ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf20l18 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT827959.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0303G06, complete sequence Length = 108846 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 577 taatgatctgagaaagaaagggctttgcttggtccctctctccatgttgatagattacct 636 |||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 20002 taatgagctgaggaagaaagggctctgcttggtccctctctccatgttgataaattacct 20061 Query: 637 aggttgatt 645 || ||||| Sbjct: 20062 cggatgatt 20070 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 138 cgtcgtccatgtcggccggcgagagcagctgggcgatgcactttgcaaacttcgtggcat 197 ||||||||||||| || || ||||||||||||||||||||| |||| |||||| |||||| Sbjct: 19353 cgtcgtccatgtcagctggagagagcagctgggcgatgcacattgcgaacttcttggcat 19412 Query: 198 caacagacaacagacaggagatg 220 || | ||||||| ||||||||| Sbjct: 19413 caccgtacaacagccaggagatg 19435 Score = 54.0 bits (27), Expect = 7e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 341 gacgatgaggatgattctctgcaggacactgcttgttcctccgcagctcgccctaaggt 399 |||||||| |||||||| ||||||||||||| ||||| || |||||| ||||||||| Sbjct: 19550 gacgatgacgatgattccttgcaggacactgcctgttcttctgcagctgcccctaaggt 19608
>emb|CT827955.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0117N13, complete sequence Length = 105220 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 577 taatgatctgagaaagaaagggctttgcttggtccctctctccatgttgatagattacct 636 |||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 62495 taatgagctgaggaagaaagggctctgcttggtccctctctccatgttgataaattacct 62554 Query: 637 aggttgatt 645 || ||||| Sbjct: 62555 cggatgatt 62563 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 138 cgtcgtccatgtcggccggcgagagcagctgggcgatgcactttgcaaacttcgtggcat 197 ||||||||||||| || || ||||||||||||||||||||| |||| |||||| |||||| Sbjct: 61846 cgtcgtccatgtcagctggagagagcagctgggcgatgcacattgcgaacttcttggcat 61905 Query: 198 caacagacaacagacaggagatg 220 || | ||||||| ||||||||| Sbjct: 61906 caccgtacaacagccaggagatg 61928 Score = 54.0 bits (27), Expect = 7e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 341 gacgatgaggatgattctctgcaggacactgcttgttcctccgcagctcgccctaaggt 399 |||||||| |||||||| ||||||||||||| ||||| || |||||| ||||||||| Sbjct: 62043 gacgatgacgatgattccttgcaggacactgcctgttcttctgcagctgcccctaaggt 62101
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 577 taatgatctgagaaagaaagggctttgcttggtccctctctccatgttgatagattacct 636 |||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 31967491 taatgagctgaggaagaaagggctctgcttggtccctctctccatgttgataaattacct 31967550 Query: 637 aggttgatt 645 || ||||| Sbjct: 31967551 cggatgatt 31967559 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 138 cgtcgtccatgtcggccggcgagagcagctgggcgatgcactttgcaaacttcgtggcat 197 ||||||||||||| || || ||||||||||||||||||||| |||| |||||| |||||| Sbjct: 31966842 cgtcgtccatgtcagctggagagagcagctgggcgatgcacattgcgaacttcttggcat 31966901 Query: 198 caacagacaacagacaggagatg 220 || | ||||||| ||||||||| Sbjct: 31966902 caccgtacaacagccaggagatg 31966924 Score = 54.0 bits (27), Expect = 7e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 341 gacgatgaggatgattctctgcaggacactgcttgttcctccgcagctcgccctaaggt 399 |||||||| |||||||| ||||||||||||| ||||| || |||||| ||||||||| Sbjct: 31967039 gacgatgacgatgattccttgcaggacactgcctgttcttctgcagctgcccctaaggt 31967097 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 gatgaagacgatgaggatgat 355 ||||||||||||||||||||| Sbjct: 1477838 gatgaagacgatgaggatgat 1477858
