| Clone Name | FLbaf4e09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT828145.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA036L20, full insert sequence Length = 1059 Score = 529 bits (267), Expect = e-147 Identities = 444/503 (88%) Strand = Plus / Plus Query: 186 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 245 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 208 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 267 Query: 246 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccggaggactttg 305 ||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||| | Sbjct: 268 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccggacgacttcg 327 Query: 306 tgtatggagtgtatgacggccaccacacctatgatgaaggccaagaaaagaagggcttct 365 ||||||||||||||| || |||||||||||| ||||| |||||| ||||||||||| | Sbjct: 328 agtatggagtgtatgatggtcaccacacctataatgaaacccaagataagaagggctttt 387 Query: 366 gggaggatgtctccgagtggtaccaagaagctgagcctcctcagggtttccaagcgctca 425 ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| || | Sbjct: 388 gggaggatgtctctgagtggtaccaagaagctgaacctcctcagggcttccaagcactga 447 Query: 426 tctcctggtcatttccccccgcggtcatcctcggcatggctttcgatgtgccgggggagt 485 ||||||||| ||||| || || ||||||| |||||||| ||| |||| |||||||||| Sbjct: 448 tctcctggttgtttcctcctgcaatcatccttggcatggccttcaatgttccgggggagt 507 Query: 486 acctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagatggacaagc 545 |||| ||||| || || || | ||| |||||||||||||| | |||||||||||||| | Sbjct: 508 acctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagatggacaaac 567 Query: 546 cggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaagcgcgaca 605 | ||||| || ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 568 cagacaagccacacaactttgagccggagatctacatgatggagagatcggctcgcgaca 627 Query: 606 agctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcgagc 665 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 628 agctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcgagc 687 Query: 666 tctgggacttcaccgtcaacaga 688 ||||||||||||||||| ||||| Sbjct: 688 tctgggacttcaccgtcgacaga 710 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 48 gcagcagcagcagcttggcgtccgccatttctgc 81 |||||||||||||||||| ||||||||||||||| Sbjct: 43 gcagcagcagcagcttggtgtccgccatttctgc 76
>dbj|AK067717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117F22, full insert sequence Length = 1092 Score = 529 bits (267), Expect = e-147 Identities = 444/503 (88%) Strand = Plus / Plus Query: 186 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 245 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 202 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 261 Query: 246 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccggaggactttg 305 ||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||| | Sbjct: 262 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccggacgacttcg 321 Query: 306 tgtatggagtgtatgacggccaccacacctatgatgaaggccaagaaaagaagggcttct 365 ||||||||||||||| || |||||||| ||| ||||| |||||| ||||||||||| | Sbjct: 322 agtatggagtgtatgatggtcaccacacatataatgaaacccaagataagaagggctttt 381 Query: 366 gggaggatgtctccgagtggtaccaagaagctgagcctcctcagggtttccaagcgctca 425 ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| || | Sbjct: 382 gggaggatgtctctgagtggtaccaagaagctgaacctcctcagggcttccaagcactga 441 Query: 426 tctcctggtcatttccccccgcggtcatcctcggcatggctttcgatgtgccgggggagt 485 ||||||||| ||||| || || ||||||| |||||||| ||| |||| |||||||||| Sbjct: 442 tctcctggttgtttcctcctgcaatcatccttggcatggccttcaatgttccgggggagt 501 Query: 486 acctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagatggacaagc 545 |||| ||||| || || || | ||| |||||||||||||| | |||||||||||||| | Sbjct: 502 acctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagatggacaaac 561 Query: 546 cggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaagcgcgaca 605 ||||||| || ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 562 cggacaagccacacaactttgagccggagatctacatgatggagagatcggctcgcgaca 621 Query: 606 agctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcgagc 665 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 622 agctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcgagc 681 Query: 666 tctgggacttcaccgtcaacaga 688 ||||||||||||||||| ||||| Sbjct: 682 tctgggacttcaccgtcgacaga 704 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 48 gcagcagcagcagcttggcgtccgccatttctgc 81 |||||||||||||||||| ||||||||||||||| Sbjct: 37 gcagcagcagcagcttggtgtccgccatttctgc 70
