| Clone Name | FLbaf15c01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK241226.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065124M13, full insert sequence Length = 711 Score = 170 bits (86), Expect = 3e-39 Identities = 158/182 (86%) Strand = Plus / Plus Query: 1 aggaacttgaaaagctaaataaaatggataaggtgtcagcagcattgcaagagtttgtag 60 ||||||||||| |||| |||||| |||||||||||||||||||||||||||| || | | Sbjct: 190 aggaacttgaagagcttgataaaacggataaggtgtcagcagcattgcaagagcttatgg 249 Query: 61 taacaattgaaagcaaagcagaccctctacttcctgtaactaccggagttgcttaccagt 120 ||||| || |||||||| || ||||||||||| || ||||| || ||||| ||||| Sbjct: 250 taacagcggagagcaaagcggatcctctacttccagtgactactgggcctgcttgccagt 309 Query: 121 cttgggataggtggtttgaaggtccgcaggatctgcgtagatgcaaatgctggtttttgt 180 ||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 310 cttgggacagatggtttgaaggtccgcaagatctgcgcagatgcaaatgctggtttttgt 369 Query: 181 ga 182 || Sbjct: 370 ga 371
>ref|NM_001057255.1| Oryza sativa (japonica cultivar-group) Os03g0635100 (Os03g0635100) mRNA, complete cds Length = 282 Score = 170 bits (86), Expect = 3e-39 Identities = 158/182 (86%) Strand = Plus / Plus Query: 1 aggaacttgaaaagctaaataaaatggataaggtgtcagcagcattgcaagagtttgtag 60 ||||||||||| |||| |||||| |||||||||||||||||||||||||||| || | | Sbjct: 101 aggaacttgaagagcttgataaaacggataaggtgtcagcagcattgcaagagcttatgg 160 Query: 61 taacaattgaaagcaaagcagaccctctacttcctgtaactaccggagttgcttaccagt 120 ||||| || |||||||| || ||||||||||| || ||||| || ||||| ||||| Sbjct: 161 taacagcggagagcaaagcggatcctctacttccagtgactactgggcctgcttgccagt 220 Query: 121 cttgggataggtggtttgaaggtccgcaggatctgcgtagatgcaaatgctggtttttgt 180 ||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 221 cttgggacagatggtttgaaggtccgcaagatctgcgcagatgcaaatgctggtttttgt 280 Query: 181 ga 182 || Sbjct: 281 ga 282
>dbj|AB120662.1| Oryza sativa (japonica cultivar-group) RGG1 mRNA for heterotrimeric G protein gamma subunit 1, complete cds Length = 282 Score = 170 bits (86), Expect = 3e-39 Identities = 158/182 (86%) Strand = Plus / Plus Query: 1 aggaacttgaaaagctaaataaaatggataaggtgtcagcagcattgcaagagtttgtag 60 ||||||||||| |||| |||||| |||||||||||||||||||||||||||| || | | Sbjct: 101 aggaacttgaagagcttgataaaacggataaggtgtcagcagcattgcaagagcttatgg 160 Query: 61 taacaattgaaagcaaagcagaccctctacttcctgtaactaccggagttgcttaccagt 120 ||||| || |||||||| || ||||||||||| || ||||| || ||||| ||||| Sbjct: 161 taacagcggagagcaaagcggatcctctacttccagtgactactgggcctgcttgccagt 220 Query: 121 cttgggataggtggtttgaaggtccgcaggatctgcgtagatgcaaatgctggtttttgt 180 ||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 221 cttgggacagatggtttgaaggtccgcaagatctgcgcagatgcaaatgctggtttttgt 280 Query: 181 ga 182 || Sbjct: 281 ga 282
>gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genomic sequence, complete sequence Length = 140980 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Plus Query: 110 tgcttaccagtcttgggataggtggtttgaaggtccgcaggatctgcgtagatgcaaatg 169 ||||| |||||||||||| || ||||||||||||||||| |||||||| ||||||||||| Sbjct: 83292 tgcttgccagtcttgggacagatggtttgaaggtccgcaagatctgcgcagatgcaaatg 83351 Query: 170 ctggtttttgtga 182 ||||||||||||| Sbjct: 83352 ctggtttttgtga 83364 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 1 aggaacttgaaaagctaaataaaatggataaggtgtcagcagcattgcaagagt 54 ||||||||||| |||| |||||| ||||||||||||||||||||||||||||| Sbjct: 82965 aggaacttgaagagcttgataaaacggataaggtgtcagcagcattgcaagagt 83018
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Minus Query: 110 tgcttaccagtcttgggataggtggtttgaaggtccgcaggatctgcgtagatgcaaatg 169 ||||| |||||||||||| || ||||||||||||||||| |||||||| ||||||||||| Sbjct: 24057474 tgcttgccagtcttgggacagatggtttgaaggtccgcaagatctgcgcagatgcaaatg 24057415 Query: 170 ctggtttttgtga 182 ||||||||||||| Sbjct: 24057414 ctggtttttgtga 24057402 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 1 aggaacttgaaaagctaaataaaatggataaggtgtcagcagcattgcaagagt 54 ||||||||||| |||| |||||| ||||||||||||||||||||||||||||| Sbjct: 24057801 aggaacttgaagagcttgataaaacggataaggtgtcagcagcattgcaagagt 24057748
