ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf15e18 |
|---|---|
| Clone Library Name | barley_pub |
>Q6PAL8:RA6I1_MOUSE Rab6-interacting protein 1 - Mus musculus (Mouse)| Length = 1287 Score = 68.6 bits (166), Expect = 9e-11 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 14/146 (9%) Frame = +2 Query: 890 VCRALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRK 1069 V L +E++ LFT LLE QI++ + L + +I ++ PFQWQ + +P+LP Sbjct: 289 VFELLGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPAS 348 Query: 1070 LIDFIDAPVPFIAGIQHKPPDIKMK-----ASSLVRINVQKDQVK-ANLLPQLPRYKDLV 1231 L+ F+DAPVP++ G+ D + K ++L ++V ++ LPQ P + V Sbjct: 349 LLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDVDNHFIELPEDLPQFPNKLEFV 408 Query: 1232 SDLS--------PIHSRLSCEDALAK 1285 ++S P L C ++ +K Sbjct: 409 QEVSEILMAFGVPPEGNLHCSESASK 434 Score = 32.3 bits (72), Expect = 7.1 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +2 Query: 1307 NEVQVSLLLKDSFIDSFPSKDRPFMKLFVETQMFSVLSDSRLATFENE 1450 N Q+ K SF+ P PF+ F+ETQMF+ D+++ +++ Sbjct: 548 NREQMQNFDKASFLSDQPEPYLPFLSRFLETQMFASFIDNKIMCHDDD 595
>Q6IQ26:RA6I1_HUMAN Rab6-interacting protein 1 - Homo sapiens (Human)| Length = 1287 Score = 68.2 bits (165), Expect = 1e-10 Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 14/146 (9%) Frame = +2 Query: 890 VCRALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRK 1069 V L +E++ LFT LLE QI++ + L + +I ++ PFQWQ + +P+LP Sbjct: 289 VFELLGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPAS 348 Query: 1070 LIDFIDAPVPFIAGIQHKPPDIKMK-----ASSLVRINVQKDQVK-ANLLPQLPRYKDLV 1231 L+ F+DAPVP++ G+ D + K ++L +++ ++ LPQ P + V Sbjct: 349 LLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDIDNHFIELPEDLPQFPNKLEFV 408 Query: 1232 SDLS--------PIHSRLSCEDALAK 1285 ++S P L C ++ +K Sbjct: 409 QEVSEILMAFGIPPEGNLHCSESASK 434 Score = 32.3 bits (72), Expect = 7.1 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +2 Query: 1307 NEVQVSLLLKDSFIDSFPSKDRPFMKLFVETQMFSVLSDSRLATFENE 1450 N Q+ K SF+ P PF+ F+ETQMF+ D+++ +++ Sbjct: 548 NREQMQNFDKASFLSDQPEPYLPFLSRFLETQMFASFIDNKIMCHDDD 595
>Q924W7:ST5_MOUSE Suppression of tumorigenicity 5 - Mus musculus (Mouse)| Length = 1134 Score = 66.6 bits (161), Expect = 3e-10 Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 33/203 (16%) Frame = +2 Query: 902 LSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKLIDF 1081 LS+ ++ +F +LLE++++ + L LS+ +++ ++ PF WQ +PVLP +ID Sbjct: 878 LSVRQLIRIFASLLLERRVIFVADKLSTLSSCSHAVVALLYPFSWQHTFIPVLPASMIDI 937 Query: 1082 IDAPVPFIAGIQHKP-PDIK-MKASSLVRINVQKDQV------KANLLPQ---------L 1210 + P PF+ G+ P +K + + +N+ D+ + LLP+ L Sbjct: 938 VCCPTPFLVGLLSSSLPKLKELPVEEALMVNLGSDRFIRQMDDEDTLLPRKLQAALEQAL 997 Query: 1211 PRYKDLVSDLSPIHSRLSCEDALAKKHPMYKCNEVQV----SLLL-----------KDSF 1345 R +L+S S S C ++ V+ SL L +++F Sbjct: 998 ERKSELISQDSDSDSDDECNTLNGLVSEVFIRFFVETVGHYSLFLTHSEKGERAFQREAF 1057 Query: 1346 IDSFPSKD-RPFMKLFVETQMFS 1411 S SK R F+++F+E+QMF+ Sbjct: 1058 RKSVASKSIRRFLEVFMESQMFA 1080
