ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf11o19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001055437.1| Oryza sativa (japonica cultivar-group) Os03g0137500 (Os03g0137500) mRNA, complete cds Length = 1604 Score = 345 bits (174), Expect = 2e-91 Identities = 453/546 (82%) Strand = Plus / Plus Query: 147 aaggatgagcaaaggcccggttccgttccctatctttgggaagaaagcaagagatatctt 206 |||||||||||||||||| | |||||||| | | ||||||||| ||||| |||| | || Sbjct: 174 aaggatgagcaaaggcccagctccgttcctcaacattgggaagagagcaaaagatctttt 233 Query: 207 gtacaaggactacaattttgaccaaaagttttcatggtcaacaactagcgaatttgggtt 266 ||||||||||||||||||||||||||||||||| | | ||||||||| | | ||| || Sbjct: 234 gtacaaggactacaattttgaccaaaagttttctttaacgacaactagcaattctggttt 293 Query: 267 gagtgtcacagctgctggcgtgaagtttgatgaactcttcatcggtgacatacgggtaca 326 | || | ||||| | || |||||| | || |||||||||||||||||||||| | ||| Sbjct: 294 gggtctaacagccaccggtgtgaagatagacgaactcttcatcggtgacatacagacaca 353 Query: 327 acataaaagtggtagaaatactgttgatgtcacaatagattgcgactccaaagtgtcaac 386 |||||||||||| | || ||||||||||||| || ||| | || || | ||||||||| Sbjct: 354 acataaaagtggcaaaaccactgttgatgtcaagattgatagtgaatctagagtgtcaac 413 Query: 387 cgcggtcacttttgatgaagtagtccctggtttgaagacttctttcggcttcaaggttcc 446 | | |||||| ||||||||| | ||||| ||||||||||||| |||||| |||||| Sbjct: 414 cacagtcactgttgatgaagcccttactggtctgaagacttcttttagcttcagggttcc 473 Query: 447 tgatcaaaagtcagggaagctcgatttgcaataccttcatgatcgcttcgcactgaattc 506 |||||||||||| |||||||| |||||||||||||||||||| | || ||||||||||| Sbjct: 474 tgatcaaaagtccgggaagcttgatttgcaataccttcatgaccattttgcactgaattc 533 Query: 507 aaccattgggctgacgtcggcacctgtaatcgagctggcaacaactattggcacaaacga 566 |||||||| |||| || | ||| |||| ||||||||| ||||||| ||||| || || Sbjct: 534 taccattggtttgacatcaacgcctttaattgagctggcagcaactatcggcacgaatga 593 Query: 567 actcgccgtcggtggtgaggttgggtttgacagtacttcagcttctgttaccaagtacaa 626 ||| | |||| ||||||||| || ||||| ||||||||||||||||| |||||||| Sbjct: 594 acttagtgctggtgctgaggttggattcgacagcacttcagcttctgttactaagtacaa 653 Query: 627 ctcaggaatcagctataccaaagatgatttttctgccgccttactattggctgacaaagg 686 |||||| ||| |||||| |||| ||||||||||||| ||| ||||||||||||| ||||| Sbjct: 654 ctcagggatctgctataacaaacatgatttttctgctgccgtactattggctgataaagg 713 Query: 687 ggagac 692 |||||| Sbjct: 714 ggagac 719 Score = 46.1 bits (23), Expect = 0.32 Identities = 44/51 (86%) Strand = Plus / Plus Query: 907 gccgagtacgaccccaaggtggtgagctcgccggcaaggttcggcgtggcc 957 |||||||| || ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 940 gccgagtatgatcccaaagtggtgagttcgccttcaagattcggcgtggcc 990 Score = 42.1 bits (21), Expect = 4.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 862 ctctgccagcacgagtggaggcccaagtc 890 ||||| ||||| ||||||||||||||||| Sbjct: 895 ctctgtcagcatgagtggaggcccaagtc 923
>dbj|AK100231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049J19, full insert sequence Length = 1608 Score = 345 bits (174), Expect = 2e-91 Identities = 453/546 (82%) Strand = Plus / Plus Query: 147 aaggatgagcaaaggcccggttccgttccctatctttgggaagaaagcaagagatatctt 206 |||||||||||||||||| | |||||||| | | ||||||||| ||||| |||| | || Sbjct: 179 aaggatgagcaaaggcccagctccgttcctcaacattgggaagagagcaaaagatctttt 238 Query: 207 gtacaaggactacaattttgaccaaaagttttcatggtcaacaactagcgaatttgggtt 266 ||||||||||||||||||||||||||||||||| | | ||||||||| | | ||| || Sbjct: 239 gtacaaggactacaattttgaccaaaagttttctttaacgacaactagcaattctggttt 298 Query: 267 gagtgtcacagctgctggcgtgaagtttgatgaactcttcatcggtgacatacgggtaca 326 | || | ||||| | || |||||| | || |||||||||||||||||||||| | ||| Sbjct: 299 gggtctaacagccaccggtgtgaagatagacgaactcttcatcggtgacatacagacaca 