>emb|AL390786.15| Human DNA sequence from clone RP11-219F10 on chromosome 10 Contains a novel gene, complete sequence Length = 104712 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 204 gtgacaccaaaacacaagcaaca 226 ||||||||||||||||||||||| Sbjct: 94095 gtgacaccaaaacacaagcaaca 94117
>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete sequence Length = 201727 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 10 aaaagctaaataaaatggataaggtgt 36 ||||||||||||||||||| ||||||| Sbjct: 165082 aaaagctaaataaaatggaaaaggtgt 165056
>emb|Z99104.2|BSUB0001 Bacillus subtilis complete genome (section 1 of 21): from 1 to 213080 Length = 213080 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 182 acaaaatggcaagaaagtaaga 203 |||||||||||||||||||||| Sbjct: 113306 acaaaatggcaagaaagtaaga 113327
>emb|X73989.1|BSCTS B.subtilis gene for cysteinyl-tRNA synthetase Length = 1922 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 182 acaaaatggcaagaaagtaaga 203 |||||||||||||||||||||| Sbjct: 180 acaaaatggcaagaaagtaaga 201
>gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109999 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 205 tgacaccaaaacacaagcaaca 226 |||||||||||||||||||||| Sbjct: 90357 tgacaccaaaacacaagcaaca 90378
>dbj|D26185.1|BAC180K B. subtilis DNA, 180 kilobase region of replication origin Length = 180136 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 182 acaaaatggcaagaaagtaaga 203 |||||||||||||||||||||| Sbjct: 176908 acaaaatggcaagaaagtaaga 176929
>gb|L14580.1|BACGLUSYN Bacillus subtilis glutamyl-tRNA transferase (gltX), serine acetyltransferase (cysE), and cysteinyl-tRNA synthetase (cysS) genes, complete cds's Length = 6357 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 182 acaaaatggcaagaaagtaaga 203 |||||||||||||||||||||| Sbjct: 3968 acaaaatggcaagaaagtaaga 3989
>ref|XM_001031954.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00715970) mRNA, complete cds Length = 1188 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 agaaattatgtgaactctctt 458 ||||||||||||||||||||| Sbjct: 568 agaaattatgtgaactctctt 588
>ref|NM_123594.2| Arabidopsis thaliana unknown protein (AT5G42290) mRNA, complete cds Length = 405 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 tgacaccaaaacacaagcaac 225 ||||||||||||||||||||| Sbjct: 257 tgacaccaaaacacaagcaac 277
>gb|AC161219.4| Mus musculus chromosome 7, clone RP23-83E16, complete sequence Length = 211735 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 457 ttattcttttcatttagttgt 477 ||||||||||||||||||||| Sbjct: 176495 ttattcttttcatttagttgt 176515
>gb|BT015703.1| Arabidopsis thaliana At5g42290 mRNA, complete cds Length = 333 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 tgacaccaaaacacaagcaac 225 ||||||||||||||||||||| Sbjct: 257 tgacaccaaaacacaagcaac 277
>gb|AC139755.3| Mus musculus BAC clone RP24-96N20 from chromosome 6, complete sequence Length = 192869 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 gaaaagctaaataaaatggat 29 ||||||||||||||||||||| Sbjct: 92125 gaaaagctaaataaaatggat 92105
>gb|AC161440.8| Mus musculus chromosome 7, clone RP23-309B10, complete sequence Length = 181423 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 ttattcttttcatttagttgt 477 ||||||||||||||||||||| Sbjct: 52386 ttattcttttcatttagttgt 52366
>gb|BT012116.1| Arabidopsis thaliana At5g42290 gene, complete cds Length = 525 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 tgacaccaaaacacaagcaac 225 ||||||||||||||||||||| Sbjct: 320 tgacaccaaaacacaagcaac 340
>gb|AC125503.3| Oryctolagus cuniculus clone LB1-115H21, complete sequence Length = 176296 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggataa 31 |||||||||| |||||||||||||| Sbjct: 88177 ttgaaaagctgaataaaatggataa 88153
>gb|AC149032.3| Medicago truncatula chromosome 2 BAC clone mth2-82k13, complete sequence Length = 113691 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tgaaggaattgtatgagaagg 292 ||||||||||||||||||||| Sbjct: 2423 tgaaggaattgtatgagaagg 2403
