>Q19821:ROM1_CAEEL Rhomboid-related protein 1 - Caenorhabditis elegans|
          Length = 356
 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 28/87 (32%), Positives = 40/87 (45%)
 Frame = +3

Query: 531 EAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGSVLSVLFI 710
           EAWR  +  +LHAGL HL  N+I  + VG+ LE     W++G +YL +   GS+L     
Sbjct: 165 EAWRFTSYMFLHAGLNHLLGNVIIQLLVGIPLEVAHKIWRIGPIYLLAVTSGSLLQYAID 224

Query: 711 RNGVXXXXXXXXXXXXXXXXXELITNW 791
            N +                  +I NW
Sbjct: 225 PNSLLVGASAGVYALIFAHVANVILNW 251

>P54493:YQGP_BACSU TPR repeat-containing protein yqgP - Bacillus subtilis|
          Length = 507

 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 28/79 (35%), Positives = 45/79 (56%)
 Frame = +3

Query: 471 SSATLGKYGGLDRYKVVHGNEAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWK 650
           ++ TL  +G  +   +  G E WRL T   LH G+ HL  N ++L  VG  +E+ +G  +
Sbjct: 202 NTETLVAFGAKENSLIAQG-EWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGR 260

Query: 651 VGLVYLFSGLGGSVLSVLF 707
             L+YL +G+ GS+ S +F
Sbjct: 261 FLLIYLAAGITGSIASFVF 279

>Q6IUY1:RHBL3_TOXGO Rhomboid-like protease 3 - Toxoplasma gondii|
          Length = 263

 Score = 48.9 bits (115), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 39/58 (67%)
 Frame = +3

Query: 531 EAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGSVLSVL 704
           + WR+ T  +LHA ++HL  N++ ++ + +RLE+++G  K  + Y  S + G++LS+L
Sbjct: 82  QLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNLLSML 139

>P58872:RHBL3_HUMAN Rhomboid-related protein 3 - Homo sapiens (Human)|
          Length = 404

 Score = 48.9 bits (115), Expect = 4e-05
 Identities = 22/54 (40%), Positives = 34/54 (62%)
 Frame = +3

Query: 531 EAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGSV 692
           + WR  T  ++HAG+ HLG N++  + VGV LE   G  ++GLVY+   + GS+
Sbjct: 210 QVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSL 263

>Q695T8:RHBL4_TOXGO Rhomboid-like protease 4 - Toxoplasma gondii|
          Length = 641

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 23/79 (29%), Positives = 44/79 (55%)
 Frame = +3

Query: 468 PSSATLGKYGGLDRYKVVHGNEAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFW 647
           P++  L   GGL+   +   +E +RL TS ++H G +H+  N+   I +   +E  +GF 
Sbjct: 320 PNARVLRHLGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILWIIEPDWGFL 379

Query: 648 KVGLVYLFSGLGGSVLSVL 704
           +  L++   G+ G++LS +
Sbjct: 380 RTTLLFFLGGISGNLLSAV 398

>P58873:RHBL3_MOUSE Rhomboid-related protein 3 - Mus musculus (Mouse)|
          Length = 404

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 22/54 (40%), Positives = 33/54 (61%)
 Frame = +3

Query: 531 EAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGSV 692
           +AWR  T  ++HAG+  LG N+   + VGV LE   G  ++GLVY+   + GS+
Sbjct: 210 QAWRYVTYIFMHAGVEQLGLNVALQLLVGVPLEMVHGATRIGLVYVAGVVAGSL 263

>O75783:RHBL1_HUMAN Rhomboid-related protein 1 - Homo sapiens (Human)|
          Length = 438

 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 23/61 (37%), Positives = 32/61 (52%)
 Frame = +3

Query: 510 YKVVHGNEAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGS 689
           Y   H   AWR  T  ++H GL  LG N +  + +GV LE   G  ++ L+YL   L GS
Sbjct: 237 YHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGS 296

Query: 690 V 692
           +
Sbjct: 297 L 297

>Q8VC82:RHBL1_MOUSE Rhomboid-related protein 1 - Mus musculus (Mouse)|
          Length = 373

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 23/61 (37%), Positives = 32/61 (52%)
 Frame = +3

Query: 510 YKVVHGNEAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGS 689
           Y   H   AWR  T  ++H GL  LG N +  + +GV LE   G  ++ L+YL   L GS
Sbjct: 172 YHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGS 231

