ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf6n19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q96563:HEM12_HORVU Glutamyl-tRNA reductase 2 - Hordeum vulgare (... 39 0.007
2Q42843:HEM11_HORVU Glutamyl-tRNA reductase 1, chloroplast precur... 39 0.007
3O48674:HEM1_ORYSA Glutamyl-tRNA reductase, chloroplast precursor... 35 0.10
4O65796:HEM13_HORVU Glutamyl-tRNA reductase 3, chloroplast precur... 31 1.1
5Q9V776:CP317_DROME Probable cytochrome P450 317a1 - Drosophila m... 30 2.5
6Q28263:PDE6A_CANFA Rod cGMP-specific 3',5'-cyclic phosphodiester... 29 4.3
7O13731:UBR11_SCHPO E3 ubiquitin-protein ligase ubr11 - Schizosac... 29 4.3
8P93111:HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplast precur... 29 4.3
9P40528:SYG1_YEAST Protein SYG1 - Saccharomyces cerevisiae (Baker... 28 7.3
10P11541:PDE6A_BOVIN Rod cGMP-specific 3',5'-cyclic phosphodiester... 28 7.3
11Q9Z985:UVRA_CHLPN UvrABC system protein A - Chlamydia pneumoniae... 28 9.6

>Q96563:HEM12_HORVU Glutamyl-tRNA reductase 2 - Hordeum vulgare (Barley)|
          Length = 465
 Score = 38.5 bits (88), Expect = 0.007
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TEKAVLEQKIKAKVEKTQS 59
           TEKAVLEQKIKAKVEKTQS
Sbjct: 447 TEKAVLEQKIKAKVEKTQS 465



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>Q42843:HEM11_HORVU Glutamyl-tRNA reductase 1, chloroplast precursor - Hordeum vulgare|
           (Barley)
          Length = 527

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TEKAVLEQKIKAKVEKTQS 59
           TEKAVLEQKIKAKVEKTQS
Sbjct: 509 TEKAVLEQKIKAKVEKTQS 527



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>O48674:HEM1_ORYSA Glutamyl-tRNA reductase, chloroplast precursor - Oryza sativa|
           (Rice)
          Length = 537

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = +3

Query: 3   TEKAVLEQKIKAKVEKTQS 59
           TEKA++EQKIKAKVEK+Q+
Sbjct: 519 TEKAIIEQKIKAKVEKSQN 537



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>O65796:HEM13_HORVU Glutamyl-tRNA reductase 3, chloroplast precursor - Hordeum vulgare|
           (Barley)
          Length = 535

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 3   TEKAVLEQKIKAKVEKTQS 59
           TEKAV+EQKIK KVEK ++
Sbjct: 515 TEKAVMEQKIKTKVEKQKT 533



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>Q9V776:CP317_DROME Probable cytochrome P450 317a1 - Drosophila melanogaster (Fruit|
           fly)
          Length = 518

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 100 IPPHPPECRYILSIPVFLFVPTYC*VHHTPNV 195
           +P HP   +YIL   +FL +PT+  +HH P++
Sbjct: 399 VPDHP---KYILVKELFLIIPTHA-IHHDPDI 426



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>Q28263:PDE6A_CANFA Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha -|
           Canis familiaris (Dog)
          Length = 861

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 318 QQSII*YSLKNWALTTAATITNVHRQAVLEQTCFAAPRS 202
           + S+  Y ++N     A  + NVH+ AVLE+ C  AP S
Sbjct: 93  RMSLFMYRVRNGIAELATRLFNVHKDAVLEE-CLVAPDS 130



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>O13731:UBR11_SCHPO E3 ubiquitin-protein ligase ubr11 - Schizosaccharomyces pombe|
            (Fission yeast)
          Length = 2052

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 364  FFASINTLIYSCL-FRPTEYYIVQLEKLGSN 275
            FFA++N   +S + FR  EY +VQ E  GS+
Sbjct: 1131 FFAAVNASTFSLIIFRAIEYALVQAESFGSS 1161



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>P93111:HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplast precursor - Cucumis sativus|
           (Cucumber)
          Length = 552

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 3   TEKAVLEQKIKAKVEKTQ 56
           TE AVLEQKI+AKVE+ Q
Sbjct: 534 TEIAVLEQKIRAKVEQNQ 551



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>P40528:SYG1_YEAST Protein SYG1 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 902

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 166 YC*VHHTPNVL*RSRSSEACLLQNCLPVYISYCGC 270
           +C   HTPN L  S  S A  + +CLP Y  +  C
Sbjct: 596 FCVYSHTPNNLCGSSHSRAMGVLSCLPSYWRFMQC 630



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>P11541:PDE6A_BOVIN Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha -|
           Bos taurus (Bovine)
          Length = 859

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 318 QQSII*YSLKNWALTTAATITNVHRQAVLEQTCFAAPRS 202
           + S+  Y  +N     A  + NVH+ AVLE+ C  AP S
Sbjct: 93  RMSLFMYRARNGIAELATRLFNVHKDAVLEE-CLVAPDS 130



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>Q9Z985:UVRA_CHLPN UvrABC system protein A - Chlamydia pneumoniae (Chlamydophila|
            pneumoniae)
          Length = 1826

 Score = 28.1 bits (61), Expect = 9.6
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 63   GPGDGPP--FCISTYTTPPPRMSLHSIYPSIPFCPYLLLSSS 182
            GPG GP   F + + T   P + LH+  P    CP   LS S
Sbjct: 1457 GPGSGPQGGFLMDSDTEVCPSVDLHANVPQTEVCPKAPLSIS 1498


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 73,954,471
Number of extensions: 1764690
Number of successful extensions: 3586
Number of sequences better than 10.0: 11
Number of HSP's gapped: 3586
Number of HSP's successfully gapped: 11
Length of query: 125
Length of database: 100,686,439
Length adjustment: 92
Effective length of query: 33
Effective length of database: 75,451,299
Effective search space: 2489892867
Effective search space used: 2489892867
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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