>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08, complete sequence Length = 166951 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 577 taatgatctgagaaagaaagggctttgcttggtccctctctccatgttgatagattacct 636 |||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 140357 taatgagctgaggaagaaagggctctgcttggtccctctctccatgttgataaattacct 140416 Query: 637 aggttgatt 645 || ||||| Sbjct: 140417 cggatgatt 140425 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 138 cgtcgtccatgtcggccggcgagagcagctgggcgatgcactttgcaaacttcgtggcat 197 ||||||||||||| || || ||||||||||||||||||||| |||| |||||| |||||| Sbjct: 139708 cgtcgtccatgtcagctggagagagcagctgggcgatgcacattgcgaacttcttggcat 139767 Query: 198 caacagacaacagacaggagatg 220 || | ||||||| ||||||||| Sbjct: 139768 caccgtacaacagccaggagatg 139790 Score = 54.0 bits (27), Expect = 7e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 341 gacgatgaggatgattctctgcaggacactgcttgttcctccgcagctcgccctaaggt 399 |||||||| |||||||| ||||||||||||| ||||| || |||||| ||||||||| Sbjct: 139905 gacgatgacgatgattccttgcaggacactgcctgttcttctgcagctgcccctaaggt 139963
>ref|NM_001060488.1| Oryza sativa (japonica cultivar-group) Os04g0627300 (Os04g0627300) mRNA, complete cds Length = 552 Score = 87.7 bits (44), Expect = 5e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 577 taatgatctgagaaagaaagggctttgcttggtccctctctccatgttgatagattacct 636 |||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 486 taatgagctgaggaagaaagggctctgcttggtccctctctccatgttgataaattacct 545 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 138 cgtcgtccatgtcggccggcgagagcagctgggcgatgcactttgcaaacttcgtggcat 197 ||||||||||||| || || ||||||||||||||||||||| |||| |||||| |||||| Sbjct: 53 cgtcgtccatgtcagctggagagagcagctgggcgatgcacattgcgaacttcttggcat 112 Query: 198 caacagacaacagacaggagatg 220 || | ||||||| ||||||||| Sbjct: 113 caccgtacaacagccaggagatg 135 Score = 54.0 bits (27), Expect = 7e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 341 gacgatgaggatgattctctgcaggacactgcttgttcctccgcagctcgccctaaggta 400 |||||||| |||||||| ||||||||||||| ||||| || |||||| ||||||| || Sbjct: 250 gacgatgacgatgattccttgcaggacactgcctgttcttctgcagctgcccctaagtta 309 Query: 401 accagca 407 || |||| Sbjct: 310 actagca 316
>gb|DQ244249.1| Zea mays clone 3870 mRNA sequence Length = 738 Score = 58.0 bits (29), Expect = 5e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 584 ctgagaaagaaagggctttgcttggtccctctctccatgttgata 628 ||||| |||| ||||||||||||||||||| |||| ||||||||| Sbjct: 606 ctgaggaagagagggctttgcttggtccctatctctatgttgata 650
>gb|CP000384.1| Mycobacterium sp. MCS, complete genome Length = 5705448 Score = 50.1 bits (25), Expect = 0.011 Identities = 34/37 (91%) Strand = Plus / Plus Query: 129 cgtcggcggcgtcgtccatgtcggccggcgagagcag 165 ||||||||| | |||||| |||||||||||||||||| Sbjct: 3444703 cgtcggcggtgacgtccacgtcggccggcgagagcag 3444739
>ref|XM_380809.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00633.1) partial mRNA Length = 11976 Score = 50.1 bits (25), Expect = 0.011 Identities = 25/25 (100%) Strand = Plus / Plus Query: 330 tcatggatgaagacgatgaggatga 354 ||||||||||||||||||||||||| Sbjct: 7271 tcatggatgaagacgatgaggatga 7295
>emb|BX511184.11| Zebrafish DNA sequence from clone DKEY-103A3 in linkage group 24, complete sequence Length = 209735 Score = 50.1 bits (25), Expect = 0.011 Identities = 25/25 (100%) Strand = Plus / Minus Query: 235 agaagcctctgaaagtgatttctcc 259 ||||||||||||||||||||||||| Sbjct: 106018 agaagcctctgaaagtgatttctcc 105994
>gb|BC051644.1| Mus musculus tumor rejection antigen P1A, mRNA (cDNA clone MGC:60563 IMAGE:30022193), complete cds Length = 986 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 ggatgaagacgatgaggatgat 355 |||||||||||||||||||||| Sbjct: 316 ggatgaagacgatgaggatgat 337