Query: 690 V 692
           +
Sbjct: 232 L 232

>P46116:AARA_PROST Protein aarA - Providencia stuartii|
          Length = 281

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 20/67 (29%), Positives = 38/67 (56%)
 Frame = +3

Query: 498 GLDRYKVVHGNEAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSG 677
           G + Y++    + WR   S  LH+   HL  N ++L  +G+  E+ +G +K+  +Y+ SG
Sbjct: 56  GANIYQLSLTGDWWRYPISMMLHSNGTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISG 115

Query: 678 LGGSVLS 698
           +G ++ S
Sbjct: 116 IGAALFS 122

>P20350:RHOM_DROME Protein rhomboid - Drosophila melanogaster (Fruit fly)|
          Length = 355

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +3

Query: 531 EAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGSV 692
           + WR  +  +LHA   HLG N++  +F G+ LE   G  ++G++Y+     GS+
Sbjct: 149 QVWRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAGSL 202

>Q9NX52:RHBL2_HUMAN Rhomboid-related protein 2 - Homo sapiens (Human)|
          Length = 303

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 22/59 (37%), Positives = 34/59 (57%)
 Frame = +3

Query: 531 EAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGSVLSVLF 707
           EAWR  +   +HAG+ H+  N+   + +G+ LE      +VGLVYL   + GS+ S +F
Sbjct: 119 EAWRFISYMLVHAGVQHILGNLCMQLVLGIPLEMVHKGLRVGLVYLAGVIAGSLASSIF 177

>Q695T9:RHBL2_TOXGO Rhomboid-like protease 2 - Toxoplasma gondii|
          Length = 283

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 24/80 (30%), Positives = 45/80 (56%)
 Frame = +3

Query: 444 LKENPLFGPSSATLGKYGGLDRYKVVHGNEAWRLETSTWLHAGLIHLGANMISLIFVGVR 623
           L  N +  P+  TL  +G  +  +++   E WRL    +LH  L H+  N+   I +G+ 
Sbjct: 81  LAPNEILAPTPQTLVMFGA-NIPELIRVGEIWRLICPLFLHLNLFHILMNLWVQIRIGLT 139

Query: 624 LEQQFGFWKVGLVYLFSGLG 683
           +E+++G WK+ L+ ++ G+G
Sbjct: 140 MEEKYG-WKM-LLAVYFGVG 157

>P34356:ROM2_CAEEL Rhomboid-related protein 2 - Caenorhabditis elegans|
          Length = 435

 Score = 38.1 bits (87), Expect = 0.079
 Identities = 20/60 (33%), Positives = 34/60 (56%)
 Frame = +3

Query: 522 HGNEAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGSVLSV 701
           H  E WRL T   ++ G+ H+  N++  + +GV LE     W++ ++Y    L GS+LS+
Sbjct: 165 HLPELWRLFTYCLINVGIFHIIFNILIQLAIGVPLELVHR-WRIYILYFMGVLFGSILSL 223

>Q6GV23:RHBL5_TOXGO Rhomboid-like protease 5 - Toxoplasma gondii|
          Length = 841

 Score = 37.7 bits (86), Expect = 0.10
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +3

Query: 468 PSSATLGKYGGLDRYKVVHGNEAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFW 647
           P+       G LD  KV +  E +R+    +LH G +HL  N+         LE  +GF 
Sbjct: 442 PNPRVFSSLGALDTNKVRNYGEMFRVVWGMFLHGGWMHLLLNVSCQAQTLWILEPAWGFL 501

Query: 648 KVGLVYLFSGLGGSVLSVL 704
           +   +++  G+ GS+LS +
Sbjct: 502 RTLSLWIVGGVSGSLLSAV 520

>Q695U0:RHBL1_TOXGO Rhomboid-like protease 1 - Toxoplasma gondii|
          Length = 293

 Score = 37.4 bits (85), Expect = 0.13
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +3

Query: 516 VVHGNEAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGSVL 695
           ++   + WRL    +LHA   H+  N+   + +G  +E+++G  K   +Y  S + G++L
Sbjct: 103 LIKQGQVWRLLLPVFLHANFFHVFFNVFFQLRMGFTIERRYGLLKFTGLYFASAIYGNLL 162

Query: 696 S 698
           S
Sbjct: 163 S 163

>O88779:RHBL1_RAT Rhomboid-related protein 1 - Rattus norvegicus (Rat)|
          Length = 164

