Clone Information

BLAST Search Result

Clone Name	FLbaf4f08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK243319.1\| Oryza sativa (japonica cultivar-group) cDNA, clo...	412	e-112
2	ref\|NM_001053210.1\| Oryza sativa (japonica cultivar-group) Os02g...	412	e-112
3	emb\|CT835486.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	404	e-109
4	gb\|AY104587.1\| Zea mays PCO104634 mRNA sequence	311	2e-81
5	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	250	6e-63
6	dbj\|AP004024.3\| Oryza sativa (japonica cultivar-group) genomic D...	250	6e-63
7	dbj\|AP004798.2\| Oryza sativa (japonica cultivar-group) genomic D...	250	6e-63
8	ref\|NM_124867.2\| Arabidopsis thaliana unknown protein (AT5G54855...	117	6e-23
9	gb\|AY093718.1\| Arabidopsis thaliana AT1g27100/T7N9_16 mRNA, comp...	117	6e-23
10	gb\|AF410270.1\|AF410270 Arabidopsis thaliana unknown protein mRNA...	117	6e-23
11	dbj\|AK118946.1\| Arabidopsis thaliana At5g54855 mRNA for unknown ...	117	6e-23
12	dbj\|AB005232.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	113	1e-21
13	gb\|AY088675.1\| Arabidopsis thaliana clone 9159 mRNA, complete se...	109	1e-20
14	emb\|BX830033.1\|CNS0A053 Arabidopsis thaliana Full-length cDNA Co...	84	9e-13
15	emb\|AL929244.8\| Mouse DNA sequence from clone RP23-456L5 on chro...	44	0.73
16	emb\|CR855179.1\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	42	2.9
17	emb\|CR855170.1\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	42	2.9
18	gb\|AC166798.3\| Mus musculus chromosome 3, clone RP23-442J19, com...	42	2.9
19	gb\|AC164423.2\| Mus musculus chromosome 3, clone RP24-361M10, com...	42	2.9
20	gb\|AC125113.3\| Mus musculus BAC clone RP24-251K23 from chromosom...	42	2.9
21	gb\|AC105166.16\| Mus musculus chromosome 5, clone RP24-311D15, co...	42	2.9
22	gb\|AY364845.1\| Virus PhiCh1 pBgB51 capsid protein, int1, and cap...	42	2.9
23	gb\|AY364843.1\| Virus PhiCh1 pBgB5 ORF34-5, integrase, and ORF36-...	42	2.9
24	gb\|AC121296.7\| Mus musculus chromosome 14, clone RP23-286K8, com...	42	2.9
25	gb\|AC157766.4\| Mus musculus chromosome 1, clone RP24-318F24, com...	42	2.9
26	gb\|AC099506.3\| Homo sapiens chromosome 16 clone RP11-22H5, compl...	42	2.9
27	gb\|AF440695.1\| Virus PhiCh1, complete genome	42	2.9
28	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.9
29	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.9
30	gb\|AC134230.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.9
31	dbj\|AP006643.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	42	2.9
32	emb\|AL845349.13\| Mouse DNA sequence from clone RP23-311F6 on chr...	42	2.9
33	gb\|AC151055.3\| Mus musculus BAC clone RP23-24A9 from 6, complete...	42	2.9
34	gb\|AC103663.15\| Mus musculus chromosome 1, clone RP23-219O12, co...	42	2.9
35	gb\|AC108791.9\| Mus musculus chromosome 1, clone RP24-292D18, com...	42	2.9
36	emb\|AL606448.3\|OSJN00013 Oryza sativa genomic DNA, chromosome 4,...	42	2.9
37	emb\|AL844891.7\| Mouse DNA sequence from clone RP23-350N21 on chr...	42	2.9
38	emb\|AL772398.7\| Mouse DNA sequence from clone RP23-173J23 on chr...	42	2.9

>dbj|AK243319.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100056L07,
           full insert sequence
          Length = 715
 Score =  412 bits (208), Expect = e-112
 Identities = 340/384 (88%)
 Strand = Plus / Plus

                                                                       
Query: 132 ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 191
           ||||| || |||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 113 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 172

                                                                       
Query: 192 cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 251
           | |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 173 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 232

                                                                       
Query: 252 ggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcg 311
           || || |||||||| || || |||||||||| ||||||||| || |||||||||||||| 
Sbjct: 233 ggtgccgaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggcc 292

