| Clone Name | FLbaf17n13 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os02g24280:12002.t02125:unspliced-genomic Transposable element protein, putative, MuDR| Length = 4762 Score = 32.2 bits (64), Expect = 2.3 Identities = 9/29 (31%), Positives = 17/29 (58%) Frame = +3 / +3 Query: 372 CYHDQSMEPYEHCFGALFAANIWPSSISC 458 C+ + PYEHC +F +W ++++C Sbjct: 3084 CHAFNLLLPYEHCTNMVFNMQVWLNNMTC 3170
>LOC_Os05g30950:12005.t02693:unspliced-genomic MSP domain containing protein, expressed| Length = 5644 Score = 31.8 bits (63), Expect = 3.2 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 / +2 Query: 196 WRWW*WCAVASYVCLWLRLTADIL 267 WR *W VA Y CL++R A +L Sbjct: 1436 WRCV*WIQVALYACLYIRFEAFVL 1507
>LOC_Os05g48050:12005.t04239:unspliced-genomic 39S ribosomal protein L12, mitochondrial precursor, putative,| expressed Length = 1804 Score = 31.3 bits (62), Expect = 4.4 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +1 / +1 Query: 268 SWHDGTIHPICQLAYSRNLHFSRPVIVAFSCIRSFAIMTNLWNR 399 SW DG CQ Y N HF P+I+ + AIM L+ R Sbjct: 1315 SWFDG*CGLGCQC*YPVNWHFESPMILQHTGQSDGAIMCFLFGR 1446
>LOC_Os02g35470:12002.t03185:unspliced-genomic calmodulin binding protein, putative, expressed| Length = 5198 Score = 27.6 bits (54), Expect(2) = 5.9 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +1 / +1 Query: 358 CIRSFAIMTNLWNRMNTVLELYLL 429 C+R + + TN +N +++L YLL Sbjct: 4096 CVRPYVMTTNCFNYYHSILLFYLL 4167 Score = 24.4 bits (47), Expect(2) = 5.9 Identities = 8/24 (33%), Positives = 11/24 (45%) Frame = +1 / +3 Query: 202 WW*WCAVASYVCLWLRLTADILSW 273 WW + S +C L T +L W Sbjct: 3705 WWSLLLLCSLLCFCLAATFSLLCW 3776
>LOC_Os04g01890:12004.t00086:unspliced-genomic lectin-like protein kinase, putative| Length = 1998 Score = 30.9 bits (61), Expect = 6.1 Identities = 7/9 (77%), Positives = 9/9 (100%) Frame = +1 / -3 Query: 196 WRWW*WCAV 222 WRWW*WC++ Sbjct: 520 WRWW*WCSL 494
>LOC_Os03g56800:12003.t04945:unspliced-genomic inosine-5-monophosphate dehydrogenase 2, putative, expressed| Length = 5533 Score = 30.9 bits (61), Expect = 6.1 Identities = 11/39 (28%), Positives = 21/39 (53%) Frame = +1 / +1 Query: 322 LHFSRPVIVAFSCIRSFAIMTNLWNRMNTVLELYLLLIF 438 +HF P ++ FSCI S ++ N ++ + L + +F Sbjct: 1378 VHFGPPQVIFFSCIYSINVVKNYLRKLEKITGLRVADVF 1494
>LOC_Os02g02250:12002.t00125:unspliced-genomic expressed protein| Length = 7469 Score = 30.9 bits (61), Expect = 6.1 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 / +1 Query: 340 VIVAFSCIRSFAIMTNLWNRMNTVLELYLLLIFG 441 V+V I F + LW R NT++ +Y LLI G Sbjct: 5347 VVVVVVIILFFFFLLFLWRRDNTLIWIYNLLILG 5448
>LOC_Os11g32810:12011.t02877:unspliced-genomic F-box domain containing protein, expressed| Length = 3763 Score = 26.3 bits (51), Expect(2) = 7.9 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 / +3 Query: 227 AMFVFGCG*LRIYFLGTMAPFIPSVNSL 310 A F F CG Y + MAP +P++ +L Sbjct: 1704 ARFQFSCGDAIEYAITEMAPALPNLETL 1787 Score = 24.9 bits (48), Expect(2) = 7.9 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = +3 / +3 Query: 369 FCYHDQSMEPYEHC 410 +C+HD + Y HC Sbjct: 3474 YCFHDSQVCGYNHC 3515
>LOC_Os05g07150:12005.t00604:unspliced-genomic hypothetical protein| Length = 1843 Score = 30.4 bits (60), Expect = 8.3 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 / -1 Query: 244 LRLTADILSWHDGTIHPICQLAYSRNLHF 330 L + DI +W+D I+ C L+ + NL+F Sbjct: 1234 LGVAFDITAWYDSHINTSCSLSTASNLYF 1148
>LOC_Os01g12390:12001.t01107:unspliced-genomic ATP binding protein, putative, expressed| Length = 3666 Score = 30.4 bits (60), Expect = 8.3 Identities = 10/26 (38%), Positives = 11/26 (42%) Frame = +1 / +3 Query: 196 WRWW*WCAVASYVCLWLRLTADILSW 273 WRWW WCA S R + W Sbjct: 243 WRWWWWCARLSRTRTGRRCSTSSRGW 320
>LOC_Os02g41890:12002.t03776:unspliced-genomic phytosulfokine receptor precursor, putative, expressed| Length = 3612 Score = 24.4 bits (47), Expect(2) = 9.9 Identities = 6/16 (37%), Positives = 7/16 (43%) Frame = +1 / +2 Query: 196 WRWW*WCAVASYVCLW 243 W WW W +V W Sbjct: 2537 WLWWLWSSVQGNTTRW 2584 Score = 22.6 bits (43), Expect(2) = 9.9 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +3 / +1 Query: 270 LARWHHSSHLSTRLFQK 320 LARW SS RL+QK Sbjct: 2620 LARWSVSSKPRWRLYQK 2670 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 134,988,638 Number of extensions: 1676341 Number of successful extensions: 7181 Number of sequences better than 10.0: 11 Length of query: 158 Length of database: 55,613,886 Length adjustment: 47 Effective length of query: 111 Effective length of database: 52,968,820 Effective search space: 5879539020 Effective search space used: 5879539020 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)