358 Query: 327 acataaaagtggtagaaatactgttgatgtcacaatagattgcgactccaaagtgtcaac 386 |||||||||||| | || ||||||||||||| || ||| | || || | ||||||||| Sbjct: 359 acataaaagtggcaaaaccactgttgatgtcaagattgatagtgaatctagagtgtcaac 418 Query: 387 cgcggtcacttttgatgaagtagtccctggtttgaagacttctttcggcttcaaggttcc 446 | | |||||| ||||||||| | ||||| ||||||||||||| |||||| |||||| Sbjct: 419 cacagtcactgttgatgaagcccttactggtctgaagacttcttttagcttcagggttcc 478 Query: 447 tgatcaaaagtcagggaagctcgatttgcaataccttcatgatcgcttcgcactgaattc 506 |||||||||||| |||||||| |||||||||||||||||||| | || ||||||||||| Sbjct: 479 tgatcaaaagtccgggaagcttgatttgcaataccttcatgaccattttgcactgaattc 538 Query: 507 aaccattgggctgacgtcggcacctgtaatcgagctggcaacaactattggcacaaacga 566 |||||||| |||| || | ||| |||| ||||||||| ||||||| ||||| || || Sbjct: 539 taccattggtttgacatcaacgcctttaattgagctggcagcaactatcggcacgaatga 598 Query: 567 actcgccgtcggtggtgaggttgggtttgacagtacttcagcttctgttaccaagtacaa 626 ||| | |||| ||||||||| || ||||| ||||||||||||||||| |||||||| Sbjct: 599 acttagtgctggtgctgaggttggattcgacagcacttcagcttctgttactaagtacaa 658 Query: 627 ctcaggaatcagctataccaaagatgatttttctgccgccttactattggctgacaaagg 686 |||||| ||| |||||| |||| ||||||||||||| ||| ||||||||||||| ||||| Sbjct: 659 ctcagggatctgctataacaaacatgatttttctgctgccgtactattggctgataaagg 718 Query: 687 ggagac 692 |||||| Sbjct: 719 ggagac 724 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 907 gccgagtacgaccccaaggtggtgagctcgccggcaaggttcggcgtggc 956 |||||||| || ||||| |||||||| ||||| |||| ||||||||||| Sbjct: 945 gccgagtatgatcccaaagtggtgagttcgccttcaagattcggcgtggc 994 Score = 42.1 bits (21), Expect = 4.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 862 ctctgccagcacgagtggaggcccaagtc 890 ||||| ||||| ||||||||||||||||| Sbjct: 900 ctctgtcagcatgagtggaggcccaagtc 928
>dbj|AK073584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050N14, full insert sequence Length = 1242 Score = 345 bits (174), Expect = 2e-91 Identities = 453/546 (82%) Strand = Plus / Plus Query: 147 aaggatgagcaaaggcccggttccgttccctatctttgggaagaaagcaagagatatctt 206 |||||||||||||||||| | |||||||| | | ||||||||| ||||| |||| | || Sbjct: 130 aaggatgagcaaaggcccagctccgttcctcaacattgggaagagagcaaaagatctttt 189 Query: 207 gtacaaggactacaattttgaccaaaagttttcatggtcaacaactagcgaatttgggtt 266 ||||||||||||||||||||||||||||||||| | | ||||||||| | | ||| || Sbjct: 190 gtacaaggactacaattttgaccaaaagttttctttaacgacaactagcaattctggttt 249 Query: 267 gagtgtcacagctgctggcgtgaagtttgatgaactcttcatcggtgacatacgggtaca 326 | || | ||||| | || |||||| | || |||||||||||||||||||||| | ||| Sbjct: 250 gggtctaacagccaccggtgtgaagatagacgaactcttcatcggtgacatacagacaca 309 Query: 327 acataaaagtggtagaaatactgttgatgtcacaatagattgcgactccaaagtgtcaac 386 |||||||||||| | || ||||||||||||| || ||| | || || | ||||||||| Sbjct: 310 acataaaagtggcaaaaccactgttgatgtcaagattgatagtgaatctagagtgtcaac 369 Query: 387 cgcggtcacttttgatgaagtagtccctggtttgaagacttctttcggcttcaaggttcc 446 | | |||||| ||||||||| | ||||| ||||||||||||| |||||| |||||| Sbjct: 370 cacagtcactgttgatgaagcccttactggtctgaagacttcttttagcttcagggttcc 429 Query: 447 tgatcaaaagtcagggaagctcgatttgcaataccttcatgatcgcttcgcactgaattc 506 |||||||||||| |||||||| |||||||||||||||||||| | || ||||||||||| Sbjct: 430 tgatcaaaagtccgggaagcttgatttgcaataccttcatgaccattttgcactgaattc 489 Query: 507 aaccattgggctgacgtcggcacctgtaatcgagctggcaacaactattggcacaaacga 566 |||||||| |||| || | ||| |||| ||||||||| ||||||| ||||| || || Sbjct: 490 taccattggtttgacatcaacgcctttaattgagctggcagcaactatcggcacgaatga 549 Query: 567 actcgccgtcggtggtgaggttgggtttgacagtacttcagcttctgttaccaagtacaa 626 ||| | |||| ||||||||| || ||||| ||||||||||||||||| |||||||| Sbjct: 