                                                                       
Query: 312 ttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgg 371
           |||||||||| ||||||||||||||  ||||| ||||| ||||| ||||| ||||| |||
Sbjct: 293 ttcacaaactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgg 352

                                                                       
Query: 372 gattcgtgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgat 431
           || || ||| |||| ||||||||||||||||| |||||||||||||| | |||||| |||
Sbjct: 353 gagtcatgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgat 412

                                                                       
Query: 432 gcacactctggggtcaagttcacatacaacaaacagtcggggagctcgcacaacgtcaag 491
            ||||||||||||||||||||||||||| ||| |  || || | ||| |||| |||||||
Sbjct: 413 acacactctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaag 472

                                   
Query: 492 acgttcctctacaagcctgccaac 515
           ||||||||||||||||||||||||
Sbjct: 473 acgttcctctacaagcctgccaac 496

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>ref|NM_001053210.1| Oryza sativa (japonica cultivar-group) Os02g0317800 (Os02g0317800)
           mRNA, complete cds
          Length = 468

 Score =  412 bits (208), Expect = e-112
 Identities = 340/384 (88%)
 Strand = Plus / Plus

                                                                       
Query: 132 ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 191
           ||||| || |||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 64  ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 123

                                                                       
Query: 192 cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 251
           | |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 124 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 183

                                                                       
Query: 252 ggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcg 311
           || || |||||||| || || |||||||||| ||||||||| || |||||||||||||| 
Sbjct: 184 ggtgccgaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggcc 243

                                                                       
Query: 312 ttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgg 371
           |||||||||| ||||||||||||||  ||||| ||||| ||||| ||||| ||||| |||
Sbjct: 244 ttcacaaactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgg 303

                                                                       
Query: 372 gattcgtgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgat 431
           || || ||| |||| ||||||||||||||||| |||||||||||||| | |||||| |||
Sbjct: 304 gagtcatgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgat 363

                                                                       
Query: 432 gcacactctggggtcaagttcacatacaacaaacagtcggggagctcgcacaacgtcaag 491
            ||||||||||||||||||||||||||| ||| |  || || | ||| |||| |||||||
Sbjct: 364 acacactctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaag 423

                                   
Query: 492 acgttcctctacaagcctgccaac 515
           ||||||||||||||||||||||||
Sbjct: 424 acgttcctctacaagcctgccaac 447

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>emb|CT835486.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054M03, full
           insert sequence
          Length = 547

 Score =  404 bits (204), Expect = e-109
 Identities = 339/384 (88%)
 Strand = Plus / Plus

                                                                       
Query: 132 ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 191
           ||||| || |||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 123 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 182

                                                                       
Query: 192 cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 251
           | |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 183 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 242

                                                                       
Query: 252 ggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcg 311
           || || |||||||| || || |||||||||| ||||||||| || |||||||||||||| 
Sbjct: 243 ggtgccgaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggcc 302

                                                                       
Query: 312 ttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgg 371
           |||||||||| ||||||||||||||  ||||  ||||| ||||| ||||| ||||| |||
Sbjct: 303 ttcacaaactccaagggtgtctacattgttggggagacgatgccagagagtgaccgttgg 362

                                                                       
Query: 372 gattcgtgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgat 431
           || || ||| |||| ||||||||||||||||| |||||||||||||| | |||||| |||
Sbjct: 363 gagtcatgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgat 422

                                                                       
Query: 432 gcacactctggggtcaagttcacatacaacaaacagtcggggagctcgcacaacgtcaag 491
            ||||||||||||||||||||||||||| ||| |  || || | ||| |||| |||||||
Sbjct: 423 acacactctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaag 482

                                   
Query: 492 acgttcctctacaagcctgccaac 515
           ||||||||||||||||||||||||
Sbjct: 483 acgttcctctacaagcctgccaac 506

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>gb|AY104587.1| Zea mays PCO104634 mRNA sequence
          Length = 903

 Score =  311 bits (157), Expect = 2e-81
 Identities = 307/357 (85%)
 Strand = Plus / Plus

                                                                       
Query: 157 cggcggccgaggcttggacgggggagatccgcggccgcgtcgtctgcgacgtctgcgcgg 216
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 243 cggcggccgaggcttggacgggggagatccgcggccgcgtcgtctgcgacgtctgcggcg 302