 Score = 36.2 bits (82), Expect = 0.30
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 558 WLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGSV 692
           ++H GL  LG N +  + +GV LE   G  ++ L+YL   L GS+
Sbjct: 1   FMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSL 45

>P03186:TEGU_EBV Large tegument protein - Epstein-Barr virus (strain B95-8) (HHV-4)|
           (Human herpesvirus 4)
          Length = 3149

 Score = 34.3 bits (77), Expect = 1.1
 Identities = 36/153 (23%), Positives = 52/153 (33%), Gaps = 11/153 (7%)
 Frame = -1

Query: 784 VMSSDSMAPRSPKRAPEAPTETPFLMKSTESTLPPNPEKR*TRPTF-----------QNP 638
           ++SSD  A  +P      P   PF  +     L P P +  T  +F             P
Sbjct: 273 LVSSDGEAAGTPGADSSPPVMLPFERRIIPYNLRPLPSRSFTSDSFPAARYSPAKTNSPP 332

Query: 637 NCCSRRTPTKMRLIMLAPRWMRPACSQVLVSSRHASFPCTTLYRSSPPYFPSVAEEGPKR 458
           +  +   P        AP    PA +    ++  ++ P +    SSPP F  +   G   
Sbjct: 333 SSPASAAPASAAPASAAPASAAPASAAPASAAPASAAPASAAPASSPPLFIPIPGLGHTP 392

Query: 457 GFSLSGWKEKRRRTPRPTQSAAAPPLPLRGQSL 359
           G            TP    S AAP  P R + L
Sbjct: 393 GVPAPS-------TPPRASSGAAPQTPKRKKGL 418

>P24928:RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 - Homo sapiens (Human)|
          Length = 1970

 Score = 33.9 bits (76), Expect = 1.5
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
 Frame = -1

Query: 778  SSDSMAPRSPKRAPEAPTET---PFLMKSTESTLPPNPEKR*TRPTFQNPNCCSRRTPTK 608
            +S S +P SP+  P++PT T   P    S+ S  P +P+   T P++   +     TPT 
Sbjct: 1800 TSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS--PEYTPTS 1857

Query: 607  MRLIMLAPRWMRPACSQVLVSSRHASFPCTTLYR-SSPPYFPS 482
             +    +P++   +      S  ++  P T  Y  +SP Y P+
Sbjct: 1858 PKYSPTSPKYSPTSPKYSPTSPTYS--PTTPKYSPTSPTYSPT 1898

>P11414:RPB1_CRIGR DNA-directed RNA polymerase II subunit RPB1 - Cricetulus griseus|
           (Chinese hamster)
          Length = 467

 Score = 33.9 bits (76), Expect = 1.5
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
 Frame = -1

Query: 778 SSDSMAPRSPKRAPEAPTET---PFLMKSTESTLPPNPEKR*TRPTFQNPNCCSRRTPTK 608
           +S S +P SP+  P++PT T   P    S+ S  P +P+   T P++   +     TPT 
Sbjct: 297 TSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSS--PEYTPTS 354

Query: 607 MRLIMLAPRWMRPACSQVLVSSRHASFPCTTLYR-SSPPYFPS 482
            +    +P++   +      S  ++  P T  Y  +SP Y P+
Sbjct: 355 PKYSPTSPKYSPTSPKYSPTSPTYS--PTTPKYSPTSPTYSPT 395

>P16356:RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 - Caenorhabditis elegans|
          Length = 1852

 Score = 33.9 bits (76), Expect = 1.5
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
 Frame = -1

Query: 778  SSDSMAPRSPKRAPEAPTETPFLMKSTESTLPPNPEKR*TRPTFQNPNCCSRR-----TP 614
            SS S +P SP+ +P +PT +P    ++ +  P +P    T PT+ +P   S       +P
Sbjct: 1664 SSPSYSPSSPRYSPTSPTYSP----TSPTYSPTSPTYSPTSPTY-SPTSPSYESGGGYSP 1718

Query: 613  TKMRLIMLAPRWMRPACSQVLVSSRHASFPCTTLYR-SSPPYFPSVAEEGP--KRGFSLS 443
            +  +    +P +   + S    S +++  P +  Y  SSP Y PS     P   RGFS S
Sbjct: 1719 SSPKYSPSSPTYSPTSPSYSPTSPQYS--PTSPQYSPSSPTYTPSSPTYNPTSPRGFS-S 1775