>P78524:ST5_HUMAN Suppression of tumorigenicity 5 - Homo sapiens (Human)| Length = 1137 Score = 66.6 bits (161), Expect = 3e-10 Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 33/203 (16%) Frame = +2 Query: 902 LSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKLIDF 1081 LS+ ++ +F +LLE++++ + L LS+ +++ ++ PF WQ +PVLP +ID Sbjct: 881 LSVRQLIRIFASLLLERRVIFVADKLSTLSSCSHAVVALLYPFSWQHTFIPVLPASMIDI 940 Query: 1082 IDAPVPFIAGIQHKP-PDIK-MKASSLVRINVQKDQV------KANLLPQ---------L 1210 + P PF+ G+ P +K + + +N+ D+ + LLP+ L Sbjct: 941 VCCPTPFLVGLLSSSLPKLKELPVEEALMVNLGSDRFIRQMDDEDTLLPRKLQAALEQAL 1000 Query: 1211 PRYKDLVSDLSPIHSRLSCEDALAKKHPMYKCNEVQV----SLLL-----------KDSF 1345 R +L+S S S C ++ V+ SL L +++F Sbjct: 1001 ERKNELISQDSDSDSDDECNTLNGLVSEVFIRFFVETVGHYSLFLTQSEKGERAFQREAF 1060 Query: 1346 IDSFPSKD-RPFMKLFVETQMFS 1411 S SK R F+++F+E+QMF+ Sbjct: 1061 RKSVASKSIRRFLEVFMESQMFA 1083
>Q8TEH3:DEN1A_HUMAN DENN domain-containing protein 1A - Homo sapiens (Human)| Length = 1009 Score = 65.5 bits (158), Expect = 8e-10 Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 19/218 (8%) Frame = +2 Query: 899 ALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKLID 1078 A+ + +ML L+ +L E++I++IC L L+A + M+ P WQ + +PVLP L+D Sbjct: 178 AVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLD 237 Query: 1079 FIDAPVPFIAGIQHKPPD--IKMKASSLVRINVQKDQVKANL--LPQLPRYKDLVSDLSP 1246 + AP+P++ GI + M +V +NV + ++ L LP D++S L Sbjct: 238 YCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVDTNTLETPFDDLQSLP--NDVISSLKN 295 Query: 1247 IHSRLSCE--DALAKK------------HPMYKCNEVQVSLLLKDSFIDSFPS-KDRPFM 1381 ++S D +A+ K + +++F+ + S R F+ Sbjct: 296 RLKKVSTTTGDGVARAFLKAQAAFFGSYRNALKIEPEEPITFCEEAFVSHYRSGAMRQFL 355 Query: 1382 KLFVETQMFSVLSDSRLATFENEHTRGFASAGDQNMNL 1495 + + Q+F D RL + GF+ ++ +N+ Sbjct: 356 QNATQLQLFKQFIDGRLDLLNS--GEGFSDVFEEEINM 391
>Q8K382:DEN1A_MOUSE DENN domain-containing protein 1A - Mus musculus (Mouse)| Length = 1016 Score = 63.9 bits (154), Expect = 2e-09 Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 19/218 (8%) Frame = +2 Query: 899 ALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKLID 1078 A+ + +ML L+ +L E++I++IC L L+A + M+ P WQ + +PVLP L+D Sbjct: 178 AVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLD 237 Query: 1079 FIDAPVPFIAGIQHKPPD--IKMKASSLVRINVQKDQVKANL--LPQLPRYKDLVSDLSP 1246 + AP+P++ GI + M +V +NV + ++ L LP D++S L Sbjct: 238 YCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVDTNTLETPFDDLQSLP--NDVISSLKN 295 Query: 1247 IHSRLSCE--DALAKK------------HPMYKCNEVQVSLLLKDSFIDSFPS-KDRPFM 1381 ++S D +A+ K + +++F+ + S + F+ Sbjct: 296 RLKKVSTTTGDGVARAFLKAQAAFFGSYRNALKIEPEEPITFSEEAFVSHYRSGAMKQFL 355 Query: 1382 KLFVETQMFSVLSDSRLATFENEHTRGFASAGDQNMNL 1495 + + Q+F D RL + GF+ ++ +N+ Sbjct: 356 QNATQLQLFKQFIDGRLDLLNS--GEGFSDVFEEEINM 391
>Q8C4S8:DEN2A_MOUSE DENN domain-containing protein 2A - Mus musculus (Mouse)| Length = 1000 Score = 61.6 bits (148), Expect = 1e-08 Identities = 25/72 (34%), Positives = 46/72 (63%) Frame = +2 Query: 899 ALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKLID 1078 +LS+ ++++F +LLE++++ I L LS +++ +I PF WQ +PVLP +ID Sbjct: 742 SLSVRHLVSVFASLLLERRVIFIADKLSTLSKCCHAMVALIYPFSWQHTYIPVLPPAMID 801 Query: 1079 FIDAPVPFIAGI 1114 + +P PF+ G+ Sbjct: 802 IVCSPTPFLIGL 813