550 acttagtgctggtgctgaggttggattcgacagcacttcagcttctgttactaagtacaa 609 Query: 627 ctcaggaatcagctataccaaagatgatttttctgccgccttactattggctgacaaagg 686 |||||| ||| |||||| |||| ||||||||||||| ||| ||||||||||||| ||||| Sbjct: 610 ctcagggatctgctataacaaacatgatttttctgctgccgtactattggctgataaagg 669 Query: 687 ggagac 692 |||||| Sbjct: 670 ggagac 675 Score = 46.1 bits (23), Expect = 0.32 Identities = 44/51 (86%) Strand = Plus / Plus Query: 907 gccgagtacgaccccaaggtggtgagctcgccggcaaggttcggcgtggcc 957 |||||||| || ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 896 gccgagtatgatcccaaagtggtgagatcgccttcaagattcggcgtggcc 946 Score = 42.1 bits (21), Expect = 4.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 862 ctctgccagcacgagtggaggcccaagtc 890 ||||| ||||| ||||||||||||||||| Sbjct: 851 ctctgtcagcatgagtggaggcccaagtc 879
>dbj|AK060148.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-C01, full insert sequence Length = 1188 Score = 345 bits (174), Expect = 2e-91 Identities = 453/546 (82%) Strand = Plus / Plus Query: 147 aaggatgagcaaaggcccggttccgttccctatctttgggaagaaagcaagagatatctt 206 |||||||||||||||||| | |||||||| | | ||||||||| ||||| |||| | || Sbjct: 121 aaggatgagcaaaggcccagctccgttcctcaacattgggaagagagcaaaagatctttt 180 Query: 207 gtacaaggactacaattttgaccaaaagttttcatggtcaacaactagcgaatttgggtt 266 ||||||||||||||||||||||||||||||||| | | ||||||||| | | ||| || Sbjct: 181 gtacaaggactacaattttgaccaaaagttttctttaacgacaactagcaattctggttt 240 Query: 267 gagtgtcacagctgctggcgtgaagtttgatgaactcttcatcggtgacatacgggtaca 326 | || | ||||| | || |||||| | || |||||||||||||||||||||| | ||| Sbjct: 241 gggtctaacagccaccggtgtgaagatagacgaactcttcatcggtgacatacagacaca 300 Query: 327 acataaaagtggtagaaatactgttgatgtcacaatagattgcgactccaaagtgtcaac 386 |||||||||||| | || ||||||||||||| || ||| | || || | ||||||||| Sbjct: 301 acataaaagtggcaaaaccactgttgatgtcaagattgatagtgaatctagagtgtcaac 360 Query: 387 cgcggtcacttttgatgaagtagtccctggtttgaagacttctttcggcttcaaggttcc 446 | | |||||| ||||||||| | ||||| ||||||||||||| |||||| |||||| Sbjct: 361 cacagtcactgttgatgaagcccttactggtctgaagacttcttttagcttcagggttcc 420 Query: 447 tgatcaaaagtcagggaagctcgatttgcaataccttcatgatcgcttcgcactgaattc 506 |||||||||||| |||||||| |||||||||||||||||||| | || ||||||||||| Sbjct: 421 tgatcaaaagtccgggaagcttgatttgcaataccttcatgaccattttgcactgaattc 480 Query: 507 aaccattgggctgacgtcggcacctgtaatcgagctggcaacaactattggcacaaacga 566 |||||||| |||| || | ||| |||| ||||||||| ||||||| ||||| || || Sbjct: 481 taccattggtttgacatcaacgcctttaattgagctggcagcaactatcggcacgaatga 540 Query: 567 actcgccgtcggtggtgaggttgggtttgacagtacttcagcttctgttaccaagtacaa 626 ||| | |||| ||||||||| || ||||| ||||||||||||||||| |||||||| Sbjct: 541 acttagtgctggtgctgaggttggattcgacagcacttcagcttctgttactaagtacaa 600 Query: 627 ctcaggaatcagctataccaaagatgatttttctgccgccttactattggctgacaaagg 686 |||||| ||| |||||| |||| ||||||||||||| ||| ||||||||||||| ||||| Sbjct: 601 ctcagggatctgctataacaaacatgatttttctgctgccgtactattggctgataaagg 660 Query: 687 ggagac 692 |||||| Sbjct: 661 ggagac 666 Score = 46.1 bits (23), Expect = 0.32 Identities = 44/51 (86%) Strand = Plus / Plus Query: 907 gccgagtacgaccccaaggtggtgagctcgccggcaaggttcggcgtggcc 957 |||||||| || ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 887 gccgagtatgatcccaaagtggtgagttcgccttcaagattcggcgtggcc 937 Score = 42.1 bits (21), Expect = 4.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 862 ctctgccagcacgagtggaggcccaagtc 890 ||||| ||||| ||||||||||||||||| Sbjct: 842 ctctgtcagcatgagtggaggcccaagtc 870