>dbj|AK059975.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-A09, full insert sequence Length = 1077 Score = 529 bits (267), Expect = e-147 Identities = 444/503 (88%) Strand = Plus / Plus Query: 186 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 245 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 209 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 268 Query: 246 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccggaggactttg 305 ||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||| | Sbjct: 269 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccggacgacttcg 328 Query: 306 tgtatggagtgtatgacggccaccacacctatgatgaaggccaagaaaagaagggcttct 365 ||||||||||||||| || |||||||| ||| ||||| |||||| ||||||||||| | Sbjct: 329 agtatggagtgtatgatggtcaccacacatataatgaaacccaagataagaagggctttt 388 Query: 366 gggaggatgtctccgagtggtaccaagaagctgagcctcctcagggtttccaagcgctca 425 ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| || | Sbjct: 389 gggaggatgtctctgagtggtaccaagaagctgaacctcctcagggcttccaagcactga 448 Query: 426 tctcctggtcatttccccccgcggtcatcctcggcatggctttcgatgtgccgggggagt 485 ||||||||| ||||| || || ||||||| |||||||| ||| |||| |||||||||| Sbjct: 449 tctcctggttgtttcctcctgcaatcatccttggcatggccttcaatgttccgggggagt 508 Query: 486 acctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagatggacaagc 545 |||| ||||| || || || | ||| |||||||||||||| | |||||||||||||| | Sbjct: 509 acctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagatggacaaac 568 Query: 546 cggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaagcgcgaca 605 ||||||| || ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 569 cggacaagccacacaactttgagccggagatctacatgatggagagatcggctcgcgaca 628 Query: 606 agctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcgagc 665 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 629 agctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcgagc 688 Query: 666 tctgggacttcaccgtcaacaga 688 ||||||||||||||||| ||||| Sbjct: 689 tctgggacttcaccgtcgacaga 711 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 48 gcagcagcagcagcttggcgtccgccatttctgc 81 |||||||||||||||||| ||||||||||||||| Sbjct: 44 gcagcagcagcagcttggtgtccgccatttctgc 77
>dbj|AK059880.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H04, full insert sequence Length = 876 Score = 529 bits (267), Expect = e-147 Identities = 444/503 (88%) Strand = Plus / Plus Query: 186 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 245 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 209 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 268 Query: 246 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccggaggactttg 305 ||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||| | Sbjct: 269 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccggacgacttcg 328 Query: 306 tgtatggagtgtatgacggccaccacacctatgatgaaggccaagaaaagaagggcttct 365 ||||||||||||||| || |||||||| ||| ||||| |||||| ||||||||||| | Sbjct: 329 agtatggagtgtatgatggtcaccacacatataatgaaacccaagataagaagggctttt 388 Query: 366 gggaggatgtctccgagtggtaccaagaagctgagcctcctcagggtttccaagcgctca 425 ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| || | Sbjct: 389 gggaggatgtctctgagtggtaccaagaagctgaacctcctcagggcttccaagcactga 448 Query: 426 tctcctggtcatttccccccgcggtcatcctcggcatggctttcgatgtgccgggggagt 485 ||||||||| ||||| || || ||||||| |||||||| ||| |||| |||||||||| Sbjct: 449 tctcctggttgtttcctcctgcaatcatccttggcatggccttcaatgttccgggggagt 508 Query: 486 acctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagatggacaagc 545 |||| ||||| || || || | ||| |||||||||||||| | |||||||||||||| | Sbjct: 509 acctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagatggacaaac 568 Query: 546 cggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaagcgcgaca 605 ||||||| || ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 569 cggacaagccacacaactttgagccggagatctacatgatggagagatcggctcgcgaca 628 Query: 606 agctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcgagc 665 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 629 agctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcgagc 688 Query: 666 tctgggacttcaccgtcaacaga 688 ||||||||||||||||| ||||| Sbjct: 689 tctgggacttcaccgtcgacaga 711 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 48 gcagcagcagcagcttggcgtccgccatttctgc 81 |||||||||||||||||| ||||||||||||||| Sbjct: 44 gcagcagcagcagcttggtgtccgccatttctgc 77