>Q9ULE3:DEN2A_HUMAN DENN domain-containing protein 2A - Homo sapiens (Human)| Length = 1009 Score = 61.6 bits (148), Expect = 1e-08 Identities = 24/72 (33%), Positives = 46/72 (63%) Frame = +2 Query: 899 ALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKLID 1078 +LS+ ++ +F +LLE++++ I L +LS +++ +I PF WQ +PVLP ++D Sbjct: 749 SLSVRHLVCVFASLLLERRVIFIADKLSILSKCCHAMVALIYPFAWQHTYIPVLPPAMVD 808 Query: 1079 FIDAPVPFIAGI 1114 + +P PF+ G+ Sbjct: 809 IVCSPTPFLIGL 820
>Q5VZ89:DEN4C_HUMAN DENN domain-containing protein 4C - Homo sapiens (Human)| Length = 1620 Score = 60.8 bits (146), Expect = 2e-08 Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 9/136 (6%) Frame = +2 Query: 884 ATVCRALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLP 1063 +T+ L E+ L VLLE +I++ VL+ + +++ MI PFQWQ +P+ P Sbjct: 105 STLLMNLGPENCATLLLFVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCP 164 Query: 1064 RKLIDFIDAPVPFIAGIQ------HKPPDIKM---KASSLVRINVQKDQVKANLLPQLPR 1216 L + AP+PFI G+ H PP + ++++ ++ +K + LP+ P Sbjct: 165 LSLAAVLSAPLPFIVGVDSRYFDLHDPPQDVVCIDLDTNMLYVSDEKKNMNWKQLPKKP- 223 Query: 1217 YKDLVSDLSPIHSRLS 1264 K+L+S L ++ +LS Sbjct: 224 CKNLLSTLKKLYPQLS 239
>Q7Z401:MYCPP_HUMAN C-myc promoter-binding protein - Homo sapiens (Human)| Length = 1863 Score = 58.5 bits (140), Expect = 9e-08 Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 10/137 (7%) Frame = +2 Query: 884 ATVCRALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLP 1063 +T+ + L E+ + L + E +I++ VL+++ +++ MI PF W +P+ P Sbjct: 394 STLLQNLGPENAVTLLVFAVTEHKILIHSLRPSVLTSVTEALVSMIFPFHWPCPYVPLCP 453 Query: 1064 RKLIDFIDAPVPFIAGIQHK-------PPDIK---MKASSLVRINVQKDQVKANLLPQLP 1213 L D + AP PFI GI + PPD+ + +++ +I K V +LP+ P Sbjct: 454 LALADVLSAPCPFIVGIDSRYFDLYDPPPDVSCVDVDTNTISQIG-DKKNVAWKILPKKP 512 Query: 1214 RYKDLVSDLSPIHSRLS 1264 K+L++ L+ +H +L+ Sbjct: 513 -CKNLMNTLNNLHQQLA 528
>Q9H6A0:DEN2D_HUMAN DENN domain-containing protein 2D - Homo sapiens (Human)| Length = 471 Score = 56.6 bits (135), Expect = 4e-07 Identities = 23/78 (29%), Positives = 43/78 (55%) Frame = +2 Query: 884 ATVCRALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLP 1063 +++ LS E +L +F +LE++I+ + L LS + + ++ PF W +PV+P Sbjct: 233 SSLLHCLSFEQILQIFASAVLERKIIFLAEGLSTLSQCIHAAAALLYPFSWAHTYIPVVP 292 Query: 1064 RKLIDFIDAPVPFIAGIQ 1117 L+ + P PF+ G+Q Sbjct: 293 ESLLATVCCPTPFMVGVQ 310
>Q6P9P8:DEN2C_MOUSE DENN domain-containing protein 2C - Mus musculus (Mouse)| Length = 914 Score = 55.8 bits (133), Expect = 6e-07 Identities = 23/73 (31%), Positives = 43/73 (58%) Frame = +2 Query: 896 RALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKLI 1075 + LS+ ++ + +LLE++++ + +L LS +++ + PF WQ +PVLP +I Sbjct: 660 KCLSVRHLIRVCASLLLERRVIFVANSLSTLSKCGHAVVATLYPFTWQHTYIPVLPVSMI 719 Query: 1076 DFIDAPVPFIAGI 1114 D + +P PF GI Sbjct: 720 DIVCSPTPFFIGI 732
>Q68D51:DEN2C_HUMAN DENN domain-containing protein 2C - Homo sapiens (Human)| Length = 928 Score = 55.8 bits (133), Expect = 6e-07 Identities = 23/73 (31%), Positives = 44/73 (60%) Frame = +2 Query: 896 RALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKLI 1075 + LS+ ++ + +LLE++++ + +L LS +++ + PF WQ +PVLP +I Sbjct: 674 KCLSVCHLIRVCASLLLERRVIFVANSLSTLSKCGHAVVATLYPFTWQHTYIPVLPASMI 733 Query: 1076 DFIDAPVPFIAGI 1114 D + +P PF+ GI Sbjct: 734 DIVCSPTPFLIGI 746
