ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf17n13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os02g24280:12002.t02125:unspliced-genomic Transposable e... 32 2.3
2LOC_Os05g30950:12005.t02693:unspliced-genomic MSP domain con... 32 3.2
3LOC_Os05g48050:12005.t04239:unspliced-genomic 39S ribosomal ... 31 4.4
4LOC_Os02g35470:12002.t03185:unspliced-genomic calmodulin bin... 28 5.9
5LOC_Os04g01890:12004.t00086:unspliced-genomic lectin-like pr... 31 6.1
6LOC_Os03g56800:12003.t04945:unspliced-genomic inosine-5-mono... 31 6.1
7LOC_Os02g02250:12002.t00125:unspliced-genomic expressed protein 31 6.1
8LOC_Os11g32810:12011.t02877:unspliced-genomic F-box domain c... 26 7.9
9LOC_Os05g07150:12005.t00604:unspliced-genomic hypothetical p... 30 8.3
10LOC_Os01g12390:12001.t01107:unspliced-genomic ATP binding pr... 30 8.3
11LOC_Os02g41890:12002.t03776:unspliced-genomic phytosulfokine... 24 9.9

>LOC_Os02g24280:12002.t02125:unspliced-genomic Transposable element protein, putative, MuDR|
          Length = 4762
 Score = 32.2 bits (64), Expect = 2.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3 / +3

                                         
Query: 372  CYHDQSMEPYEHCFGALFAANIWPSSISC 458
            C+    + PYEHC   +F   +W ++++C
Sbjct: 3084 CHAFNLLLPYEHCTNMVFNMQVWLNNMTC 3170



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>LOC_Os05g30950:12005.t02693:unspliced-genomic MSP domain containing protein, expressed|
          Length = 5644

 Score = 31.8 bits (63), Expect = 3.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1 / +2

                                    
Query: 196  WRWW*WCAVASYVCLWLRLTADIL 267
            WR  *W  VA Y CL++R  A +L
Sbjct: 1436 WRCV*WIQVALYACLYIRFEAFVL 1507



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>LOC_Os05g48050:12005.t04239:unspliced-genomic 39S ribosomal protein L12, mitochondrial precursor, putative,|
            expressed
          Length = 1804

 Score = 31.3 bits (62), Expect = 4.4
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1 / +1

                                                        
Query: 268  SWHDGTIHPICQLAYSRNLHFSRPVIVAFSCIRSFAIMTNLWNR 399
            SW DG     CQ  Y  N HF  P+I+  +     AIM  L+ R
Sbjct: 1315 SWFDG*CGLGCQC*YPVNWHFESPMILQHTGQSDGAIMCFLFGR 1446



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>LOC_Os02g35470:12002.t03185:unspliced-genomic calmodulin binding protein, putative, expressed|
          Length = 5198

 Score = 27.6 bits (54), Expect(2) = 5.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1 / +1

                                    
Query: 358  CIRSFAIMTNLWNRMNTVLELYLL 429
            C+R + + TN +N  +++L  YLL
Sbjct: 4096 CVRPYVMTTNCFNYYHSILLFYLL 4167



 Score = 24.4 bits (47), Expect(2) = 5.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1 / +3

                                    
Query: 202  WW*WCAVASYVCLWLRLTADILSW 273
            WW    + S +C  L  T  +L W
Sbjct: 3705 WWSLLLLCSLLCFCLAATFSLLCW 3776



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>LOC_Os04g01890:12004.t00086:unspliced-genomic lectin-like protein kinase, putative|
          Length = 1998

 Score = 30.9 bits (61), Expect = 6.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1 / -3

                    
Query: 196 WRWW*WCAV 222
           WRWW*WC++
Sbjct: 520 WRWW*WCSL 494



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>LOC_Os03g56800:12003.t04945:unspliced-genomic inosine-5-monophosphate dehydrogenase 2, putative, expressed|
          Length = 5533

 Score = 30.9 bits (61), Expect = 6.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1 / +1

                                                   
Query: 322  LHFSRPVIVAFSCIRSFAIMTNLWNRMNTVLELYLLLIF 438
            +HF  P ++ FSCI S  ++ N   ++  +  L +  +F
Sbjct: 1378 VHFGPPQVIFFSCIYSINVVKNYLRKLEKITGLRVADVF 1494



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>LOC_Os02g02250:12002.t00125:unspliced-genomic expressed protein|
          Length = 7469

 Score = 30.9 bits (61), Expect = 6.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1 / +1

                                              
Query: 340  VIVAFSCIRSFAIMTNLWNRMNTVLELYLLLIFG 441
            V+V    I  F  +  LW R NT++ +Y LLI G
Sbjct: 5347 VVVVVVIILFFFFLLFLWRRDNTLIWIYNLLILG 5448



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>LOC_Os11g32810:12011.t02877:unspliced-genomic F-box domain containing protein, expressed|
          Length = 3763

 Score = 26.3 bits (51), Expect(2) = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2 / +3

                                        
Query: 227  AMFVFGCG*LRIYFLGTMAPFIPSVNSL 310
            A F F CG    Y +  MAP +P++ +L
Sbjct: 1704 ARFQFSCGDAIEYAITEMAPALPNLETL 1787



 Score = 24.9 bits (48), Expect(2) = 7.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3 / +3

                          
Query: 369  FCYHDQSMEPYEHC 410
            +C+HD  +  Y HC
Sbjct: 3474 YCFHDSQVCGYNHC 3515



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>LOC_Os05g07150:12005.t00604:unspliced-genomic hypothetical protein|
          Length = 1843

 Score = 30.4 bits (60), Expect = 8.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1 / -1

                                         
Query: 244  LRLTADILSWHDGTIHPICQLAYSRNLHF 330
            L +  DI +W+D  I+  C L+ + NL+F
Sbjct: 1234 LGVAFDITAWYDSHINTSCSLSTASNLYF 1148



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>LOC_Os01g12390:12001.t01107:unspliced-genomic ATP binding protein, putative, expressed|
          Length = 3666

 Score = 30.4 bits (60), Expect = 8.3
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1 / +3

                                     
Query: 196 WRWW*WCAVASYVCLWLRLTADILSW 273
           WRWW WCA  S      R +     W
Sbjct: 243 WRWWWWCARLSRTRTGRRCSTSSRGW 320



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>LOC_Os02g41890:12002.t03776:unspliced-genomic phytosulfokine receptor precursor, putative, expressed|
          Length = 3612

 Score = 24.4 bits (47), Expect(2) = 9.9
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = +1 / +2

                            
Query: 196  WRWW*WCAVASYVCLW 243
            W WW W +V      W
Sbjct: 2537 WLWWLWSSVQGNTTRW 2584



 Score = 22.6 bits (43), Expect(2) = 9.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3 / +1

                             
Query: 270  LARWHHSSHLSTRLFQK 320
            LARW  SS    RL+QK
Sbjct: 2620 LARWSVSSKPRWRLYQK 2670


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 134,988,638
Number of extensions: 1676341
Number of successful extensions: 7181
Number of sequences better than 10.0: 11
Length of query: 158
Length of database: 55,613,886
Length adjustment: 47
Effective length of query: 111
Effective length of database: 52,968,820
Effective search space: 5879539020
Effective search space used: 5879539020
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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