>gb|AC129772.3| Mus musculus BAC clone RP24-491D10 from chromosome 10, complete sequence Length = 160317 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Minus Query: 242 tctgaaagtgatttctcctctg 263 |||||||||||||||||||||| Sbjct: 89533 tctgaaagtgatttctcctctg 89512
>gb|AC129325.4| Mus musculus BAC clone RP23-255J24 from 1, complete sequence Length = 194106 Score = 44.1 bits (22), Expect = 0.70 Identities = 25/26 (96%) Strand = Plus / Plus Query: 254 ttctcctctggcttctcttcctcatt 279 |||||||||| ||||||||||||||| Sbjct: 78421 ttctcctctgacttctcttcctcatt 78446
>dbj|AK146737.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920048G10 product:tumor rejection antigen P1A, full insert sequence Length = 989 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 ggatgaagacgatgaggatgat 355 |||||||||||||||||||||| Sbjct: 338 ggatgaagacgatgaggatgat 359
>dbj|AK044338.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930008C08 product:unclassifiable, full insert sequence Length = 3720 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Minus Query: 242 tctgaaagtgatttctcctctg 263 |||||||||||||||||||||| Sbjct: 1237 tctgaaagtgatttctcctctg 1216
>gb|AC153653.4| Mus musculus BAC clone RP23-454L5 from 1, complete sequence Length = 180403 Score = 44.1 bits (22), Expect = 0.70 Identities = 25/26 (96%) Strand = Plus / Minus Query: 254 ttctcctctggcttctcttcctcatt 279 |||||||||| ||||||||||||||| Sbjct: 139618 ttctcctctgacttctcttcctcatt 139593
>emb|BX001035.6| Mouse DNA sequence from clone RP23-50M18 on chromosome X, complete sequence Length = 46349 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Minus Query: 65 ttccagtttctcatacacatgg 86 |||||||||||||||||||||| Sbjct: 11146 ttccagtttctcatacacatgg 11125
>emb|AL714027.8| Mouse DNA sequence from clone RP23-96E23 on chromosome X, complete sequence Length = 175809 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 ggatgaagacgatgaggatgat 355 |||||||||||||||||||||| Sbjct: 96880 ggatgaagacgatgaggatgat 96901
>ref|NM_011635.1| Mus musculus tumor rejection antigen P1A (Trap1a), mRNA gb|M36387.1|MUSTRAB Mouse tumor rejection antigen P815A mRNA, complete cds Length = 1174 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 ggatgaagacgatgaggatgat 355 |||||||||||||||||||||| Sbjct: 523 ggatgaagacgatgaggatgat 544
>gb|M36386.1|MUSTRAA Mouse tumor rejection antigen P815A gene, complete cds Length = 6149 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Plus Query: 334 ggatgaagacgatgaggatgat 355 |||||||||||||||||||||| Sbjct: 1630 ggatgaagacgatgaggatgat 1651
>ref|XM_001133539.1| PREDICTED: Homo sapiens hypothetical protein LOC732427 (LOC732427), mRNA Length = 432 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 gatgaagacgatgaggatgat 355 ||||||||||||||||||||| Sbjct: 91 gatgaagacgatgaggatgat 111
>ref|XM_001128774.1| PREDICTED: Homo sapiens hypothetical protein LOC728907 (LOC728907), mRNA Length = 984 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 gatgaagacgatgaggatgat 355 ||||||||||||||||||||| Sbjct: 169 gatgaagacgatgaggatgat 189
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 cggcgtcgtccatgtcggccggcga 159 |||||||||| |||||||||||||| Sbjct: 5524066 cggcgtcgtcgatgtcggccggcga 5524090
>gb|AY693231.1| Saccharomyces cerevisiae clone FLH113818.01X YPR075C gene, complete cds Length = 1083 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 gatgaagacgatgaggatgat 355 ||||||||||||||||||||| Sbjct: 457 gatgaagacgatgaggatgat 477
>gb|AC121361.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009E21, complete sequence Length = 153214 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 296 ggctccgacaccgactccttcctca 320 ||||||||| ||||||||||||||| Sbjct: 125430 ggctccgactccgactccttcctca 125406