>emb|CT005239.3| Pan troglodytes chromosome X clone PTB-125H24 map Xq28, complete sequence Length = 262483 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 cttgaaaagctaaataaaatggata 30 ||||||||| ||||||||||||||| Sbjct: 101211 cttgaaaaggtaaataaaatggata 101235
>emb|CR956404.10| Pig DNA sequence from clone PigE-75D22 on chromosome 17, complete sequence Length = 135396 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 ccgattcttttcccatagagt 254 ||||||||||||||||||||| Sbjct: 72379 ccgattcttttcccatagagt 72359
>gb|AC009990.9| Homo sapiens chromosome 05 clone RP11-94N1, complete sequence Length = 159772 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 17 aaataaaatggataaggtgtcagca 41 |||||||||||| |||||||||||| Sbjct: 96040 aaataaaatggaaaaggtgtcagca 96016
>gb|AC093902.3| Homo sapiens BAC clone RP11-732B24 from 4, complete sequence Length = 179591 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggataa 31 ||||||||||| ||||||||||||| Sbjct: 8134 ttgaaaagctagataaaatggataa 8110
>emb|Z69908.1|HSU220B11 Human DNA sequence from clone LL0XNC01-220B11 on chromosome X, complete sequence Length = 41247 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 acaccaaaacacaagcaacag 227 ||||||||||||||||||||| Sbjct: 31335 acaccaaaacacaagcaacag 31355
>emb|AL391139.19| Human DNA sequence from clone RP11-353K22 on chromosome X Contains the gene for a novel GTPase and two CpG islands, complete sequence Length = 128899 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 6 cttgaaaagctaaataaaatggata 30 ||||||||| ||||||||||||||| Sbjct: 103857 cttgaaaaggtaaataaaatggata 103833
>gb|AC010259.7| Homo sapiens chromosome 5 clone CTC-454M9, complete sequence Length = 195476 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 17 aaataaaatggataaggtgtcagca 41 |||||||||||| |||||||||||| Sbjct: 104661 aaataaaatggaaaaggtgtcagca 104637
>ref|XM_650587.1| Entamoeba histolytica HM-1:IMSS malate dehydrogenase (24.t00003) partial mRNA Length = 1032 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 tttgttcttcaataagttctt 345 ||||||||||||||||||||| Sbjct: 979 tttgttcttcaataagttctt 959
>gb|AC135467.15| Medicago truncatula clone mth2-34h12, complete sequence Length = 114945 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tgaaggaattgtatgagaagg 292 ||||||||||||||||||||| Sbjct: 80768 tgaaggaattgtatgagaagg 80748
>dbj|AB023032.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K5J14 Length = 59762 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 tgacaccaaaacacaagcaac 225 ||||||||||||||||||||| Sbjct: 50500 tgacaccaaaacacaagcaac 50520
>gb|AC130810.14| Medicago truncatula clone mth2-36b14, complete sequence Length = 117901 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tgaaggaattgtatgagaagg 292 ||||||||||||||||||||| Sbjct: 74179 tgaaggaattgtatgagaagg 74159
>emb|CT009685.18| Pig DNA sequence from clone CH242-172A22 on chromosome 17, complete sequence Length = 130271 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 ccgattcttttcccatagagt 254 ||||||||||||||||||||| Sbjct: 102395 ccgattcttttcccatagagt 102415
>emb|AL512414.2|CNS07EFC Human chromosome 14 DNA sequence BAC R-663F5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158357 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 tgacaccaaaacacaagcaac 225 ||||||||||||||||||||| Sbjct: 149491 tgacaccaaaacacaagcaac 149471
>emb|AL355099.5|CNS05TCI Human chromosome 14 DNA sequence BAC R-1A16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 155827 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 tgacaccaaaacacaagcaac 225 ||||||||||||||||||||| Sbjct: 48528 tgacaccaaaacacaagcaac 48508
>emb|BX511175.6| Zebrafish DNA sequence from clone DKEY-197A18 in linkage group 21, complete sequence Length = 134295 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atggcaagaaagtaagagtg 206 |||||||||||||||||||| Sbjct: 85238 atggcaagaaagtaagagtg 85219
>emb|CT963075.5| M.truncatula DNA sequence from clone MTH2-22G12 on chromosome 3, complete sequence Length = 75163 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tgaaggaattgtatgagaag 291 |||||||||||||||||||| Sbjct: 34030 tgaaggaattgtatgagaag 34011