>ref|NM_001051816.1| Oryza sativa (japonica cultivar-group) Os01g0929100 (Os01g0929100) mRNA, partial cds Length = 967 Score = 523 bits (264), Expect = e-145 Identities = 426/480 (88%) Strand = Plus / Plus Query: 209 agggctgggcccgggccgctgacggagatcgagccggacctgcaggaggaccccatcgac 268 ||||| ||||||||||| ||||||||||||||||| |||||| | ||||||||||| || Sbjct: 141 agggcggggcccgggccactgacggagatcgagcccgacctgaacgaggaccccattgat 200 Query: 269 aagtggcgcaccaacggcgtcagcccggaggactttgtgtatggagtgtatgacggccac 328 ||||||||||||||||||||||||||||| ||||| | ||||||||||||||| || ||| Sbjct: 201 aagtggcgcaccaacggcgtcagcccggacgacttcgagtatggagtgtatgatggtcac 260 Query: 329 cacacctatgatgaaggccaagaaaagaagggcttctgggaggatgtctccgagtggtac 388 ||||| ||| ||||| |||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 261 cacacatataatgaaacccaagataagaagggcttttgggaggatgtctctgagtggtac 320 Query: 389 caagaagctgagcctcctcagggtttccaagcgctcatctcctggtcatttccccccgcg 448 ||||||||||| ||||||||||| |||||||| || |||||||||| ||||| || || Sbjct: 321 caagaagctgaacctcctcagggcttccaagcactgatctcctggttgtttcctcctgca 380 Query: 449 gtcatcctcggcatggctttcgatgtgccgggggagtacctttacattggggcggctatc 508 ||||||| |||||||| ||| |||| |||||||||||||| ||||| || || || | Sbjct: 381 atcatccttggcatggccttcaatgttccgggggagtacctctacatcggcgcagcagtg 440 Query: 509 ttcatcgtcgtgttctgcatcatcgagatggacaagccggacaaaccgcacaactttgag 568 ||| |||||||||||||| | |||||||||||||| |||||||| || |||||||||||| Sbjct: 441 ttcgtcgtcgtgttctgcgttatcgagatggacaaaccggacaagccacacaactttgag 500 Query: 569 ccggagatctacatgatggagaggtccaagcgcgacaagctcatcgcggactacaactcc 628 ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| || Sbjct: 501 ccggagatctacatgatggagagatcggctcgcgacaagctcatcgccgactacaacacc 560 Query: 629 atggacatctgggacttcaacgagaagtacggcgagctctgggacttcaccgtcaacaga 688 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 561 atggacatctgggacttcaacgagaagtacggcgagctctgggacttcaccgtcgacaga 620 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 48 gcagcagcagcagcttggcgtccgccatttctgc 81 |||||||||||||||||| ||||||||||||||| Sbjct: 44 gcagcagcagcagcttggtgtccgccatttctgc 77
>dbj|AK105788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H02, full insert sequence Length = 967 Score = 519 bits (262), Expect = e-144 Identities = 421/474 (88%) Strand = Plus / Plus Query: 215 gggcccgggccgctgacggagatcgagccggacctgcaggaggaccccatcgacaagtgg 274 ||||||||||| ||||||||||||||||| |||||| | ||||||||||| || |||||| Sbjct: 147 gggcccgggccactgacggagatcgagcccgacctgaacgaggaccccattgataagtgg 206 Query: 275 cgcaccaacggcgtcagcccggaggactttgtgtatggagtgtatgacggccaccacacc 334 ||||||||||||||||||||||| ||||| | ||||||||||||||| || |||||||| Sbjct: 207 cgcaccaacggcgtcagcccggacgacttcgagtatggagtgtatgatggtcaccacaca 266 Query: 335 tatgatgaaggccaagaaaagaagggcttctgggaggatgtctccgagtggtaccaagaa 394 ||| ||||| |||||| ||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 267 tataatgaaacccaagataagaagggcttttgggaggatgtctctgagtggtaccaagaa 326 Query: 395 gctgagcctcctcagggtttccaagcgctcatctcctggtcatttccccccgcggtcatc 454 ||||| ||||||||||| |||||||| || |||||||||| ||||| || || ||||| Sbjct: 327 gctgaacctcctcagggcttccaagcactgatctcctggttgtttcctcctgcaatcatc 386 Query: 455 ctcggcatggctttcgatgtgccgggggagtacctttacattggggcggctatcttcatc 514 || |||||||| ||| |||| |||||||||||||| ||||| || || || | ||| || Sbjct: 387 cttggcatggccttcaatgttccgggggagtacctctacatcggcgcagcagtgttcgtc 446 Query: 515 gtcgtgttctgcatcatcgagatggacaagccggacaaaccgcacaactttgagccggag 574 |||||||||||| | |||||||||||||| |||||||| || |||||||||||||||||| Sbjct: 