>emb|CT831960.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113M19, full insert sequence Length = 1208 Score = 337 bits (170), Expect = 6e-89 Identities = 452/546 (82%) Strand = Plus / Plus Query: 147 aaggatgagcaaaggcccggttccgttccctatctttgggaagaaagcaagagatatctt 206 |||||||||||||||||| | |||||||| | | ||||||||| ||||| |||| | || Sbjct: 116 aaggatgagcaaaggcccagctccgttcctcaacattgggaagagagcaaaagatctttt 175 Query: 207 gtacaaggactacaattttgaccaaaagttttcatggtcaacaactagcgaatttgggtt 266 ||||||||||||||||||||||||||||||||| | | ||||||||| | | ||| || Sbjct: 176 gtacaaggactacaattttgaccaaaagttttctttaacgacaactagcaattctggttt 235 Query: 267 gagtgtcacagctgctggcgtgaagtttgatgaactcttcatcggtgacatacgggtaca 326 | || | ||||| | || |||||| | || |||||||||||||||||||||| | ||| Sbjct: 236 gggtctaacagccaccggtgtgaagatagacgaactcttcatcggtgacatacagacaca 295 Query: 327 acataaaagtggtagaaatactgttgatgtcacaatagattgcgactccaaagtgtcaac 386 |||||||||||| | || ||||||||||||| || ||| | || || | ||||||||| Sbjct: 296 acataaaagtggcaaaaccactgttgatgtcaagattgatagtgaatctagagtgtcaac 355 Query: 387 cgcggtcacttttgatgaagtagtccctggtttgaagacttctttcggcttcaaggttcc 446 | | |||||| ||||||||| | ||||| ||||||||||||| |||||| |||||| Sbjct: 356 cacagtcactgttgatgaagcccttactggtctgaagacttcttttagcttcagggttcc 415 Query: 447 tgatcaaaagtcagggaagctcgatttgcaataccttcatgatcgcttcgcactgaattc 506 |||||||||||| |||||||| |||||||||||||||||||| | || ||||||||||| Sbjct: 416 tgatcaaaagtccgggaagcttgatttgcaataccttcatgaccattttgcactgaattc 475 Query: 507 aaccattgggctgacgtcggcacctgtaatcgagctggcaacaactattggcacaaacga 566 |||||||| |||| || | ||| |||| ||||||||| ||||||| |||| || || Sbjct: 476 taccattggtttgacatcaacgcctttaattgagctggcagcaactatcggcatgaatga 535 Query: 567 actcgccgtcggtggtgaggttgggtttgacagtacttcagcttctgttaccaagtacaa 626 ||| | |||| ||||||||| || ||||| ||||||||||||||||| |||||||| Sbjct: 536 acttagtgctggtgctgaggttggattcgacagcacttcagcttctgttactaagtacaa 595 Query: 627 ctcaggaatcagctataccaaagatgatttttctgccgccttactattggctgacaaagg 686 |||||| ||| |||||| |||| ||||||||||||| ||| ||||||||||||| ||||| Sbjct: 596 ctcagggatctgctataacaaacatgatttttctgctgccgtactattggctgataaagg 655 Query: 687 ggagac 692 |||||| Sbjct: 656 ggagac 661 Score = 67.9 bits (34), Expect = 9e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 736 gtggcggccgaggtaatgcacaggttgaaaacaaaggagaactacttcaccattgggagc 795 |||||||| || |||| ||||| |||||||||||| |||||||| |||||||| |||||| Sbjct: 711 gtggcggctgaagtaacgcacaagttgaaaacaaaagagaactatttcaccatcgggagc 770 Query: 796 tc 797 || Sbjct: 771 tc 772 Score = 46.1 bits (23), Expect = 0.32 Identities = 44/51 (86%) Strand = Plus / Plus Query: 907 gccgagtacgaccccaaggtggtgagctcgccggcaaggttcggcgtggcc 957 |||||||| || ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 882 gccgagtatgatcccaaagtggtgagttcgccttcaagattcggcgtggcc 932 Score = 42.1 bits (21), Expect = 4.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 862 ctctgccagcacgagtggaggcccaagtc 890 ||||| ||||| ||||||||||||||||| Sbjct: 837 ctctgtcagcatgagtggaggcccaagtc 865
>gb|AY105773.1| Zea mays PCO130847 mRNA sequence Length = 1460 Score = 196 bits (99), Expect = 1e-46 Identities = 393/491 (80%) Strand = Plus / Plus Query: 142 ttgggaaggatgagcaaaggcccggttccgttccctatctttgggaagaaagcaagagat 201 ||||||||||||||||||||||| ||||| ||| | | | ||||||||| ||||| |||| Sbjct: 180 ttgggaaggatgagcaaaggccctgttccattcgccaacattgggaagagagcaaaagat 239 Query: 202 atcttgtacaaggactacaattttgaccaaaagttttcatggtcaacaactagcgaattt 261 ||||||||||||||||||| ||||||||||||||||| | ||| ||| | | | | Sbjct: 240 ctcttgtacaaggactacaactttgaccaaaagttttctttgtcgacatgttctaactct 299 Query: 262 gggttgagtgtcacagctgctggcgtgaagtttgatgaactcttcatcggtgacatacgg 321 || |||| | ||||||| |||| |||||| | ||||| |||||| ||||| |||||| Sbjct: 300 