>gb|AC108503.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1387_F08, complete sequence Length = 141535 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 296 ggctccgacaccgactccttcctca 320 ||||||||| ||||||||||||||| Sbjct: 79681 ggctccgactccgactccttcctca 79657
>gb|AC144817.3| Mus musculus BAC clone RP24-265M7 from chromosome 10, complete sequence Length = 141466 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ctggccaagtatttcctcgat 490 ||||||||||||||||||||| Sbjct: 38754 ctggccaagtatttcctcgat 38774
>gb|AC133099.3| Mus musculus BAC clone RP23-90K8 from chromosome 19, complete sequence Length = 224638 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 ggatgaagacgatgaggatga 354 ||||||||||||||||||||| Sbjct: 100585 ggatgaagacgatgaggatga 100605
>gb|U51033.2|YSCP9513 Saccharomyces cerevisiae chromosome XVI cosmid 9513 Length = 44455 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 gatgaagacgatgaggatgat 355 ||||||||||||||||||||| Sbjct: 12179 gatgaagacgatgaggatgat 12159
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 ggatgaagacgatgaggatga 354 ||||||||||||||||||||| Sbjct: 248579 ggatgaagacgatgaggatga 248599
>gb|AC159330.9| Mus musculus 10 BAC RP23-91L18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224664 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ctggccaagtatttcctcgat 490 ||||||||||||||||||||| Sbjct: 107821 ctggccaagtatttcctcgat 107801
>gb|AC127343.3| Mus musculus BAC clone RP23-194I18 from chromosome 10, complete sequence Length = 198624 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ctggccaagtatttcctcgat 490 ||||||||||||||||||||| Sbjct: 20890 ctggccaagtatttcctcgat 20870
>ref|XM_707379.1| Candida albicans SC5314 hypothetical protein (MDM12) partial mRNA Length = 1287 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 ggatgaagacgatgaggatga 354 ||||||||||||||||||||| Sbjct: 327 ggatgaagacgatgaggatga 347
>dbj|AK148310.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370086F19 product:hypothetical EGF-like domain containing protein, full insert sequence Length = 3798 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ctggccaagtatttcctcgat 490 ||||||||||||||||||||| Sbjct: 2903 ctggccaagtatttcctcgat 2883
>dbj|AK163997.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330048K22 product:hypothetical protein, full insert sequence Length = 4481 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ctggccaagtatttcctcgat 490 ||||||||||||||||||||| Sbjct: 2902 ctggccaagtatttcctcgat 2882
>ref|NM_059426.2| Caenorhabditis elegans F26B1.1 (F26B1.1) mRNA, complete cds Length = 915 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 tgaagacgatgaggatgattc 357 ||||||||||||||||||||| Sbjct: 270 tgaagacgatgaggatgattc 290
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 296 ggctccgacaccgactccttcctca 320 ||||||||| ||||||||||||||| Sbjct: 22770231 ggctccgactccgactccttcctca 22770207
>emb|AL008728.1|HS125N5 Human DNA sequence from clone RP1-125N5 on chromosome 6q26-27 Contains the 3' end of a variant of the gene for smooth muscle cell associated protein 2 (SMAP2) or secreted modular calcium binding protein 2 (SMOC2), a novel gene and a CpG island, complete sequence Length = 84126 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 gatgaagacgatgaggatgat 355 ||||||||||||||||||||| Sbjct: 44287 gatgaagacgatgaggatgat 44307
>emb|BX842606.1|OSJN00297 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1292H11, complete sequence Length = 152632 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 gatgaagacgatgaggatgat 355 ||||||||||||||||||||| Sbjct: 136862 gatgaagacgatgaggatgat 136882