                                                                       
Query: 217 actctgccatcggccccgaggaccacgtcctcgaaggcgctgaggttgctgttctgtgca 276
           || | ||||||||||| |||||||||| ||||||||| || ||||||||||| || ||||
Sbjct: 303 acgcagccatcggcccggaggaccacgccctcgaaggtgcggaggttgctgtcctctgca 362

                                                                       
Query: 277 tcacgaaatctggtgaggtcatcaactaccaggcgttcacaaactacaagggtgtctaca 336
           |||| |||||||||||||| |||||||| || || |||||||||| |||||| || || |
Sbjct: 363 tcacaaaatctggtgaggttatcaactatcaagccttcacaaactccaagggcgtgtata 422

                                                                       
Query: 337 gcgttgcagagacaatgcctgagagcgaccgatgggattcgtgcctggcgaggcccatca 396
             || || ||||| ||||| ||||||||| | ||||| |||||| |||||||||| || |
Sbjct: 423 ctgtcgccgagactatgccggagagcgacaggtgggactcgtgcttggcgaggcctatga 482

                                                                       
Query: 397 gcagcttccaccagcattgcaccaggaggggcgatgcacactctggggtcaagttcacat 456
           |||||||||| |  ||||||||  || |||| ||||| ||||||||||| |||||||| |
Sbjct: 483 gcagcttccatctacattgcacacggcggggtgatgctcactctggggtgaagttcactt 542

                                                                    
Query: 457 acaacaaacagtcggggagctcgcacaacgtcaagacgttcctctacaagcctgcca 513
           ||||||||  ||| |||| | |||||| ||||||| | |||||||||||||| ||||
Sbjct: 543 acaacaaatcgtctgggaacccgcacaccgtcaagcctttcctctacaagccggcca 599

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score =  250 bits (126), Expect = 6e-63
 Identities = 225/258 (87%)
 Strand = Plus / Minus

                                                                            
Query: 258      gaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttcaca 317
                |||||||| || || |||||||||| ||||||||| || |||||||||||||| ||||||
Sbjct: 12629680 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 12629621

                                                                            
Query: 318      aactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggattcg 377
                |||| ||||||||||||||  ||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 12629620 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 12629561

                                                                            
Query: 378      tgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgatgcacac 437
                ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| |||||
Sbjct: 12629560 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 12629501

                                                                            
Query: 438      tctggggtcaagttcacatacaacaaacagtcggggagctcgcacaacgtcaagacgttc 497
                |||||||||||||||||||||| ||| |  || || | ||| |||| |||||||||||||
Sbjct: 12629500 tctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaagacgttc 12629441

                                  
Query: 498      ctctacaagcctgccaac 515
                ||||||||||||||||||
Sbjct: 12629440 ctctacaagcctgccaac 12629423



 Score =  170 bits (86), Expect = 5e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                            
Query: 132      ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 191
                ||||| || |||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12632467 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 12632408

                                                                            
Query: 192      cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 251
                | |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 12632407 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 12632348

                  
Query: 252      gg 253
                ||
Sbjct: 12632347 gg 12632346

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>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_B09
          Length = 105247

 Score =  250 bits (126), Expect = 6e-63
 Identities = 225/258 (87%)
 Strand = Plus / Minus

                                                                         
Query: 258   gaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttcaca 317
             |||||||| || || |||||||||| ||||||||| || |||||||||||||| ||||||
Sbjct: 26739 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 26680

                                                                         
Query: 318   aactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggattcg 377
             |||| ||||||||||||||  ||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 26679 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 26620

                                                                         
Query: 378   tgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgatgcacac 437
             ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| |||||
Sbjct: 26619 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 26560

                                                                         
Query: 438   tctggggtcaagttcacatacaacaaacagtcggggagctcgcacaacgtcaagacgttc 497
             |||||||||||||||||||||| ||| |  || || | ||| |||| |||||||||||||
Sbjct: 26559 tctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaagacgttc 26500

                               
Query: 498   ctctacaagcctgccaac 515
             ||||||||||||||||||
Sbjct: 26499 ctctacaagcctgccaac 26482



 Score =  170 bits (86), Expect = 5e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                         
Query: 132   ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 191
             ||||| || |||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 29526 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 29467

                                                                         
Query: 192   cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 251
             | |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 29466 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 29407