447 gtcgtgttctgcgttatcgagatggacaaaccggacaagccacacaactttgagccggag 506 Query: 575 atctacatgatggagaggtccaagcgcgacaagctcatcgcggactacaactccatggac 634 ||||||||||||||||| || ||||||||||||||||| ||||||||| |||||||| Sbjct: 507 atctacatgatggagagatcggctcgcgacaagctcatcgccgactacaacaccatggac 566 Query: 635 atctgggacttcaacgagaagtacggcgagctctgggacttcaccgtcaacaga 688 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 567 atctgggacttcaacgagaagtacggcgagctctgggacttcaccgtcgacaga 620 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 48 gcagcagcagcagcttggcgtccgccatttctgc 81 |||||||||||||||||| ||||||||||||||| Sbjct: 44 gcagcagcagcagcttggtgtccgccatttctgc 77
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 252 bits (127), Expect = 2e-63 Identities = 190/211 (90%) Strand = Plus / Plus Query: 478 gggggagtacctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagat 537 |||||||||||| ||||| || || || | ||| |||||||||||||| | |||||||| Sbjct: 40778525 gggggagtacctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagat 40778584 Query: 538 ggacaagccggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaa 597 |||||| |||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct: 40778585 ggacaaaccggacaagccacacaactttgagccggagatctacatgatggagagatcggc 40778644 Query: 598 gcgcgacaagctcatcgcggactacaactccatggacatctgggacttcaacgagaagta 657 ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 40778645 tcgcgacaagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagta 40778704 Query: 658 cggcgagctctgggacttcaccgtcaacaga 688 ||||||||||||||||||||||||| ||||| Sbjct: 40778705 cggcgagctctgggacttcaccgtcgacaga 40778735 Score = 125 bits (63), Expect = 3e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 186 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 245 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 40777696 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 40777755 Query: 246 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccgg 296 ||||| | ||||||||||| || |||||||||||||||||||||||||||| Sbjct: 40777756 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccgg 40777806 Score = 103 bits (52), Expect = 1e-18 Identities = 67/72 (93%) Strand = Plus / Plus Query: 348 aagaaaagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctc 407 |||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 40778151 aagataagaagggcttttgggaggatgtctctgagtggtaccaagaagctgaacctcctc 40778210 Query: 408 agggtttccaag 419 |||| ||||||| Sbjct: 40778211 agggcttccaag 40778222 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 48 gcagcagcagcagcttggcgtccgccatttctgc 81 |||||||||||||||||| ||||||||||||||| Sbjct: 40777531 gcagcagcagcagcttggtgtccgccatttctgc 40777564 Score = 42.1 bits (21), Expect = 3.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 307 gtatggagtgtatgacggccaccacacctatgatgaa 343 ||||||||||||||| || |||||||| ||| ||||| Sbjct: 40777982 gtatggagtgtatgatggtcaccacacatataatgaa 40778018
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12 Length = 167881 Score = 252 bits (127), Expect = 2e-63 Identities = 190/211 (90%) Strand = Plus / Plus Query: 478 gggggagtacctttacattggggcggctatcttcatcgtcgtgttctgcatcatcgagat 537 |||||||||||| ||||| || || || | ||| |||||||||||||| | |||||||| Sbjct: 81171 gggggagtacctctacatcggcgcagcagtgttcgtcgtcgtgttctgcgttatcgagat 81230 Query: 538 ggacaagccggacaaaccgcacaactttgagccggagatctacatgatggagaggtccaa 597 |||||| |||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct: 81231 ggacaaaccggacaagccacacaactttgagccggagatctacatgatggagagatcggc 81290 Query: 598 gcgcgacaagctcatcgcggactacaactccatggacatctgggacttcaacgagaagta 657 ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 81291 tcgcgacaagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagta 81350 Query: 658 cggcgagctctgggacttcaccgtcaacaga 688 ||||||||||||||||||||||||| ||||| Sbjct: 81351 cggcgagctctgggacttcaccgtcgacaga 81381 Score = 125 bits (63), Expect = 3e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 186 gcagcggcagggcggtggcagtgagggctgggcccgggccgctgacggagatcgagccgg 245 |||| ||| ||||||||| | |||||| ||||||||||| ||||||||||||||||| | Sbjct: 80342 