>ref|XM_001126706.1| PREDICTED: Homo sapiens zinc finger protein 654 (ZNF654), mRNA Length = 6312 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 gaaagtaagagtgacaccaaaaca 217 |||| ||||||||||||||||||| Sbjct: 539 gaaaataagagtgacaccaaaaca 516
>ref|NM_127526.2| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational mechanism / hydrogen-transporting ATPase, rotational mechanism (AT2G19680) mRNA, complete cds Length = 640 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tgttcttcaataagttcttt 346 |||||||||||||||||||| Sbjct: 313 tgttcttcaataagttcttt 294
>gb|AC137824.25| Medicago truncatula clone mth2-10l10, complete sequence Length = 114536 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tgaaggaattgtatgagaag 291 |||||||||||||||||||| Sbjct: 50180 tgaaggaattgtatgagaag 50161
>gb|AC139321.4| Mus musculus BAC clone RP24-425N6 from chromosome 1, complete sequence Length = 148379 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 4 aacttgaaaagctaaataaaatggataa 31 |||||||||| || |||||||||||||| Sbjct: 99929 aacttgaaaatctgaataaaatggataa 99902
>gb|AF117829.3| Homo sapiens chromosome 8 multiple clones map q21.3, complete sequence Length = 320187 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 129095 ttgaaaagataaataaaatggata 129118
>gb|AC121888.3| Mus musculus BAC clone RP24-142M5 from chromosome 1, complete sequence Length = 158354 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 4 aacttgaaaagctaaataaaatggataa 31 |||||||||| || |||||||||||||| Sbjct: 6205 aacttgaaaatctgaataaaatggataa 6178
>gb|AY425004.1| Homo sapiens estrogen receptor 1 (ESR1) gene, complete cds Length = 299637 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 166310 ttgaaaagataaataaaatggata 166333
>gb|AC092963.4| Homo sapiens 3q BAC RP11-396A13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 145390 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 141375 ttgaaaagataaataaaatggata 141352
>gb|AC084117.6| Homo sapiens chromosome 11, clone RP11-107C21, complete sequence Length = 166973 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 ||||||||||||||||||| |||| Sbjct: 140280 ttgaaaagctaaataaaattgata 140257
>gb|AC027544.11| Homo sapiens chromosome 11, clone RP11-613F22, complete sequence Length = 196410 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 ||||||||||||||||||| |||| Sbjct: 183977 ttgaaaagctaaataaaattgata 184000
>gb|AC098692.3| Homo sapiens chromosome 1 clone RP11-60K15, complete sequence Length = 78331 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 tcccatagagtttcttcaca 263 |||||||||||||||||||| Sbjct: 9799 tcccatagagtttcttcaca 9818
>emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, complete sequence Length = 195301 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 65883 ttgaaaagataaataaaatggata 65860
>gb|AC099781.2| Homo sapiens chromosome 3 clone RP11-791E14, complete sequence Length = 200704 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 14226 ttgaaaagataaataaaatggata 14203
>gb|AC106856.5| Homo sapiens chromosome 8, clone RP11-64A23, complete sequence Length = 165059 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 1306 ttgaaaagataaataaaatggata 1329
>gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete sequence Length = 126386 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 tgttcttcaataagttcttt 346 |||||||||||||||||||| Sbjct: 120895 tgttcttcaataagttcttt 120914
>gb|AC108470.3| Homo sapiens BAC clone RP11-523D1 from 4, complete sequence Length = 88110 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 59285 ttgaaaagataaataaaatggata 59262
>gb|AC087258.14| Homo sapiens 12p BAC RP11-686N4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127018 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 aaagctaaataaaatggata 30 |||||||||||||||||||| Sbjct: 107049 aaagctaaataaaatggata 107030
