ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf15b18 |
|---|---|
| Clone Library Name | barley_pub |
>Q872I5:INO80_NEUCR Putative DNA helicase ino-80 - Neurospora crassa| Length = 2001 Score = 34.7 bits (78), Expect = 0.64 Identities = 27/91 (29%), Positives = 43/91 (47%) Frame = +1 Query: 7 PPTDRQTDPSHLLVSHGGSRRPSPEQRALPLAAGGGVGRADPVAPGRRSKCRFSDVSAHV 186 PP+ Q P+ + G P+P +LPL+A GG+G + V+ + R S + H Sbjct: 200 PPSSLQAPPA--ITPIAGLSAPAPASGSLPLSA-GGIGNSITVSSSSQPPARASQL--HA 254 Query: 187 PDAHARDVPPAGYG*PDSASRDICHTGESVH 279 P A+ P + DS+ R+ TG S + Sbjct: 255 PSAYYS--PAESFRDRDSSVREKSSTGGSFY 283
>Q7M6U3:TEX14_MOUSE Testis-expressed protein 14 - Mus musculus (Mouse)| Length = 1450 Score = 33.5 bits (75), Expect = 1.4 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Frame = +2 Query: 2 RPHPQTDRQ---TPPTFSSPMAEADAQAQS--NAHSPSPPVEASGEPIRSPQVGAPSAAS 166 +PH TD PT + ++ AQ NA+ PSPP E +RSP S S Sbjct: 562 QPHSPTDHSFLTVKPTLAPQTLDSSLSAQKPDNANVPSPPAACLAEEVRSPTASQDSLCS 621
>Q9NP08:HMX1_HUMAN Homeobox protein HMX1 - Homo sapiens (Human)| Length = 373 Score = 33.5 bits (75), Expect = 1.4 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Frame = +1 Query: 70 PSPEQRALPLAAGG-GVGRADPVAPGRRSKCRFSDVSAHVPDAHARDVPPAGYG*---PD 237 P E RA+P AG G+G P PG P AH GYG PD Sbjct: 76 PGGEARAVPARAGALGLGPRPPPGPGPPFALGCGGAGRWYPRAHG------GYGGGLSPD 129 Query: 238 SASRDICHTGESVHGGDG 291 ++ RD TGE + +G Sbjct: 130 TSDRDSPETGEEMGRAEG 147
>Q8CFC7:SFR16_MOUSE Splicing factor, arginine/serine-rich 16 - Mus musculus (Mouse)| Length = 653 Score = 33.1 bits (74), Expect = 1.9 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +2 Query: 44 SSPMAEADAQAQSNAHSPSPPVEASGEPIRSPQVG 148 S + + + +QS +HSPSPP E P SP VG Sbjct: 496 SRSRSRSQSHSQSQSHSPSPPREKLTRPAASPAVG 530
>P47806:GLI1_MOUSE Zinc finger protein GLI1 - Mus musculus (Mouse)| Length = 1111 Score = 32.7 bits (73), Expect = 2.4 Identities = 22/76 (28%), Positives = 32/76 (42%) Frame = -3 Query: 269 SPVWHISLDAESGHPYPAGGTSLA*ASGT*AETSEKRHLERRPGATGSARPTPPPAARGS 90 S + +S + P+P G AS T + ++ R A+ TPP AA Sbjct: 552 SSAYTVSRRSSLASPFPPGTPPENGASSLPGLTPAQHYMLRARYASARGSGTPPTAAHSL 611 Query: 89 ARCSGLGRRLPPWETR 42 R GL +PPW +R Sbjct: 612 DRMGGLS--VPPWRSR 625
>Q5DRE3:PCDA9_PANTR Protocadherin alpha 9 precursor - Pan troglodytes (Chimpanzee)| Length = 950 Score = 32.7 bits (73), Expect = 2.4 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 11/114 (9%) Frame = +1 Query: 4 APPTDRQTDPSHLLVSHGGSRRPSPEQR-ALPLAAG---------GGVGRADPVAPGRRS 153 A T+R +PS S G R+P+P+ R + L AG G+ RA P P + Sbjct: 780 AGSTERTGEPSASSDSSGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQ-- 837 Query: 154 KCRFSDVSAHVPDAHARDV-PPAGYG*PDSASRDICHTGESVHGGDGRLRSKDI 312 ++ VS+ P+ A +V PP G G ++ G G G L K I Sbjct: 838 --QWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFI 889