gcagaggccgggcggtggtggcgagggcggggcccgggccactgacggagatcgagcccg 80401 Query: 246 acctgcaggaggaccccatcgacaagtggcgcaccaacggcgtcagcccgg 296 ||||| | ||||||||||| || |||||||||||||||||||||||||||| Sbjct: 80402 acctgaacgaggaccccattgataagtggcgcaccaacggcgtcagcccgg 80452 Score = 103 bits (52), Expect = 1e-18 Identities = 67/72 (93%) Strand = Plus / Plus Query: 348 aagaaaagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctc 407 |||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 80797 aagataagaagggcttttgggaggatgtctctgagtggtaccaagaagctgaacctcctc 80856 Query: 408 agggtttccaag 419 |||| ||||||| Sbjct: 80857 agggcttccaag 80868 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 48 gcagcagcagcagcttggcgtccgccatttctgc 81 |||||||||||||||||| ||||||||||||||| Sbjct: 80177 gcagcagcagcagcttggtgtccgccatttctgc 80210 Score = 42.1 bits (21), Expect = 3.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 307 gtatggagtgtatgacggccaccacacctatgatgaa 343 ||||||||||||||| || |||||||| ||| ||||| Sbjct: 80628 gtatggagtgtatgatggtcaccacacatataatgaa 80664
>dbj|AK060605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B09, full insert sequence Length = 255 Score = 155 bits (78), Expect = 3e-34 Identities = 87/90 (96%) Strand = Plus / Plus Query: 599 cgcgacaagctcatcgcggactacaactccatggacatctgggacttcaacgagaagtac 658 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1 cgcgacaagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtac 60 Query: 659 ggcgagctctgggacttcaccgtcaacaga 688 |||||||||||||||||||||||| ||||| Sbjct: 61 ggcgagctctgggacttcaccgtcgacaga 90
>ref|NM_001061215.1| Oryza sativa (japonica cultivar-group) Os05g0153600 (Os05g0153600) mRNA, complete cds Length = 912 Score = 77.8 bits (39), Expect = 6e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 353 aagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctcagggt 412 ||||||| |||||||||||||||||| || ||||| |||||| |||| ||||||||||| Sbjct: 546 aagaaggtcttctgggaggatgtctctgaatggtatcaagaaactgaacctcctcagggc 605 Query: 413 ttccaag 419 ||||||| Sbjct: 606 ttccaag 612
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 77.8 bits (39), Expect = 6e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 353 aagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctcagggt 412 ||||||| |||||||||||||||||| || ||||| |||||| |||| ||||||||||| Sbjct: 24855 aagaaggtcttctgggaggatgtctctgaatggtatcaagaaactgaacctcctcagggc 24796 Query: 413 ttccaag 419 ||||||| Sbjct: 24795 ttccaag 24789
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 77.8 bits (39), Expect = 6e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 353 aagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctcagggt 412 ||||||| |||||||||||||||||| || ||||| |||||| |||| ||||||||||| Sbjct: 131627 aagaaggtcttctgggaggatgtctctgaatggtatcaagaaactgaacctcctcagggc 131568 Query: 413 ttccaag 419 ||||||| Sbjct: 131567 ttccaag 131561
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 77.8 bits (39), Expect = 6e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 353 aagaagggcttctgggaggatgtctccgagtggtaccaagaagctgagcctcctcagggt 412 ||||||| |||||||||||||||||| || ||||| |||||| |||| ||||||||||| Sbjct: 3037611 aagaaggtcttctgggaggatgtctctgaatggtatcaagaaactgaacctcctcagggc 3037552 Query: 413 ttccaag 419 ||||||| Sbjct: 3037551 ttccaag 3037545
>ref|XM_634033.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0218472) mRNA, complete cds Length = 3960 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Minus Query: 42 tgagcggcagcagcagcagcttg 64 ||||||||||||||||||||||| Sbjct: 2579 tgagcggcagcagcagcagcttg 2557
>gb|AY116586.1| Sus scrofa diacylglycerol acyltransferase (DGAT1) gene, complete cds Length = 9303 Score = 44.1 bits (22), Expect = 0.87 Identities = 22/22 (100%) Strand = Plus / Plus Query: 45 gcggcagcagcagcagcttggc 66 |||||||||||||||||||||| Sbjct: 7934 gcggcagcagcagcagcttggc 7955
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 aatgagcggcagcagcagcag 60 ||||||||||||||||||||| Sbjct: 15521166 aatgagcggcagcagcagcag 15521186
>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence Length = 100836 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 tgctcgtcctcgccgtggcgc 114 ||||||||||||||||||||| Sbjct: 39324 tgctcgtcctcgccgtggcgc 39304