>gb|AC021518.12| Homo sapiens chromosome 8, clone RP11-313D2, complete sequence Length = 169566 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 acaccaaaacacaagcaaca 226 |||||||||||||||||||| Sbjct: 88621 acaccaaaacacaagcaaca 88640
>gb|AC012535.11| Homo sapiens chromosome 8, clone RP11-115G12, complete sequence Length = 173414 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 acaccaaaacacaagcaaca 226 |||||||||||||||||||| Sbjct: 102505 acaccaaaacacaagcaaca 102524
>gb|AY072517.1| Arabidopsis thaliana copia-like retroelement pol polyprotein (At2g19680; F6F22.29) mRNA, complete cds Length = 519 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tgttcttcaataagttcttt 346 |||||||||||||||||||| Sbjct: 247 tgttcttcaataagttcttt 228
>gb|AC096674.3| Homo sapiens chromosome 1 clone RP11-59A2, complete sequence Length = 176747 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 70031 ttgaaaagataaataaaatggata 70008
>gb|AC090802.6| Homo sapiens chromosome 8, clone RP11-152P17, complete sequence Length = 162549 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 140580 ttgaaaagataaataaaatggata 140603
>gb|AC074191.3| Homo sapiens chromosome 11 clone RP11-502G22, complete sequence Length = 179357 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 tgaaaagctaaataaaatggataa 31 |||||| ||||||||||||||||| Sbjct: 157279 tgaaaatctaaataaaatggataa 157256
>emb|AL662874.9| Human DNA sequence from clone RP13-24G8 on chromosome X Contains a novel gene, a delta sleep inducing peptide, immunoreactor (DSIPI) pseudogene, the PABPC5 gene for poly(A) binding protein, cytoplasmic 5 and a CpG island, complete sequence Length = 160906 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tgacaccaaaacacaagcaa 224 |||||||||||||||||||| Sbjct: 49032 tgacaccaaaacacaagcaa 49013
>emb|AL592168.5| Human DNA sequence from clone RP11-415K3 on chromosome Xp21.1-21.2, complete sequence Length = 36708 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tgacaccaaaacacaagcaa 224 |||||||||||||||||||| Sbjct: 32277 tgacaccaaaacacaagcaa 32258
>emb|AL603791.3| Human DNA sequence from clone RP11-44E1 on chromosome 1 Contains part of the KCNH1 gene for a potassium voltage-gated channel, subfamily H (eag-related), member, complete sequence Length = 17716 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 1803 ttgaaaagataaataaaatggata 1826
>emb|AL589167.10| Human DNA sequence from clone RP11-236O12 on chromosome Xq13.3-21.2 Contains an STS and GSSs, complete sequence Length = 120255 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 34801 ttgaaaagataaataaaatggata 34778
>emb|AL590132.7| Human DNA sequence from clone RP11-255G4 on chromosome 1 Contains part of the KCNH1 gene for a potassium voltage-gated channel, subfamily H (eag-related), member, complete sequence Length = 150090 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 149893 ttgaaaagataaataaaatggata 149916
>emb|AL135923.15| Human DNA sequence from clone RP11-29B9 on chromosome 9p23-24.3 Contains two novel genes, complete sequence Length = 152470 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 tgacaccaaaacacaagcaa 224 |||||||||||||||||||| Sbjct: 34379 tgacaccaaaacacaagcaa 34398
>emb|AL117350.12|HSJ803J11 Human DNA sequence from clone RP4-803J11 on chromosome 1 Contains the 3' end of the RAB4A gene for RAB4A, member RAS oncogene family, a novel gene, a novel gene (LOC126731) and a CpG island, complete sequence Length = 106441 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 84050 ttgaaaagataaataaaatggata 84027
>emb|AL121865.7|HSA119E20 Human DNA sequence from clone RP11-119E20 on chromosome Xp11.21-11.23 Contains the 3' end of gene KIAA1202, complete sequence Length = 156413 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 tctcttattcttttcattta 472 |||||||||||||||||||| Sbjct: 86833 tctcttattcttttcattta 86852
>emb|AL049821.6|HSDJ63I5 Human DNA sequence from clone RP1-63I5 on chromosome 6q25.1-26 Contains part of the ESR1 gene for estrogen receptor 1, complete sequence Length = 87705 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 10545 ttgaaaagataaataaaatggata 10568