ggtttgaatctcacagccactggtgtgaagatcaatgaagacttcattggtgatatacgg 359 Query: 322 gtacaacataaaagtggtagaaatactgttgatgtcacaatagattgcgactccaaagtg 381 ||| |||||||| || |||| ||||||||||||| ||| ||| | || || |||||| Sbjct: 360 acacagcataaaagcggcagaaccactgttgatgtcataatcgatagtgattctaaagtg 419 Query: 382 tcaaccgcggtcacttttgatgaagtagtccctggtttgaagacttctttcggcttcaag 441 |||||| | |||||| ||||||||| | | |||||||||||||||| || | ||||||| Sbjct: 420 tcaaccacagtcactgttgatgaagcactaactggtttgaagacttcatttgccttcaag 479 Query: 442 gttcctgatcaaaagtcagggaagctcgatttgcaataccttcatgatcgcttcgcactg 501 ||||| ||||| ||||| |||||||| ||| ||||||| || |||| || || || Sbjct: 480 gttccagatcacaagtctgggaagcttgatctgcaatatgcccacaatcgtttttcaatg 539 Query: 502 aattcaaccattgggctgacgtcggcacctgtaatcgagctggcaacaactattggcaca 561 ||||| |||||||| |||| || ||||| | | ||||| || ||||| | |||||| Sbjct: 540 aattcgaccattggtttgacatcaacacctttggttgagctcgctgcaactgtcggcaca 599 Query: 562 aacgaactcgccgtcggtggtgaggttgggtttgacagtacttcagcttctgttaccaag 621 | ||||| ||| | |||| |||| | |||||||| |||||||||||| |||||||||| Sbjct: 600 agtgaacttgccattggtgctgagttcgggtttgatagtacttcagctgctgttaccaaa 659 Query: 622 tacaactcagg 632 ||||||||||| Sbjct: 660 tacaactcagg 670 Score = 65.9 bits (33), Expect = 3e-07 Identities = 156/197 (79%) Strand = Plus / Plus Query: 761 tgaaaacaaaggagaactacttcaccattgggagctcccacgcgctcgacccgtccacga 820 ||||||| ||||||||||| ||||| ||||||||||||| || || || || || || Sbjct: 805 tgaaaaccaaggagaactatttcacacttgggagctcccatgcccttgatccttcaacat 864 Query: 821 cggtgaagacgaggttcagcaacagcgggaaggccgggctgctctgccagcacgagtgga 880 | | |||||||| ||||||||| ||||||| ||| || ||||| ||||| ||||||| Sbjct: 865 tgctaaagacgagattcagcaactcggggaaggtcggtcttctctgtcagcatgagtgga 924 Query: 881 ggcccaagtcgtacgtgacgctgtcggccgagtacgaccccaaggtggtgagctcgccgg 940 |||| ||||| |||||| || || || ||||| || || |||||||| || |||| Sbjct: 925 ggccaaagtccctcgtgactctttcagctgagtatgatccaaaggtggtaagtgcgcctt 984 Query: 941 caaggttcggcgtggcc 957 ||||| ||||||||||| Sbjct: 985 caaggatcggcgtggcc 1001
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 143 bits (72), Expect = 2e-30 Identities = 177/212 (83%) Strand = Plus / Plus Query: 464 agctcgatttgcaataccttcatgatcgcttcgcactgaattcaaccattgggctgacgt 523 |||| |||||||||||||||||||| | || ||||||||||| |||||||| |||| | Sbjct: 90885 agcttgatttgcaataccttcatgaccattttgcactgaattctaccattggtttgacat 90944 Query: 524 cggcacctgtaatcgagctggcaacaactattggcacaaacgaactcgccgtcggtggtg 583 | | ||| |||| ||||||||| ||||||| ||||| || ||||| | |||| || Sbjct: 90945 caacgcctttaattgagctggcagcaactatcggcacgaatgaacttagtgctggtgctg 91004 Query: 584 aggttgggtttgacagtacttcagcttctgttaccaagtacaactcaggaatcagctata 643 ||||||| || ||||| ||||||||||||||||| |||||||||||||| ||| |||||| Sbjct: 91005 aggttggattcgacagcacttcagcttctgttactaagtacaactcagggatctgctata 91064 Query: 644 ccaaagatgatttttctgccgccttactattg 675 |||| ||||||||||||| ||| |||||||| Sbjct: 91065 acaaacatgatttttctgctgccgtactattg 91096 Score = 69.9 bits (35), Expect = 2e-08 Identities = 35/35 (100%) Strand = Plus / Plus Query: 205 ttgtacaaggactacaattttgaccaaaagttttc 239 ||||||||||||||||||||||||||||||||||| Sbjct: 89801 ttgtacaaggactacaattttgaccaaaagttttc 89835 Score = 69.9 bits (35), Expect = 2e-08 Identities = 74/87 (85%) Strand = Plus / Plus Query: 379 gtgtcaaccgcggtcacttttgatgaagtagtccctggtttgaagacttctttcggcttc 438 ||||||||| | |||||| ||||||||| | ||||| ||||||||||||| ||||| Sbjct: 90575 gtgtcaaccacagtcactgttgatgaagcccttactggtctgaagacttcttttagcttc 90634 Query: 439 aaggttcctgatcaaaagtcagggaag 465 | |||||||||||||||||| |||||| Sbjct: 90635 agggttcctgatcaaaagtccgggaag 90661 Score = 65.9 bits (33), Expect = 