaster|
           (Fruit fly)
          Length = 1571

 Score = 32.3 bits (72), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 732 HQRPWPDDASHPTHVGLTPSQHKIKPKLSTYHHHNHNR 845
           ++ P+P  ASH  H      QH++       HHHNH+R
Sbjct: 39  NRNPYPSGASHDDH------QHQLHHHHHQQHHHNHHR 70



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>Q3U564:DCP1B_MOUSE mRNA-decapping enzyme 1B - Mus musculus (Mouse)|
          Length = 578

 Score = 32.0 bits (71), Expect = 4.6
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
 Frame = +3

Query: 735 QRPWPDDAS--HPTHVGLT---------PSQHKIKPKLSTYHHHNHNRSQPQ 857
           Q P P   S   P H+ LT         P Q  +KP  +  HHH+H+  Q Q
Sbjct: 209 QGPAPSKTSDPEPQHLSLTALFGKQDKAPCQETVKPSRTFAHHHHHHHQQQQ 260



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>Q9GLL9:PROP1_PIG Homeobox protein prophet of Pit-1 - Sus scrofa (Pig)|
          Length = 226

 Score = 31.6 bits (70), Expect = 6.0
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +2

Query: 890  STFA*SLPQPTLCP--VPSCPLPSRVVPLPFRHPV----FAGDSIAAVGQAEDY 1033
            +TF+  LP+P  CP   P+ P P    P P+ H +      G S A   Q+ED+
Sbjct: 141  ATFSGFLPEPPACPYSYPTPPPPMTCFPHPYNHALPSQPSTGGSFARHPQSEDW 194


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 164,344,016
Number of extensions: 3106176
Number of successful extensions: 9318
Number of sequences better than 10.0: 5
Number of HSP's gapped: 9199
Number of HSP's successfully gapped: 5
Length of query: 367
Length of database: 100,686,439
Length adjustment: 115
Effective length of query: 252
Effective length of database: 69,142,514
Effective search space: 17423913528
Effective search space used: 17423913528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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