>gb|AC134453.4| Mus musculus BAC clone RP24-263P23 from chromosome 15, complete sequence Length = 131905 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 ctgcagcagccactgctgctc 98 ||||||||||||||||||||| Sbjct: 18651 ctgcagcagccactgctgctc 18631
>gb|AC130203.4| Mus musculus BAC clone RP24-413E20 from chromosome 15, complete sequence Length = 182040 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 ctgcagcagccactgctgctc 98 ||||||||||||||||||||| Sbjct: 174949 ctgcagcagccactgctgctc 174929
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 450 tcatcctcggcatggctttcg 470 ||||||||||||||||||||| Sbjct: 444468 tcatcctcggcatggctttcg 444488
>gb|AC104958.6| Homo sapiens chromosome 8, clone RP11-713M15, complete sequence Length = 188326 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 784 cactctaaggaaaccagggat 804 ||||||||||||||||||||| Sbjct: 42435 cactctaaggaaaccagggat 42455
>gb|AC106013.2| Homo sapiens chromosome 8, clone RP11-1109L18, complete sequence Length = 166093 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 784 cactctaaggaaaccagggat 804 ||||||||||||||||||||| Sbjct: 50041 cactctaaggaaaccagggat 50021
>gb|AC009753.5|AC009753 Homo sapiens chromosome 15 clone RP11-416K5 map 15q21.1, complete sequence Length = 158405 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 caagaaaagaagggcttctgg 367 ||||||||||||||||||||| Sbjct: 116360 caagaaaagaagggcttctgg 116380
>gb|AC007815.7|AC007815 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone BACR07I18, complete sequence Length = 159413 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 aatgagcggcagcagcagcag 60 ||||||||||||||||||||| Sbjct: 118673 aatgagcggcagcagcagcag 118693
>gb|AC008142.2|AC008142 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone BACR48D03, complete sequence Length = 175917 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 aatgagcggcagcagcagcag 60 ||||||||||||||||||||| Sbjct: 4397 aatgagcggcagcagcagcag 4417
>dbj|AP005716.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1445E9, complete sequence Length = 151880 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 784 cactctaaggaaaccagggat 804 ||||||||||||||||||||| Sbjct: 11223 cactctaaggaaaccagggat 11203
>emb|BX088535.6| Zebrafish DNA sequence from clone DKEY-18F5 in linkage group 14, complete sequence Length = 197465 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 tgcatcatcgagatggacaag 544 ||||||||||||||||||||| Sbjct: 187102 tgcatcatcgagatggacaag 187082
>gb|AC113480.8| Mus musculus chromosome 13, clone RP23-309D8, complete sequence Length = 181457 Score = 42.1 bits (21), Expect = 3.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 180 gcagtggcagcggcagggcggtggcagtg 208 |||||||||| ||||| |||||||||||| Sbjct: 37393 gcagtggcagtggcagcgcggtggcagtg 37365
>emb|AL807786.6| Mouse DNA sequence from clone RP23-320I1 on chromosome 4, complete sequence Length = 206324 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 878 gtaatagtctaaaattgtaga 898 ||||||||||||||||||||| Sbjct: 196902 gtaatagtctaaaattgtaga 196922
>emb|Y15249.1|DM4FRNPE Drosophila melanogaster mRNA for edited RNA binding protein Length = 3181 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 atgagcggcagcagcagcagc 61 ||||||||||||||||||||| Sbjct: 2145 atgagcggcagcagcagcagc 2165
>dbj|AP004387.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1201B11 Length = 156200 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 784 cactctaaggaaaccagggat 804 ||||||||||||||||||||| Sbjct: 143098 cactctaaggaaaccagggat 143078 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 152,362,392 Number of extensions: 8753249 Number of successful extensions: 354838 Number of sequences better than 10.0: 31 Number of HSP's gapped: 354830 Number of HSP's successfully gapped: 45 Length of query: 916 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 893 Effective length of database: 18,503,978,556 Effective search space: 16524052850508 Effective search space used: 16524052850508 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)