Query: 442  GWKEKRRRTPRPTQSAAAPPLP 377
                    T  PT  +  P  P
Sbjct: 1776 PQYSPTSPTYSPTSPSYTPSSP 1797

>P08775:RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 - Mus musculus (Mouse)|
          Length = 1970

 Score = 33.5 bits (75), Expect = 1.9
 Identities = 29/105 (27%), Positives = 44/105 (41%)
 Frame = -1

Query: 778  SSDSMAPRSPKRAPEAPTETPFLMKSTESTLPPNPEKR*TRPTFQNPNCCSRRTPTKMRL 599
            +S S +P SP+  P++PT TP    S+ S  P +P    T P +         TPT    
Sbjct: 1800 TSPSYSPSSPRYTPQSPTYTP----SSPSYSPSSPSYSPTSPKY---------TPTSPSY 1846

Query: 598  IMLAPRWMRPACSQVLVSSRHASFPCTTLYRSSPPYFPSVAEEGP 464
               +P +  PA  +   +S   S        +SP Y P+  +  P
Sbjct: 1847 SPSSPEY-TPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSP 1890

>Q4V8F3:RHBD1_RAT Rhomboid domain-containing protein 1 - Rattus norvegicus (Rat)|
          Length = 316

 Score = 33.1 bits (74), Expect = 2.5
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 513 KVVHGNEAWRLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGF-WKVGLVYLFSGLGGS 689
           K    N+  RL  S   H    HL  NM+S+++ GV+LE++ G  W   ++  FS L G 
Sbjct: 58  KCYQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEKRLGSRWFAYIIATFSLLTGV 117

Query: 690 VLSVL 704
           V  +L
Sbjct: 118 VYLLL 122

>Q6W4X9:MUC6_HUMAN Mucin-6 precursor - Homo sapiens (Human)|
          Length = 2392

 Score = 33.1 bits (74), Expect = 2.5
 Identities = 45/175 (25%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
 Frame = -1

Query: 784  VMSSDSMAPRSPKRAPEAPTETPFLMKSTESTLPPNPEKR*TRPTFQ---------NPNC 632
            ++SS   +P S    P +PT+TP L  +  S+ P        RPT            P  
Sbjct: 1231 LLSSTGPSPSS-NHTPASPTQTPLLPATLTSSKPTASSGEPPRPTTAVTPQATSGLPPTA 1289

Query: 631  CSRRTPTKMRLIMLAPRWMRPACSQVLVSSRHASFPCTTLYRSSPPYFPSVAEEGPKRGF 452
              R T TK  +     R      S    S+   S   TT+   +P    +          
Sbjct: 1290 TLRSTATKPTVTQATTRATASTASPATTSTAQ-STTRTTMTLPTPATSGTSPTLPKSTNQ 1348

Query: 451  SLSGWKEKRRRTPRPT-QSAAAPPLPLRGQ---SL*YMTTMNMATLASTTSGTSH 299
             L G    +   PRPT  S   P  P  GQ        TT    T   TT  T H
Sbjct: 1349 ELPGTTATQTTGPRPTPASTTGPTTPQPGQPTRPTATETTQTRTTTEYTTPQTPH 1403

>Q91ZX7:LRP1_MOUSE Low-density lipoprotein receptor-related protein 1 precursor - Mus|
            musculus (Mouse)
          Length = 4545

 Score = 32.7 bits (73), Expect = 3.3
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
 Frame = +2

Query: 947  SDHCSWCHYITCVPTS------------HWKCDN*KKKRGDNSCGDK--RAGHRGNCFSL 1084
            SD  + C Y TC P +            +W+CDN      DN CGD    AG   +C S 
Sbjct: 966  SDESASCAYPTCFPLTQFTCNNGRCININWRCDN------DNDCGDNSDEAGCSHSCSST 1019

Query: 1085 AF 1090
             F
Sbjct: 1020 QF 1021



 Score = 32.3 bits (72), Expect = 4.3
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 965  CHYITCVPTSHWKCDN*KKKRGDNSCGDKRAGHRGNCFSLA 1087
            C+   C+P  HW CD      GDN CGD       NC + A
Sbjct: 1023 CNSGRCIP-EHWTCD------GDNDCGDYSDETHANCTNQA 1056

>Q07954:LRP1_HUMAN Low-density lipoprotein receptor-related protein 1 precursor - Homo|
            sapiens (Human)
          Length = 4544