>Q9Y5H5:PCDA9_HUMAN Protocadherin alpha 9 precursor - Homo sapiens (Human)| Length = 950 Score = 32.3 bits (72), Expect = 3.2 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 11/114 (9%) Frame = +1 Query: 4 APPTDRQTDPSHLLVSHGGSRRPSPEQR-ALPLAAG---------GGVGRADPVAPGRRS 153 A T+R +PS S G R+P+P+ R + L AG G+ RA P P + Sbjct: 780 AGSTERTGEPSASSDSTGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQ-- 837 Query: 154 KCRFSDVSAHVPDAHARDV-PPAGYG*PDSASRDICHTGESVHGGDGRLRSKDI 312 ++ VS+ P+ A +V PP G G ++ G G G L K I Sbjct: 838 --QWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFI 889
>Q9Y2D5:AKAP2_HUMAN A-kinase anchor protein 2 - Homo sapiens (Human)| Length = 872 Score = 32.3 bits (72), Expect = 3.2 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +2 Query: 5 PHPQTDRQTPPTFSSPMAEADAQAQSNAHSPSPPVEASGEPIRSP 139 PH + +P PMAEA+ ++N HSPS P +A G+ ++ P Sbjct: 113 PHIELSNSSP----DPMAEAE---RTNGHSPSQPRDALGDSLQVP 150
>Q8WUU4:ZN342_HUMAN Zinc finger protein 342 - Homo sapiens (Human)| Length = 475 Score = 32.0 bits (71), Expect = 4.1 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = +2 Query: 8 HPQTDRQTPPTFSSPMAEADAQAQSNAHSPSPPVEASGEPIRSPQVGAPSAAS 166 H +T RQ PP SP+ +Q Q++A P P V A+ P G A + Sbjct: 277 HKKTHRQVPP--QSPLMADTSQEQASAAPPEPAVHAAAPTSTLPCSGGEGAGA 327
>Q9V853:SMUF1_DROME E3 ubiquitin-protein ligase Smurf1 - Drosophila melanogaster (Fruit| fly) Length = 1061 Score = 32.0 bits (71), Expect = 4.1 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = +1 Query: 1 EAPPTDRQTDPSHLLVSHGGSRRPSPEQRALPLAAGGGVGRADPVAPGRRSKCRFS 168 ++PPT + P+ + S G+ SP + P +GGG PG+RS+ R S Sbjct: 408 QSPPTPNISPPASVTPSANGNVH-SPNANSTPAGSGGGSRSYTAATPGQRSQRRSS 462
>Q13485:SMAD4_HUMAN Mothers against decapentaplegic homolog 4 - Homo sapiens (Human)| Length = 552 Score = 32.0 bits (71), Expect = 4.1 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 2/42 (4%) Frame = +2 Query: 8 HPQTDRQTPPTFSSP--MAEADAQAQSNAHSPSPPVEASGEP 127 HP ++R + T+S+P +A +++ A S A+ P+ PV ++ +P Sbjct: 184 HPPSNRASTETYSTPALLAPSESNATSTANFPNIPVASTSQP 225
>Q9TTM9:ADA1D_PIG Alpha-1D adrenergic receptor - Sus scrofa (Pig)| Length = 571 Score = 32.0 bits (71), Expect = 4.1 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 677 DQLPGVVDPANPDQAAENQEPGAAAGDENQQGAEGEANRRSWLGGILKEVQLVVVG-FVA 853 D +PG A ++ ++AG+ GA GE N + +GG++ Q V VG F+A Sbjct: 44 DGVPGTAGSGGVVGAGSDENNRSSAGEPGAAGAGGEVNGTAAVGGLVVSAQGVGVGVFLA 103 Query: 854 SLL 862 + + Sbjct: 104 AFI 106