>gb|AC159136.7| Mus musculus 10 BAC RP23-58L22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207997 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ctggccaagtatttcctcgat 490 ||||||||||||||||||||| Sbjct: 10563 ctggccaagtatttcctcgat 10583
>dbj|AB078884.1| Coturnix japonica DNA, major histocompatibility complex region Length = 155564 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 gatgaagacgatgaggatgat 355 ||||||||||||||||||||| Sbjct: 104787 gatgaagacgatgaggatgat 104767
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2, fertilization-independent endosperm proteins, hypothetical protein, putative non-LTR retroelement reverse transcriptase, OCL5 protein, tryptophan synthase beta-subunit, hypothetical proteins, putative AP endonuclease, putative RNA polymerase II complex component SRB7, putative beta-1,3-glucanase, hypothetical protein, TNP2-like protein, hypothetical protein, putative phosphate/phosphoenolpyruvate translocator, putative protein, hypothetical proteins, putative galactosyltransferase family, hypothetical protein, putative cytochrome P450 family, putative lipid transfer protein, putative photoreceptor-interacting protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds Length = 202197 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 585 tgagaaagaaagggctttgcttggtccct 613 ||||||||||||| || |||||||||||| Sbjct: 41855 tgagaaagaaaggcctctgcttggtccct 41827
>ref|XM_883650.1| Candida albicans SC5314 hypothetical protein (CaJ7.0134) partial mRNA Length = 1287 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 ggatgaagacgatgaggatga 354 ||||||||||||||||||||| Sbjct: 327 ggatgaagacgatgaggatga 347
>emb|BX005185.5| Zebrafish DNA sequence from clone CH211-132N11 in linkage group 24, complete sequence Length = 164521 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 235 agaagcctctgaaagtgatttctcc 259 |||||||| |||||||||||||||| Sbjct: 133584 agaagcctttgaaagtgatttctcc 133560
>gb|AF016263.1|AF016263 Saccharomyces cerevisiae overproduction induced pheromone resistant yeast 2 (OPY2) mRNA, complete cds Length = 1083 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 gatgaagacgatgaggatgat 355 ||||||||||||||||||||| Sbjct: 457 gatgaagacgatgaggatgat 477
>emb|AL132975.1|ATT22E16 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16 Length = 103240 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 265 cttctcttcctcatttgattccttg 289 ||||||||||| ||||||||||||| Sbjct: 65603 cttctcttcctaatttgattccttg 65579
>gb|U80444.1| Caenorhabditis elegans cosmid F26B1, complete sequence Length = 24225 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 tgaagacgatgaggatgattc 357 ||||||||||||||||||||| Sbjct: 19120 tgaagacgatgaggatgattc 19140
>gb|AC170753.7| Mus musculus BAC RP24-547D11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 234156 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ctggccaagtatttcctcgat 490 ||||||||||||||||||||| Sbjct: 139381 ctggccaagtatttcctcgat 139361 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 132,311,382 Number of extensions: 7553504 Number of successful extensions: 163385 Number of sequences better than 10.0: 47 Number of HSP's gapped: 163385 Number of HSP's successfully gapped: 58 Length of query: 733 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 711 Effective length of database: 18,508,616,841 Effective search space: 13159626573951 Effective search space used: 13159626573951 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
