ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf4e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O22315:SFRS1_ARATH Pre-mRNA-splicing factor SF2 - Arabidopsis th... 30 8.5
2Q8N884:CF150_HUMAN Uncharacterized protein C6orf150 - Homo sapie... 30 8.5

>O22315:SFRS1_ARATH Pre-mRNA-splicing factor SF2 - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 303
 Score = 30.4 bits (67), Expect = 8.5
 Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 21  PHPRRLRSIDRSPSLPSLASTQ*VPPS-PTPNLCAIHTDSHAR 146
           P PRR RS  RSP LPS+       PS P+P    IHT S +R
Sbjct: 262 PSPRRSRSRSRSP-LPSVQKEGSKSPSKPSPAKSPIHTRSPSR 303



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>Q8N884:CF150_HUMAN Uncharacterized protein C6orf150 - Homo sapiens (Human)|
          Length = 522

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +2

Query: 440 RQASCKQQRAGCSNRVLEAKAKEDAPSPAPPSQAGLRVRLIDRDA 574
           R  SC+Q+ A CS +        D PSP  P  A + VR   RDA
Sbjct: 117 RAGSCRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVR---RDA 158


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 123,226,739
Number of extensions: 2479978
Number of successful extensions: 6936
Number of sequences better than 10.0: 2
Number of HSP's gapped: 6925
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 100,686,439
Length adjustment: 111
Effective length of query: 157
Effective length of database: 70,239,694
Effective search space: 11027631958
Effective search space used: 11027631958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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