 Score = 32.7 bits (73), Expect = 3.3
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
 Frame = +2

Query: 947  SDHCSWCHYITCVPTS------------HWKCDN*KKKRGDNSCGDK--RAGHRGNCFSL 1084
            SD  + C Y TC P +            +W+CDN      DN CGD    AG   +C S 
Sbjct: 965  SDESASCAYPTCFPLTQFTCNNGRCININWRCDN------DNDCGDNSDEAGCSHSCSST 1018

Query: 1085 AF 1090
             F
Sbjct: 1019 QF 1020



 Score = 32.3 bits (72), Expect = 4.3
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 965  CHYITCVPTSHWKCDN*KKKRGDNSCGDKRAGHRGNCFSLA 1087
            C+   C+P  HW CD      GDN CGD       NC + A
Sbjct: 1022 CNSGRCIP-EHWTCD------GDNDCGDYSDETHANCTNQA 1055

>Q02817:MUC2_HUMAN Mucin-2 precursor - Homo sapiens (Human)|
          Length = 5179

 Score = 32.3 bits (72), Expect = 4.3
 Identities = 39/155 (25%), Positives = 52/155 (33%), Gaps = 6/155 (3%)
 Frame = -1

Query: 751  PKRAPEAPTETPFLMKSTESTLPPN------PEKR*TRPTFQNPNCCSRRTPTKMRLIML 590
            P   P  PT TP    ++ +TLPP       P    T P    P+  +  TP+       
Sbjct: 1614 PTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTT 1673

Query: 589  APRWMRPACSQVLVSSRHASFPCTTLYRSSPPYFPSVAEEGPKRGFSLSGWKEKRRRTPR 410
             P       S +  +    S P TT+   SP   PS          S +        TP 
Sbjct: 1674 TPPPTTTPSSPITTT---PSPPTTTMTTPSPTTTPSSPITTTTTPSSTT--------TPS 1722

Query: 409  PTQSAAAPPLPLRGQSL*YMTTMNMATLASTTSGT 305
            P  +    P P    S     T  M TL  TT+ +
Sbjct: 1723 PPPTTMTTPSPTTTPS---PPTTTMTTLPPTTTSS 1754

>P98157:LRP1_CHICK Low-density lipoprotein receptor-related protein 1 precursor - Gallus|
            gallus (Chicken)
          Length = 4543

 Score = 32.3 bits (72), Expect = 4.3
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 965  CHYITCVPTSHWKCDN*KKKRGDNSCGDKRAGHRGNCFSLA 1087
            C+   C+P  HW CD      GDN CGD       NC + A
Sbjct: 1020 CNSGRCIPV-HWTCD------GDNDCGDYSDETHANCTNQA 1053



 Score = 32.0 bits (71), Expect = 5.7
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
 Frame = +2

Query: 947  SDHCSWCHYITCVPTS------------HWKCDN*KKKRGDNSCGDK--RAGHRGNCFSL 1084
            SD  + C Y TC P +            +W+CDN      DN CGD    AG   +C S 
Sbjct: 963  SDESASCAYPTCFPLTQFTCNNGRCININWRCDN------DNDCGDNSDEAGCSHSCSSN 1016

Query: 1085 AF 1090
             F
Sbjct: 1017 QF 1018

>Q8BHC7:RHBD1_MOUSE Rhomboid domain-containing protein 1 - Mus musculus (Mouse)|
          Length = 315

 Score = 31.6 bits (70), Expect = 7.4
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 540 RLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGF-WKVGLVYLFSGLGGSVLSVL 704
           RL  S   H    HL  NM+S+++ GV+LE++ G  W   ++  FS L G V  +L
Sbjct: 67  RLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLGSRWFAYVIATFSLLTGVVYLLL 122

>Q5ZMJ9:SRRM1_CHICK Serine/arginine repetitive matrix protein 1 - Gallus gallus|
           (Chicken)
          Length = 888

 Score = 31.6 bits (70), Expect = 7.4
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 8/147 (5%)
 Frame = -1

Query: 775 SDSMAPR------SPKRAPEAPTETPFLMKSTESTLPPNPEKR*TRPTFQNPNCCSRRTP 614
           S S +PR      SP+R   +P+  P   + + S  PP P +R      ++P+   RR+P
Sbjct: 523 SPSPSPRKRQKEPSPRRRRRSPSPPPARRRRSPSP-PPPPRRR------RSPSLPRRRSP 575