>Q39586:METE_CHLRE 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase - Chlamydomonas reinhardtii Length = 814 Score = 30.0 bits (66), Expect(2) = 4.4 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Frame = +3 Query: 153 QVPLLRCFRSCTRCSCQGCSPSRVWMT-----RLSVQGYMPY 263 Q PLL+ + CSC GCS +R W T RLS PY Sbjct: 386 QPPLLQLVMA-PWCSCSGCSRARAWRTTPPTSRLSGSAAKPY 426 Score = 20.4 bits (41), Expect(2) = 4.4 Identities = 9/26 (34%), Positives = 11/26 (42%) Frame = +2 Query: 32 PPTFSSPMAEADAQAQSNAHSPSPPV 109 PP F+ E A SP PP+ Sbjct: 364 PPGFAKQKVEEIVSVARLAASPQPPL 389
>P97471:SMAD4_MOUSE Mothers against decapentaplegic homolog 4 - Mus musculus (Mouse)| Length = 551 Score = 31.6 bits (70), Expect = 5.4 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%) Frame = +2 Query: 8 HPQTDRQTPPTFSSP--MAEADAQAQSNAHSPSPPVEASGEP 127 HP ++R + T+S+P +A A++ A S + P+ PV ++ +P Sbjct: 183 HPPSNRASTETYSAPALLAPAESNATSTTNFPNIPVASTSQP 224
>Q8WXD9:CSKI1_HUMAN Caskin-1 - Homo sapiens (Human)| Length = 1431 Score = 31.6 bits (70), Expect = 5.4 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +2 Query: 5 PHPQTDRQTPPTFSSPMAEADAQAQSNAHSPSPPVEASGEPIRSPQVGAPSAAS 166 P P RQ P + P + S A PSP A P + P+ A +AA+ Sbjct: 1299 PAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAA 1352
>Q7Z2K8:GRIN1_HUMAN G protein-regulated inducer of neurite outgrowth 1 - Homo sapiens| (Human) Length = 1008 Score = 31.2 bits (69), Expect = 7.0 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Frame = -3 Query: 287 SPP*TDSPVWHISLDAESGHPYPAGGTSLA*ASGT*AETSEKRHLERRPGATG-SARPTP 111 +PP PV +S D E G + G ++ + ++HLER+ G P P Sbjct: 902 APPEPAEPVRDVSWD-EKGMTWEVYGAAMEVEV---LGMAIQKHLERQIEEHGRQGAPAP 957 Query: 110 PPAARGSARCSGLGRRLPP 54 PPAAR SG R PP Sbjct: 958 PPAARAGPGRSGSVRTAPP 976
>Q28838:ADA2A_BOVIN Alpha-2A adrenergic receptor - Bos taurus (Bovine)| Length = 452 Score = 31.2 bits (69), Expect = 7.0 Identities = 22/59 (37%), Positives = 28/59 (47%) Frame = -3 Query: 254 ISLDAESGHPYPAGGTSLA*ASGT*AETSEKRHLERRPGATGSARPTPPPAARGSARCS 78 + L+ G P PAG + A E+S H ER PG+ S R P A+G AR S Sbjct: 273 VQLNGAPGEPAPAGAGADALDL---EESSSSEHAERPPGSRRSER---GPRAKGKARAS 325
>Q9BSI4:TINF2_HUMAN TERF1-interacting nuclear factor 2 - Homo sapiens (Human)| Length = 451 Score = 31.2 bits (69), Expect = 7.1 Identities = 19/50 (38%), Positives = 22/50 (44%) Frame = +1 Query: 730 PGTRGSSGR*EPARGGGRSKPAQLARRHLERGPAGRCRVRRVASSWFSTQ 879 P + G P R+ P LA RH P GR RRV S W ST+ Sbjct: 230 PLPKAKPGTHLPQGPSSRTHPEPLAGRHFNLAPLGR---RRVQSQWASTR 276
>P23246:SFPQ_HUMAN Splicing factor, proline- and glutamine-rich - Homo sapiens (Human)| Length = 707 Score = 31.2 bits (69), Expect = 7.1 Identities = 16/51 (31%), Positives = 20/51 (39%) Frame = +2 Query: 2 RPHPQTDRQTPPTFSSPMAEADAQAQSNAHSPSPPVEASGEPIRSPQVGAP 154 +PH Q PP SS A + +PP +S P P GAP Sbjct: 92 QPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAP 142