3e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 298 gaactcttcatcggtgacatacgggtacaacataaaagtggtagaaatactgttgatgtc 357 |||||||||||||||||||||| | ||||||||||||||| | || |||||||||||| Sbjct: 89983 gaactcttcatcggtgacatacagacacaacataaaagtggcaaaaccactgttgatgtc 90042 Query: 358 a 358 | Sbjct: 90043 a 90043 Score = 46.1 bits (23), Expect = 0.32 Identities = 44/51 (86%) Strand = Plus / Plus Query: 907 gccgagtacgaccccaaggtggtgagctcgccggcaaggttcggcgtggcc 957 |||||||| || ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 91764 gccgagtatgatcccaaagtggtgagttcgccttcaagattcggcgtggcc 91814 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 147 aaggatgagcaaaggcccggttccgttccctatctttgggaagaaagcaa 196 |||||||||||||||||| | |||||||| | | ||||||||| ||||| Sbjct: 89088 aaggatgagcaaaggcccagctccgttcctcaacattgggaagagagcaa 89137 Score = 42.1 bits (21), Expect = 4.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 862 ctctgccagcacgagtggaggcccaagtc 890 ||||| ||||| ||||||||||||||||| Sbjct: 91719 ctctgtcagcatgagtggaggcccaagtc 91747
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 143 bits (72), Expect = 2e-30 Identities = 177/212 (83%) Strand = Plus / Plus Query: 464 agctcgatttgcaataccttcatgatcgcttcgcactgaattcaaccattgggctgacgt 523 |||| |||||||||||||||||||| | || ||||||||||| |||||||| |||| | Sbjct: 2053474 agcttgatttgcaataccttcatgaccattttgcactgaattctaccattggtttgacat 2053533 Query: 524 cggcacctgtaatcgagctggcaacaactattggcacaaacgaactcgccgtcggtggtg 583 | | ||| |||| ||||||||| ||||||| ||||| || ||||| | |||| || Sbjct: 2053534 caacgcctttaattgagctggcagcaactatcggcacgaatgaacttagtgctggtgctg 2053593 Query: 584 aggttgggtttgacagtacttcagcttctgttaccaagtacaactcaggaatcagctata 643 ||||||| || ||||| ||||||||||||||||| |||||||||||||| ||| |||||| Sbjct: 2053594 aggttggattcgacagcacttcagcttctgttactaagtacaactcagggatctgctata 2053653 Query: 644 ccaaagatgatttttctgccgccttactattg 675 |||| ||||||||||||| ||| |||||||| Sbjct: 2053654 acaaacatgatttttctgctgccgtactattg 2053685 Score = 69.9 bits (35), Expect = 2e-08 Identities = 35/35 (100%) Strand = Plus / Plus Query: 205 ttgtacaaggactacaattttgaccaaaagttttc 239 ||||||||||||||||||||||||||||||||||| Sbjct: 2052390 ttgtacaaggactacaattttgaccaaaagttttc 2052424 Score = 69.9 bits (35), Expect = 2e-08 Identities = 74/87 (85%) Strand = Plus / Plus Query: 379 gtgtcaaccgcggtcacttttgatgaagtagtccctggtttgaagacttctttcggcttc 438 ||||||||| | |||||| ||||||||| | ||||| ||||||||||||| ||||| Sbjct: 2053164 gtgtcaaccacagtcactgttgatgaagcccttactggtctgaagacttcttttagcttc 2053223 Query: 439 aaggttcctgatcaaaagtcagggaag 465 | |||||||||||||||||| |||||| Sbjct: 2053224 agggttcctgatcaaaagtccgggaag 2053250 Score = 65.9 bits (33), Expect = 3e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 298 gaactcttcatcggtgacatacgggtacaacataaaagtggtagaaatactgttgatgtc 357 |||||||||||||||||||||| | ||||||||||||||| | || |||||||||||| Sbjct: 2052572 gaactcttcatcggtgacatacagacacaacataaaagtggcaaaaccactgttgatgtc 2052631 Query: 358 a 358 | Sbjct: 2052632 a 2052632 Score = 46.1 bits (23), Expect = 0.32 Identities = 44/51 (86%) Strand = Plus / Plus Query: 907 gccgagtacgaccccaaggtggtgagctcgccggcaaggttcggcgtggcc 957 |||||||| || ||||| |||||||| ||||| |||| |||||||||||| Sbjct: 2054353 gccgagtatgatcccaaagtggtgagttcgccttcaagattcggcgtggcc 2054403 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 147 aaggatgagcaaaggcccggttccgttccctatctttgggaagaaagcaa 196 |||||||||||||||||| | |||||||| | | ||||||||| ||||| Sbjct: 2051677 aaggatgagcaaaggcccagctccgttcctcaacattgggaagagagcaa 2051726 Score = 42.1 bits (21), Expect = 4.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 862 ctctgccagcacgagtggaggcccaagtc 890 ||||| ||||| ||||||||||||||||| Sbjct: 2054308 ctctgtcagcatgagtggaggcccaagtc 2054336
>gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b06, complete sequence Length = 112592 Score = 85.7 bits (43), Expect = 4e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 538 gagctggcaacaactattggcacaaacgaactcgccgtcggtggtgaggttgggtttgac 597 |||||||| ||||| ||||||||| ||||| || | |||| |||||| ||||||||| Sbjct: 35968 gagctggctgcaactgttggcacaagtgaacttaccattggtgctgaggtcgggtttgac 35909 Query: 598 agtacttcagcttctgttaccaagtacaactcagg 632 |||||||||||| ||||||| |||||||||||||| Sbjct: 35908 agtacttcagctgctgttactaagtacaactcagg 35874 Score = 65.9 bits (33), Expect = 3e-07 Identities = 126/157 (80%) Strand = Plus / Minus Query: 734 cggtggcggccgaggtaatgcacaggttgaaaacaaaggagaactacttcaccattggga 793 ||||||| || ||||||| |||| ||| ||||| ||||||||||| ||||| |||||| Sbjct: 35549 cggtggcagctgaggtaacacacaagttcaaaaccaaggagaactatttcacagttggga 35490 Query: 794 gctcccacgcgctcgacccgtccacgacggtgaagacgaggttcagcaacagcgggaagg 853 ||||||| || || || || || || | | |||||| | ||||||||| |||||||| Sbjct: 35489 gctcccatgcccttgatccttcaacattgctaaagacgcgattcagcaactccgggaagg 35430 Query: 854 ccgggctgctctgccagcacgagtggaggcccaagtc 890 ||| || ||||| ||||| ||||||||||| ||||| Sbjct: 35429 tcggtcttctctgtcagcatgagtggaggccaaagtc 35393 Score = 63.9 bits (32), Expect = 1e-06 Identities = 68/80 (85%) Strand = Plus / Minus Query: 379 gtgtcaaccgcggtcacttttgatgaagtagtccctggtttgaagacttctttcggcttc 438 ||||||||| | |||||| ||||||||| | | ||||||||||||| || |||| |||| Sbjct: 36333 gtgtcaaccacagtcactgttgatgaagcactaactggtttgaagacctcattcgccttc 36274 Query: 439 aaggttcctgatcaaaagtc 458 |||||||| ||||| ||||| Sbjct: 36273 aaggttccagatcacaagtc 36254 Score = 56.0 bits (28), Expect = 3e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 303 cttcatcggtgacatacgggtacaacataaaagtggtagaaatactgttgatgtca 358 |||||| |||| |||||| ||| |||||||||||||||| |||||||||||||| Sbjct: 36907 cttcattggtgttatacggacacagcataaaagtggtagaactactgttgatgtca 36852 Score = 52.0 bits (26), Expect = 0.005 Identities = 32/34 (94%) Strand = Plus / Minus Query: 206 tgtacaaggactacaattttgaccaaaagttttc 239 |||||||||||||||| |||||||| |||||||| Sbjct: 37089 tgtacaaggactacaactttgaccagaagttttc 37056 Score = 50.1 bits (25), Expect = 0.020 Identities = 28/29 (96%) Strand = Plus / Minus Query: 142 ttgggaaggatgagcaaaggcccggttcc 170 ||||||||||||||||||||||| ||||| Sbjct: 37620 ttgggaaggatgagcaaaggcccagttcc 37592
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 46.1 bits (23), Expect = 0.32 Identities = 26/27 (96%) Strand = Plus / Minus Query: 931 agctcgccggcaaggttcggcgtggcc 957 ||||||||| ||||||||||||||||| Sbjct: 1681994 agctcgccgacaaggttcggcgtggcc 1681968
>emb|AL357519.19| Human DNA sequence from clone RP11-367G18 on chromosome 6 Contains a putative novel gene and a ubiquitin/ ribosomal protein S27A (RPS27A) fusion protein pseudogene, complete sequence Length = 157021 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 186 gaagaaagcaagagatatcttg 207 |||||||||||||||||||||| Sbjct: 24753 gaagaaagcaagagatatcttg 24732
>dbj|AK107864.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-B12, full insert sequence Length = 450 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 147 aaggatgagcaaaggcccggttccgttccctatctttgggaagaaagcaa 196 |||||||||||||||||| | |||||||| | | ||||||||| ||||| Sbjct: 144 aaggatgagcaaaggcccagctccgttcctcaacattgggaagagagcaa 193
>gb|CP000454.1| Arthrobacter sp. FB24, complete genome Length = 4698945 Score = 42.1 bits (21), Expect = 4.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 854 ccgggctgctctgccagcacg 874 ||||||||||||||||||||| Sbjct: 3671297 ccgggctgctctgccagcacg 3671277