               
Query: 252   gg 253
             ||
Sbjct: 29406 gg 29405

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>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0572D06
          Length = 148920

 Score =  250 bits (126), Expect = 6e-63
 Identities = 225/258 (87%)
 Strand = Plus / Minus

                                                                          
Query: 258    gaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttcaca 317
              |||||||| || || |||||||||| ||||||||| || |||||||||||||| ||||||
Sbjct: 134213 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 134154

                                                                          
Query: 318    aactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggattcg 377
              |||| ||||||||||||||  ||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 134153 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 134094

                                                                          
Query: 378    tgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgatgcacac 437
              ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| |||||
Sbjct: 134093 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 134034

                                                                          
Query: 438    tctggggtcaagttcacatacaacaaacagtcggggagctcgcacaacgtcaagacgttc 497
              |||||||||||||||||||||| ||| |  || || | ||| |||| |||||||||||||
Sbjct: 134033 tctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaagacgttc 133974

                                
Query: 498    ctctacaagcctgccaac 515
              ||||||||||||||||||
Sbjct: 133973 ctctacaagcctgccaac 133956



 Score =  170 bits (86), Expect = 5e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                          
Query: 132    ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 191
              ||||| || |||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 137000 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 136941

                                                                          
Query: 192    cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 251
              | |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 136940 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 136881

                
Query: 252    gg 253
              ||
Sbjct: 136880 gg 136879

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>ref|NM_124867.2| Arabidopsis thaliana unknown protein (AT5G54855) mRNA, complete cds
          Length = 679

 Score =  117 bits (59), Expect = 6e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                       
Query: 249 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 308
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 259 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 318

                                                                       
Query: 309 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 368
           || ||||||||||  || ||||||||||  ||||||||||||||||| |||||||| || 
Sbjct: 319 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 378

                                                  
Query: 369 tgggattcgtgcctggcgaggcccatcagcagcttccac 407
           |||||  | ||||| || || ||||||||||||||||||
Sbjct: 379 tgggacgcttgccttgcaagacccatcagcagcttccac 417

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>gb|AY093718.1| Arabidopsis thaliana AT1g27100/T7N9_16 mRNA, complete cds
          Length = 441

 Score =  117 bits (59), Expect = 6e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                       
Query: 249 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 308
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 157 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 216

                                                                       
Query: 309 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 368
           || ||||||||||  || ||||||||||  ||||||||||||||||| |||||||| || 
Sbjct: 217 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 276

                                                  
Query: 369 tgggattcgtgcctggcgaggcccatcagcagcttccac 407
           |||||  | ||||| || || ||||||||||||||||||
Sbjct: 277 tgggacgcttgccttgcaagacccatcagcagcttccac 315

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>gb|AF410270.1|AF410270 Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 636

 Score =  117 bits (59), Expect = 6e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                       
Query: 249 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 308
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 216 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 275

                                                                       
Query: 309 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 368
           || ||||||||||  || ||||||||||  ||||||||||||||||| |||||||| || 
Sbjct: 276 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 335

                                                  
Query: 369 tgggattcgtgcctggcgaggcccatcagcagcttccac 407
           |||||  | ||||| || || ||||||||||||||||||
Sbjct: 336 tgggacgcttgccttgcaagacccatcagcagcttccac 374

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>dbj|AK118946.1| Arabidopsis thaliana At5g54855 mRNA for unknown protein, complete
           cds, clone: RAFL21-28-L11
          Length = 635

 Score =  117 bits (59), Expect = 6e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                       
Query: 249 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 308
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 229 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 288

                                                                       
Query: 309 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 368
           || ||||||||||  || ||||||||||  ||||||||||||||||| |||||||| || 
Sbjct: 289 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 348

                                                  
Query: 369 tgggattcgtgcctggcgaggcccatcagcagcttccac 407
           |||||  | ||||| || || ||||||||||||||||||
Sbjct: 349 tgggacgcttgccttgcaagacccatcagcagcttccac 387

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>dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8
          Length = 80315

 Score =  113 bits (57), Expect = 1e-21
 Identities = 129/153 (84%)
 Strand = Plus / Plus

                                                                         
Query: 255   gctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttc 314
             ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| || |||
Sbjct: 42976 gctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaagctttc 43035