>Q80XA6:REPS2_MOUSE RalBP1-associated Eps domain-containing protein 2 - Mus musculus| (Mouse) Length = 521 Score = 31.2 bits (69), Expect = 7.1 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +2 Query: 5 PHPQTDRQTPPTFSSPMAEADAQAQSNAHSPSPPVEASGEPIRSPQVGAPS 157 P P + PT S P++EAD +Q N +PS E+S + +P PS Sbjct: 375 PPPALPPRPCPTQSEPVSEADLHSQLN-RAPSQAAESSPTKMDAPHAQPPS 424
>P04073:PEPC_RAT Gastricsin precursor - Rattus norvegicus (Rat)| Length = 392 Score = 31.2 bits (69), Expect = 7.1 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%) Frame = -2 Query: 204 PGMSIG----YMSGNIGEAALGAPTWGDRIGSPDASTGGE 97 PG+S G + G +GE AL P +G +GS S GG+ Sbjct: 188 PGLSSGGATTALQGMLGEGALSQPLFGVYLGSQQGSNGGQ 227
>Q9D7R7:PEPC_MOUSE Gastricsin precursor - Mus musculus (Mouse)| Length = 392 Score = 31.2 bits (69), Expect = 7.1 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%) Frame = -2 Query: 204 PGMSIG----YMSGNIGEAALGAPTWGDRIGSPDASTGGE 97 PG+S G + G +GE AL P +G +GS S GG+ Sbjct: 188 PGLSSGGATTALQGMLGEGALSQPLFGVYLGSQQGSNGGQ 227
>P27884:CAC1A_RABIT Voltage-dependent P/Q-type calcium channel subunit alpha-1A -| Oryctolagus cuniculus (Rabbit) Length = 2424 Score = 31.2 bits (69), Expect = 7.1 Identities = 21/54 (38%), Positives = 22/54 (40%) Frame = +1 Query: 61 SRRPSPEQRALPLAAGGGVGRADPVAPGRRSKCRFSDVSAHVPDAHARDVPPAG 222 +RRP P QR P GG GRA APG R AR PAG Sbjct: 2282 ARRPRPRQRRRPRRRRGGGGRALRRAPGPREPLAQDSPGRGPSVCLARAARPAG 2335
>Q8RSY1:HPAB2_PSESM Effector protein hopAB2 - Pseudomonas syringae pv. tomato| Length = 553 Score = 30.8 bits (68), Expect = 9.2 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = -3 Query: 233 GHPYPAGGTSLA*ASGT*AETSEKRHLERRPGAT-GSARPTPPPAARGS-ARCSGLGRRL 60 GH P + A SG+ A +S ++ RP T S P PPP R +R + L R+ Sbjct: 16 GHTDPEPVSGQAHGSGSGASSSNSPQVQPRPSNTPPSNAPAPPPTGRERLSRSTALSRQT 75 Query: 59 PPW 51 W Sbjct: 76 REW 78
>Q5GZ90:GLUQ_XANOR Glutamyl-Q tRNA(Asp) synthetase - Xanthomonas oryzae pv. oryzae| Length = 299 Score = 30.8 bits (68), Expect = 9.2 Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = -2 Query: 807 PSQLRRFA-SPSAPCWFSSPAAAPGSWFSAAWSG 709 PS L RFA SP+ P F S AA GSW A +G Sbjct: 4 PSYLGRFAPSPTGPLHFGSLLAAFGSWLLARHAG 37 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 184,221,490 Number of extensions: 4277559 Number of successful extensions: 17595 Number of sequences better than 10.0: 25 Number of HSP's gapped: 17513 Number of HSP's successfully gapped: 26 Length of query: 338 Length of database: 100,686,439 Length adjustment: 114 Effective length of query: 224 Effective length of database: 69,416,809 Effective search space: 15549365216 Effective search space used: 15549365216 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