Query: 613 TKMRLIMLAPRWMRPACSQVLVSSRHASFPCTTLYRSSPPYFPSVAE--EGPKRGFSLSG 440
           +        PR   P       S R  S P    Y  SPP     A     PKR  S S 
Sbjct: 576 SP------PPRRRSP-------SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSP 622

Query: 439 WKEKRRRTPRPTQSAAAPPLPLRGQSL 359
             ++R     P +  ++P    R  S+
Sbjct: 623 QSKRRVSHSPPPKQRSSPAAKRRSPSI 649

>P35074:RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 - Caenorhabditis briggsae|
          Length = 1853

 Score = 31.6 bits (70), Expect = 7.4
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
 Frame = -1

Query: 778  SSDSMAPRSPKRAPEAPTETPFLMKSTESTLPPNPEKR*TRPTFQNPNCCSRR--TPTKM 605
            +S S +P SP+ +P +PT +P    ++ +  P +P    T PT+ +P   S    +P+  
Sbjct: 1668 TSPSYSPSSPRYSPTSPTYSP----TSPTYSPTSPTYSPTSPTY-SPTSPSYEGYSPSSP 1722

Query: 604  RLIMLAPRWMRPACSQVLVSSRHASFPCTTLYR-SSPPYFPSVAEEGP--KRGFSLSGWK 434
            +    +P +   + S    S +++  P +  Y  SSP Y PS     P   R FS S   
Sbjct: 1723 KYSPSSPTYSPTSPSYSPTSPQYS--PTSPQYSPSSPTYTPSSPTYNPTSPRAFS-SPQY 1779

Query: 433  EKRRRTPRPTQSAAAPPLP 377
                 T  PT  +  P  P
Sbjct: 1780 SPTSPTYSPTSPSYTPSSP 1798

>P70670:NACAM_MOUSE Nascent polypeptide-associated complex subunit alpha,|
           muscle-specific form - Mus musculus (Mouse)
          Length = 2187

 Score = 31.6 bits (70), Expect = 7.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 763 APRSPKRAPEAPTETPFLMKSTESTLPPNPEK 668
           AP SPK AP  PTE+    K   + + P+P+K
Sbjct: 762 APPSPKGAPIVPTESSISSKQVPAEILPSPQK 793

>Q767L8:MDC1_PIG Mediator of DNA damage checkpoint protein 1 - Sus scrofa (Pig)|
          Length = 2042

 Score = 31.6 bits (70), Expect = 7.4
 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 4/136 (2%)
 Frame = -1

Query: 760  PRSPKRAPEAPTETPF----LMKSTESTLPPNPEKR*TRPTFQNPNCCSRRTPTKMRLIM 593
            P  P+     PTE P     + +++ S  P    KR +      P+ CS       R   
Sbjct: 1658 PTPPELQCPVPTEQPVPPEPIPRASCSRRPRATRKRESLTAHVGPDPCSAPPEPNSR--- 1714

Query: 592  LAPRWMRPACSQVLVSSRHASFPCTTLYRSSPPYFPSVAEEGPKRGFSLSGWKEKRRRTP 413
                    + +Q L ++   + P      +  P  P V   G + GF+L    +  ++  
Sbjct: 1715 -------SSRTQSLSTTPEPTLPQLPEAPAHAPQIPKVEAAG-RPGFTLEPQPKATQKRK 1766

Query: 412  RPTQSAAAPPLPLRGQ 365
            RP   A +PPLP R Q
Sbjct: 1767 RPLAPADSPPLPKRLQ 1782

>Q9JLQ0:CD2AP_MOUSE CD2-associated protein - Mus musculus (Mouse)|
          Length = 637

 Score = 31.2 bits (69), Expect = 9.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 775 SDSMAPRSPKRAPEAPTETPFLMKSTESTLPPNPEK 668
           S   AP+ P + P APT+   L++S  +  P  PEK
Sbjct: 380 SKPAAPQVPPKKPTAPTKASNLLRSPGAVYPKRPEK 415


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 146,390,484
Number of extensions: 2948002
Number of successful extensions: 9801
Number of sequences better than 10.0: 33
Number of HSP's gapped: 9766
Number of HSP's successfully gapped: 36
Length of query: 425
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 309
Effective length of database: 68,868,219
Effective search space: 21280279671
Effective search space used: 21280279671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)