>emb|CR381637.5| Zebrafish DNA sequence from clone DKEY-225P19 in linkage group 21, complete sequence Length = 171229 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atggcaagaaagtaagagtg 206 |||||||||||||||||||| Sbjct: 10077 atggcaagaaagtaagagtg 10058
>gb|AY085346.1| Arabidopsis thaliana clone 14718 mRNA, complete sequence Length = 641 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tgttcttcaataagttcttt 346 |||||||||||||||||||| Sbjct: 314 tgttcttcaataagttcttt 295
>emb|AL161503.2|ATCHRIV15 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 15 Length = 199987 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 464 tttcatttagttgtcaagttggat 487 ||||||||| |||||||||||||| Sbjct: 11963 tttcatttatttgtcaagttggat 11940
>gb|AC013492.5|AC013492 Homo sapiens chromosome , clone RP11-32K4, complete sequence Length = 167174 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 acaccaaaacacaagcaaca 226 |||||||||||||||||||| Sbjct: 19989 acaccaaaacacaagcaaca 20008
>gb|AF370542.1|AF370542 Arabidopsis thaliana copia-like retroelement pol polyprotein (At2g19680; F6F22.29) mRNA, complete cds Length = 638 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tgttcttcaataagttcttt 346 |||||||||||||||||||| Sbjct: 312 tgttcttcaataagttcttt 293
>gb|AC138940.3| Homo sapiens chromosome 5 clone RP11-704G19, complete sequence Length = 182305 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 442 attatgtgaactctcttattcttt 465 ||||||||||||||||| |||||| Sbjct: 72587 attatgtgaactctctttttcttt 72610
>gb|AC152920.17| Medicago truncatula clone mth2-101o15, complete sequence Length = 124934 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tgaaggaattgtatgagaag 291 |||||||||||||||||||| Sbjct: 36571 tgaaggaattgtatgagaag 36552
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ggaacttgaaaagctaaata 21 |||||||||||||||||||| Sbjct: 838601 ggaacttgaaaagctaaata 838582
>gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complete sequence Length = 151319 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 tgaaaagctaaataaaatggataa 31 ||||||| |||||||||||||||| Sbjct: 118645 tgaaaagataaataaaatggataa 118668
>gb|AC019172.4| Homo sapiens BAC clone RP11-178E6 from 2, complete sequence Length = 176983 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 7248 ttgaaaagataaataaaatggata 7271
>gb|AC069275.3|AC069275 Homo sapiens chromosome 3 clone RP11-194C9 map 3p, complete sequence Length = 151142 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 ||||||||||||||||||| |||| Sbjct: 137520 ttgaaaagctaaataaaattgata 137543
>gb|AC023472.4|AC023472 Homo sapiens chromosome 3 clone RP11-156B21 map 3p, complete sequence Length = 167220 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 ||||||||||||||||||| |||| Sbjct: 100807 ttgaaaagctaaataaaattgata 100830
>gb|AC015600.8| Homo sapiens chromosome 11, clone RP11-45C5, complete sequence Length = 154158 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 80573 ttgaaaagttaaataaaatggata 80550
>gb|AC126172.8| Homo sapiens 12 BAC RP11-654C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111943 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 82310 ttgaaaagataaataaaatggata 82333
>gb|AC007511.8|AC007511 Homo sapiens, clone RP11-84A1, complete sequence Length = 168822 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 27659 ttgaaaagataaataaaatggata 27636
>emb|BX819507.1|CNS0AA8M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB85ZA06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 615 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tgttcttcaataagttcttt 346 |||||||||||||||||||| Sbjct: 289 tgttcttcaataagttcttt 270
>gb|AC008783.5|AC008783 Homo sapiens chromosome 5 clone CTD-2027E7, complete sequence Length = 100184 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 442 attatgtgaactctcttattcttt 465 ||||||||||||||||| |||||| Sbjct: 18012 attatgtgaactctctttttcttt 17989