>Q91VV4:DEN2D_MOUSE DENN domain-containing protein 2D - Mus musculus (Mouse)| Length = 469 Score = 55.1 bits (131), Expect = 1e-06 Identities = 22/78 (28%), Positives = 42/78 (53%) Frame = +2 Query: 884 ATVCRALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLP 1063 + + L LE ++ +F +LE++I+ + L LS + + ++ PF W +PV+P Sbjct: 233 SVLLHCLHLEQIIQIFASAVLERKIIFLAEGLSTLSQCIHAAAALLYPFSWAHTYIPVVP 292 Query: 1064 RKLIDFIDAPVPFIAGIQ 1117 L+ + P PF+ G+Q Sbjct: 293 ESLLATVCCPTPFMVGVQ 310
>Q6ZPE2:MTMR5_MOUSE Myotubularin-related protein 5 - Mus musculus (Mouse)| Length = 1867 Score = 45.4 bits (106), Expect = 8e-04 Identities = 19/79 (24%), Positives = 45/79 (56%) Frame = +2 Query: 878 TMATVCRALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPV 1057 ++A + R L + ++L+LF L E +++ + + L+ ++ ++ P ++ +P+ Sbjct: 210 SVALLFRQLGITNVLSLFCAALTEHKVLFLSRSYQRLADACRGLLALLFPLRYSFTYVPI 269 Query: 1058 LPRKLIDFIDAPVPFIAGI 1114 LP +L++ + P PFI G+ Sbjct: 270 LPAQLLEVLSTPTPFIIGV 288
>O95248:MTMR5_HUMAN Myotubularin-related protein 5 - Homo sapiens (Human)| Length = 1866 Score = 45.4 bits (106), Expect = 8e-04 Identities = 19/79 (24%), Positives = 45/79 (56%) Frame = +2 Query: 878 TMATVCRALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPV 1057 ++A + R L + ++L+LF L E +++ + + L+ ++ ++ P ++ +P+ Sbjct: 210 SVALLFRQLGITNVLSLFCAALTEHKVLFLSRSYQRLADACRGLLALLFPLRYSFTYVPI 269 Query: 1058 LPRKLIDFIDAPVPFIAGI 1114 LP +L++ + P PFI G+ Sbjct: 270 LPAQLLEVLSTPTPFIIGV 288
>Q6NTN5:MTMRD_XENLA Myotubularin-related protein 13 - Xenopus laevis (African clawed| frog) Length = 1873 Score = 45.1 bits (105), Expect = 0.001 Identities = 20/79 (25%), Positives = 46/79 (58%) Frame = +2 Query: 878 TMATVCRALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPV 1057 ++A + + L ++++L+LF VL E +++ + L ++ +I P ++ +P+ Sbjct: 197 SVALLFQQLGIQNVLSLFCAVLTENKVLFHSSSFQRLGDACRALEALIYPLKYSYPYIPI 256 Query: 1058 LPRKLIDFIDAPVPFIAGI 1114 LP +L++ + +P PFI G+ Sbjct: 257 LPAQLLEVLSSPTPFIIGV 275
>Q86WG5:MTMRD_HUMAN Myotubularin-related protein 13 - Homo sapiens (Human)| Length = 1849 Score = 45.1 bits (105), Expect = 0.001 Identities = 20/79 (25%), Positives = 47/79 (59%) Frame = +2 Query: 878 TMATVCRALSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPV 1057 ++A + + L ++++L+LF VL E +++ + LS ++ ++ P ++ +P+ Sbjct: 198 SVALLFQQLGIQNVLSLFCAVLTENKVLFHSASFQRLSDACRALESLMFPLKYSYPYIPI 257 Query: 1058 LPRKLIDFIDAPVPFIAGI 1114 LP +L++ + +P PFI G+ Sbjct: 258 LPAQLLEVLSSPTPFIIGV 276
>O02626:MADD_CAEEL MAP kinase-activating death domain protein - Caenorhabditis elegans| Length = 1409 Score = 43.5 bits (101), Expect = 0.003 Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 11/152 (7%) Frame = +2 Query: 902 LSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKL--- 1072 L ++ L + T +LE +IV+ N +S +LSI+ ++ P ++ ++P+LP + Sbjct: 266 LGIDMALRVLTAAMLEFKIVIQSRNYNAVSMCILSIVALLYPLEYMFPVIPLLPAYMPSA 325 Query: 1073 IDFIDAPVPFIAGI-----QHKPPDIKMKASSLVRINVQKD--QVKANL-LPQLPRYKDL 1228 + AP PF+ G+ H+ I+ S ++ +++ + QV +L +P LP Sbjct: 326 EQLLLAPTPFLIGVPSSFFHHR--KIRELPSDVILVDLDTNCLQVPDDLYIPDLPE---- 379 Query: 1229 VSDLSPIHSRLSCEDALAKKHPMYKCNEVQVS 1324 D + + RL ++A+ K M NE V+ Sbjct: 380 -PDATHLKERL--KNAINKMTTMTVDNETSVT 408