>gb|BT016888.1| Zea mays clone Contig721 mRNA sequence Length = 1209 Score = 42.1 bits (21), Expect = 4.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 867 ccagcacgagtggaggcccaagtcg 891 |||||||||||||||||| |||||| Sbjct: 378 ccagcacgagtggaggccaaagtcg 354
>gb|AY316741.1| Lotus corniculatus var. japonicus VDAC3.1 mRNA, complete cds Length = 1210 Score = 42.1 bits (21), Expect = 4.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 193 gcaagagatatcttgtacaaggactacaattttgaccaaaagttt 237 |||||||| ||||||||||||| || || ||||| ||||||||| Sbjct: 182 gcaagagacctcttgtacaaggattataactttgatcaaaagttt 226
>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor agent ansamitocin biosynthetic gene cluster I, partial sequence Length = 82746 Score = 42.1 bits (21), Expect = 4.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 720 cagcccgaccagcgcggtggc 740 ||||||||||||||||||||| Sbjct: 2085 cagcccgaccagcgcggtggc 2065
>emb|CR339042.13| Zebrafish DNA sequence from clone CH211-268L18 in linkage group 21, complete sequence Length = 176058 Score = 42.1 bits (21), Expect = 4.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1222 tttgtattttaggcatacgct 1242 ||||||||||||||||||||| Sbjct: 48233 tttgtattttaggcatacgct 48253
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 4.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 gaagtttgatgaactcttcatcggt 312 |||| |||||||||||||||||||| Sbjct: 2926602 gaagcttgatgaactcttcatcggt 2926578
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 4.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 921 caaggtggtgagctcgccggc 941 ||||||||||||||||||||| Sbjct: 26279067 caaggtggtgagctcgccggc 26279047
>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455H11 Length = 101607 Score = 42.1 bits (21), Expect = 4.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 921 caaggtggtgagctcgccggc 941 ||||||||||||||||||||| Sbjct: 53695 caaggtggtgagctcgccggc 53675
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 4.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 acgaactcgccgtcggtggtg 583 ||||||||||||||||||||| Sbjct: 3571029 acgaactcgccgtcggtggtg 3571049
>gb|AF178950.1|AF178950 Zea mays voltage-dependent anion channel protein 1a (vdac1a) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1179 Score = 42.1 bits (21), Expect = 4.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 867 ccagcacgagtggaggcccaagtcg 891 |||||||||||||||||| |||||| Sbjct: 815 ccagcacgagtggaggccaaagtcg 839
>gb|AY104870.1| Zea mays PCO081914 mRNA sequence Length = 1445 Score = 42.1 bits (21), Expect = 4.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 867 ccagcacgagtggaggcccaagtcg 891 |||||||||||||||||| |||||| Sbjct: 926 ccagcacgagtggaggccaaagtcg 950
>emb|AL845282.12| Zebrafish DNA sequence from clone DKEY-28P18 in linkage group 21, complete sequence Length = 192865 Score = 42.1 bits (21), Expect = 4.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1222 tttgtattttaggcatacgct 1242 ||||||||||||||||||||| Sbjct: 189194 tttgtattttaggcatacgct 189214 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 190,133,088 Number of extensions: 11050056 Number of successful extensions: 207359 Number of sequences better than 10.0: 24 Number of HSP's gapped: 207354 Number of HSP's successfully gapped: 69 Length of query: 1296 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1273 Effective length of database: 18,503,978,556 Effective search space: 23555564701788 Effective search space used: 23555564701788 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