>gb|AC144341.25| Medicago truncatula clone mth2-22g22, complete sequence Length = 107559 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tgaaggaattgtatgagaag 291 |||||||||||||||||||| Sbjct: 88220 tgaaggaattgtatgagaag 88201
>gb|AC004459.1|AC004459 Homo sapiens BAC clone CTA-273G1 from 8q21, complete sequence Length = 41798 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 31073 ttgaaaagataaataaaatggata 31096
>gb|AC007126.6|AC007126 Homo sapiens chromosome 4 clone C0496D08, complete sequence Length = 218698 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 84859 ttgaaaagataaataaaatggata 84836
>gb|AC012477.1|AC012477 Genomic Sequence For Arabidopsis thaliana Clone C6L9, Chromosome IV, complete sequence Length = 145453 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 464 tttcatttagttgtcaagttggat 487 ||||||||| |||||||||||||| Sbjct: 103333 tttcatttatttgtcaagttggat 103356
>gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis thaliana clone C17L7, Chromosome IV, complete sequence Length = 183147 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 464 tttcatttagttgtcaagttggat 487 ||||||||| |||||||||||||| Sbjct: 47584 tttcatttatttgtcaagttggat 47607
>emb|AL357201.1|IROEST094 Homo sapiens EST from clone 60991, 5' end Length = 625 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 gaaagtaagagtgacaccaaaaca 217 |||| ||||||||||||||||||| Sbjct: 539 gaaaataagagtgacaccaaaaca 516
>emb|AL359220.4|CNS05TEI Human chromosome 14 DNA sequence BAC R-855C23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196698 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ttgaaagcaaagcagaccct 86 |||||||||||||||||||| Sbjct: 1464 ttgaaagcaaagcagaccct 1483
>emb|CT025156.14| M.truncatula DNA sequence from clone MTH2-117A9 on chromosome 3, complete sequence Length = 113846 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 tgaaggaattgtatgagaag 291 |||||||||||||||||||| Sbjct: 112333 tgaaggaattgtatgagaag 112352
>emb|BX927341.21| Zebrafish DNA sequence from clone DKEY-56J1 in linkage group 14, complete sequence Length = 203575 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 agatgcaaatgctggttttt 178 |||||||||||||||||||| Sbjct: 88639 agatgcaaatgctggttttt 88620
>ref|NM_131338.1| Danio rerio complement factor B (cfb), mRNA gb|U34662.1|DRU34662 Danio rerio complement factor B mRNA, complete cds Length = 2409 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atggcaagaaagtaagagtg 206 |||||||||||||||||||| Sbjct: 2307 atggcaagaaagtaagagtg 2288
>emb|AL808109.6| Mouse DNA sequence from clone RP23-435P19 on chromosome 4, complete sequence Length = 51860 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 attcttttcccatagagttt 256 |||||||||||||||||||| Sbjct: 47356 attcttttcccatagagttt 47375
>emb|AL160234.3|CNS01RGY Human chromosome 14 DNA sequence BAC R-22F22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 155735 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ttgaaagcaaagcagaccct 86 |||||||||||||||||||| Sbjct: 46935 ttgaaagcaaagcagaccct 46916
>gb|AC018832.5| Homo sapiens chromosome 3 clone RP11-481O7 map 3p, complete sequence Length = 185496 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 ttgaaaagctaaataaaatggata 30 ||||||||||||||||||| |||| Sbjct: 66472 ttgaaaagctaaataaaattgata 66495
>gb|AC098478.2| Homo sapiens chromosome 3 clone RP11-750K11, complete sequence Length = 217346 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttgaaaagctaaataaaatggata 30 |||||||| ||||||||||||||| Sbjct: 212486 ttgaaaagataaataaaatggata 212463 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 109,496,610 Number of extensions: 5846047 Number of successful extensions: 124240 Number of sequences better than 10.0: 101 Number of HSP's gapped: 124240 Number of HSP's successfully gapped: 103 Length of query: 531 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 509 Effective length of database: 18,508,616,841 Effective search space: 9420885972069 Effective search space used: 9420885972069 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)