>O08873:MADD_RAT MAP kinase-activating death domain protein - Rattus norvegicus (Rat)| Length = 1602 Score = 40.8 bits (94), Expect = 0.020 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Frame = +2 Query: 902 LSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKLI-- 1075 L +++ L + T +LLE ++V+ + LS V++ + MI P ++ ++P+LP + Sbjct: 303 LGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASA 362 Query: 1076 -DFIDAPVPFIAGI 1114 + AP P+I G+ Sbjct: 363 EQLLLAPTPYIIGV 376
>Q80U28:MADD_MOUSE MAP kinase-activating death domain protein - Mus musculus (Mouse)| Length = 1577 Score = 40.8 bits (94), Expect = 0.020 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Frame = +2 Query: 902 LSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKLI-- 1075 L +++ L + T +LLE ++V+ + LS V++ + MI P ++ ++P+LP + Sbjct: 303 LGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASA 362 Query: 1076 -DFIDAPVPFIAGI 1114 + AP P+I G+ Sbjct: 363 EQLLLAPTPYIIGV 376
>Q8WXG6:MADD_HUMAN MAP kinase-activating death domain protein - Homo sapiens (Human)| Length = 1647 Score = 40.8 bits (94), Expect = 0.020 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Frame = +2 Query: 902 LSLESMLALFTGVLLEKQIVVICPNLGVLSAIVLSIIPMIRPFQWQSLLLPVLPRKLI-- 1075 L +++ L + T +LLE ++V+ + LS V++ + MI P ++ ++P+LP + Sbjct: 304 LGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASA 363 Query: 1076 -DFIDAPVPFIAGI 1114 + AP P+I G+ Sbjct: 364 EQLLLAPTPYIIGV 377
>Q6D0E6:RAPA_ERWCT RNA polymerase-associated protein rapA - Erwinia carotovora subsp.| atroseptica (Pectobacterium atrosepticum) Length = 967 Score = 33.9 bits (76), Expect = 2.4 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = +3 Query: 36 RRGLKG*HSLPVKLLWQGQSPVP*ESSYKINQMGILNLQMGFRTMTGQNMLYPSTVYQVL 215 R+G+KG P ++L Q + P+P + I GI+N T ++MLYP +YQ L Sbjct: 421 RQGVKG---FPQRVLHQIRLPLPAQYQTAIKVSGIMNANKPLET-RARDMLYPEQIYQQL 476
>P36786:VE2_HPV19 Regulatory protein E2 - Human papillomavirus type 19| Length = 493 Score = 32.3 bits (72), Expect = 7.1 Identities = 21/57 (36%), Positives = 31/57 (54%) Frame = +2 Query: 383 ISQNMESRCDSFGRASSTYENGQTSPDLLSMHSATSTRLERTPSMESLHSSVKGAGS 553 +S N SR S +AS+T G+ SP +ATS + R+PS S +S++ GS Sbjct: 283 LSSNRRSRSKSRRKASTTRGRGRGSP------TATSDQSSRSPSATSSTTSLRSRGS 333 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 334,494,099 Number of extensions: 7408469 Number of successful extensions: 18825 Number of sequences better than 10.0: 24 Number of HSP's gapped: 18816 Number of HSP's successfully gapped: 26 Length of query: 629 Length of database: 100,686,439 Length adjustment: 119 Effective length of query: 510 Effective length of database: 68,045,334 Effective search space: 34703120340 Effective search space used: 34703120340 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