                                                                         
Query: 315   acaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggat 374
             |||||||  || ||||||||||  ||||||||||||||||| |||||||| || ||||| 
Sbjct: 43036 acaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgttgggac 43095

                                              
Query: 375   tcgtgcctggcgaggcccatcagcagcttccac 407
              | ||||| || || ||||||||||||||||||
Sbjct: 43096 gcttgccttgcaagacccatcagcagcttccac 43128

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>gb|AY088675.1| Arabidopsis thaliana clone 9159 mRNA, complete sequence
          Length = 661

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                       
Query: 249 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 308
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 259 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 318

                                                                       
Query: 309 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 368
           || ||||| ||||  || ||||||||||  ||||||||||||||||| |||||||| || 
Sbjct: 319 gctttcactaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 378

                                                  
Query: 369 tgggattcgtgcctggcgaggcccatcagcagcttccac 407
           |||||  | ||||| || || ||||||||||||||||||
Sbjct: 379 tgggacgcttgccttgcaagacccatcagcagcttccac 417

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>emb|BX830033.1|CNS0A053 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB54ZF04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1507

 Score = 83.8 bits (42), Expect = 9e-13
 Identities = 123/150 (82%)
 Strand = Plus / Plus

                                                                        
Query: 255  gctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttc 314
            ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| || || 
Sbjct: 1134 gctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaagctttt 1193

                                                                        
Query: 315  acaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggat 374
            |||||||  || |||||||| |  ||||||||||||||||| |||||||| || ||||| 
Sbjct: 1194 acaaactcaaaaggtgtctaaacagttgcagagacaatgccagagagcgaacgttgggac 1253

                                          
Query: 375  tcgtgcctggcgaggcccatcagcagcttc 404
             | | ||| || || |||||||||||||||
Sbjct: 1254 gcttcccttgcaagacccatcagcagcttc 1283

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>emb|AL929244.8| Mouse DNA sequence from clone RP23-456L5 on chromosome 2, complete
            sequence
          Length = 86351

 Score = 44.1 bits (22), Expect = 0.73
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 731  ataaatatgtacaaagaattca 752
            ||||||||||||||||||||||
Sbjct: 1980 ataaatatgtacaaagaattca 2001

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>emb|CR855179.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0152K17,
             complete sequence
          Length = 97679

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 732   taaatatgtacaaagaattca 752
             |||||||||||||||||||||
Sbjct: 73186 taaatatgtacaaagaattca 73166

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>emb|CR855170.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818E04, complete
             sequence
          Length = 146307

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 732   taaatatgtacaaagaattca 752
             |||||||||||||||||||||
Sbjct: 17165 taaatatgtacaaagaattca 17145

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>gb|AC166798.3| Mus musculus chromosome 3, clone RP23-442J19, complete sequence
          Length = 216754

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 734    aatatgtacaaagaattcaag 754
              |||||||||||||||||||||
Sbjct: 103316 aatatgtacaaagaattcaag 103336

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>gb|AC164423.2| Mus musculus chromosome 3, clone RP24-361M10, complete sequence
          Length = 151556

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 734   aatatgtacaaagaattcaag 754
             |||||||||||||||||||||
Sbjct: 81024 aatatgtacaaagaattcaag 81044

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>gb|AC125113.3| Mus musculus BAC clone RP24-251K23 from chromosome 6, complete sequence
          Length = 127380

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 734   aatatgtacaaagaattcaag 754
             |||||||||||||||||||||
Sbjct: 46154 aatatgtacaaagaattcaag 46174

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>gb|AC105166.16| Mus musculus chromosome 5, clone RP24-311D15, complete sequence
          Length = 145019

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 729   caataaatatgtacaaagaat 749
             |||||||||||||||||||||
Sbjct: 19350 caataaatatgtacaaagaat 19330

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>gb|AY364845.1| Virus PhiCh1 pBgB51 capsid protein, int1, and capsid protein genes,
            complete cds
          Length = 5995

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 186  cgcggccgcgtcgtctgcgac 206
            |||||||||||||||||||||
Sbjct: 5722 cgcggccgcgtcgtctgcgac 5742

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>gb|AY364843.1| Virus PhiCh1 pBgB5 ORF34-5, integrase, and ORF36-5 genes, complete
            cds
          Length = 5995

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 186  cgcggccgcgtcgtctgcgac 206
            |||||||||||||||||||||
Sbjct: 5722 cgcggccgcgtcgtctgcgac 5742

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>gb|AC121296.7| Mus musculus chromosome 14, clone RP23-286K8, complete sequence
          Length = 232049

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 734    aatatgtacaaagaattcaag 754
              |||||||||||||||||||||
Sbjct: 126287 aatatgtacaaagaattcaag 126267

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>gb|AC157766.4| Mus musculus chromosome 1, clone RP24-318F24, complete sequence
          Length = 145303

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 734   aatatgtacaaagaattcaag 754
             |||||||||||||||||||||
Sbjct: 51189 aatatgtacaaagaattcaag 51209

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>gb|AC099506.3| Homo sapiens chromosome 16 clone RP11-22H5, complete sequence
          Length = 186318

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    aaaagtcaccaagctctaccc 39
             |||||||||||||||||||||
Sbjct: 38035 aaaagtcaccaagctctaccc 38055

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>gb|AF440695.1| Virus PhiCh1, complete genome
          Length = 58498

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 186   cgcggccgcgtcgtctgcgac 206
             |||||||||||||||||||||
Sbjct: 27029 cgcggccgcgtcgtctgcgac 27049

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 732      taaatatgtacaaagaattca 752
                |||||||||||||||||||||
Sbjct: 22339528 taaatatgtacaaagaattca 22339508

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 190      gccgcgtcgtctgcgacgtctgcgc 214
                ||||||||||||||| |||||||||
Sbjct: 11355976 gccgcgtcgtctgcgccgtctgcgc 11356000

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>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005J15, complete sequence
          Length = 159270

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 190   gccgcgtcgtctgcgacgtctgcgc 214
             ||||||||||||||| |||||||||
Sbjct: 67510 gccgcgtcgtctgcgccgtctgcgc 67534

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>dbj|AP006643.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34A19, TM0249,
             complete sequence
          Length = 111706

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 721   gatataatcaataaatatgta 741
             |||||||||||||||||||||
Sbjct: 94373 gatataatcaataaatatgta 94353

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>emb|AL845349.13| Mouse DNA sequence from clone RP23-311F6 on chromosome 2, complete
             sequence
          Length = 180824

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 734   aatatgtacaaagaattcaag 754
             |||||||||||||||||||||
Sbjct: 74478 aatatgtacaaagaattcaag 74458

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>gb|AC151055.3| Mus musculus BAC clone RP23-24A9 from 6, complete sequence
          Length = 230998

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 734    aatatgtacaaagaattcaag 754
              |||||||||||||||||||||
Sbjct: 167979 aatatgtacaaagaattcaag 167959

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>gb|AC103663.15| Mus musculus chromosome 1, clone RP23-219O12, complete sequence
          Length = 212662

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 734    aatatgtacaaagaattcaag 754
              |||||||||||||||||||||
Sbjct: 183095 aatatgtacaaagaattcaag 183115

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>gb|AC108791.9| Mus musculus chromosome 1, clone RP24-292D18, complete sequence
          Length = 162007

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 734    aatatgtacaaagaattcaag 754
              |||||||||||||||||||||
Sbjct: 111377 aatatgtacaaagaattcaag 111397

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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 732   taaatatgtacaaagaattca 752
             |||||||||||||||||||||
Sbjct: 90432 taaatatgtacaaagaattca 90412

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>emb|AL844891.7| Mouse DNA sequence from clone RP23-350N21 on chromosome 2, complete
             sequence
          Length = 138602

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 734   aatatgtacaaagaattcaag 754
             |||||||||||||||||||||
Sbjct: 77336 aatatgtacaaagaattcaag 77316

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>emb|AL772398.7| Mouse DNA sequence from clone RP23-173J23 on chromosome 2, complete
              sequence
          Length = 200773

 Score = 42.1 bits (21), Expect = 2.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 731    ataaatatgtacaaagaattc 751
              |||||||||||||||||||||
Sbjct: 200753 ataaatatgtacaaagaattc 200773


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 126,011,301
Number of extensions: 6931562
Number of successful extensions: 149415
Number of sequences better than 10.0: 38
Number of HSP's gapped: 149407
Number of HSP's successfully gapped: 41
Length of query: 770
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 748
Effective length of database: 18,508,616,841
Effective search space: 13844445397068
Effective search space used: 13844445397068
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result