| Clone Name | FLbaf11k04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108509.1| Zea mays PCO117578 mRNA sequence Length = 806 Score = 389 bits (196), Expect = e-104 Identities = 320/359 (89%), Gaps = 8/359 (2%) Strand = Plus / Plus Query: 262 gagccggccaataacggctggtggctcaccgagttccccctgccggtgcccaagatccgc 321 ||||||||||| |||||||||||||| |||||||||||| |||| |||||||||||| | Sbjct: 272 gagccggccaacaacggctggtggctgaccgagttccccttgcccgtgcccaagatcgtc 331 Query: 322 aacaaggagatcaacaatggcgagacagggacgcgatccttcgtgaagaacggcatctac 381 ||||||||||||||||| | ||||| || ||||| |||||| | ||||||||||||||| Sbjct: 332 aacaaggagatcaacaacgcggagacgggcacgcgctccttcctcaagaacggcatctac 391 Query: 382 atggcggacatcgggccgagcttcgcggcgcacgcctaccgggtgcgcagctctgccttc 441 ||||||||||||||||| ||||||||||||||||| |||||| |||||||| | |||||| Sbjct: 392 atggcggacatcgggcccagcttcgcggcgcacgcgtaccggctgcgcagcacggccttc 451 Query: 442 gacctgctggcgctggaggacctgctcggcaaagaggcctccaactatgtcaacaagtac 501 |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||| Sbjct: 452 gacctgctggcgctggaggacctgctgggcaaggacgcctccaactacgtcaacaagtac 511 Query: 502 ctccgcctcaaggccaccttcatatactacgacttcgacaagctcatcaccgccgcagac 561 |||||||||||| |||||||||| |||||||||||||||||||||||| |||||| Sbjct: 512 ctccgcctcaagtccaccttcatgtactacgacttcgacaagctcatctccgccg----- 566 Query: 562 cccgacgccaagccaccgcttctt-gacctcgccaaccggctcttcgacagcttcgaga 619 |||| | |||||| || |||| | |||||||||||||| ||||||||||||||||||| Sbjct: 567 -ccgaagacaagccgcc-cttcgtcgacctcgccaaccgcctcttcgacagcttcgaga 623
>emb|CT829422.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI005M17, full insert sequence Length = 808 Score = 244 bits (123), Expect = 5e-61 Identities = 306/366 (83%), Gaps = 12/366 (3%) Strand = Plus / Plus Query: 262 gagccggccaataacggctggtggctcaccgagttccccctgccggtgcccaagatccgc 321 |||||||| || || || |||||||||||||||||||| |||||||||| ||||| | Sbjct: 257 gagccggcaaacaatgggtggtggctcaccgagttccctttgccggtgccaaagattgtc 316 Query: 322 aacaaggagatcaacaatggcgagacagggacgcgatccttcgtgaagaacggcatctac 381 ||||||||| | |||||||||||||| |||| || | ||||||| ||||||||||||| Sbjct: 317 aacaaggagctgaacaatggcgagacggggagccggacgttcgtgaggaacggcatctac 376 Query: 382 atggcggacatcgggccgagcttcgcggcgcacgcctaccgggtgcgcagctctgccttc 441 || || |||||||||||||||| |||||||||||| ||| || |||| ||| | || ||| Sbjct: 377 atagccgacatcgggccgagctacgcggcgcacgcgtacaggctgcggagcacggcgttc 436 Query: 442 gacctgctggcgctggaggacctgctcggcaaagaggcc------tccaactatgtcaac 495 |||||||||||||||||||||||||| ||||| | ||| ||||||| |||| | Sbjct: 437 gacctgctggcgctggaggacctgctgggcaacaacgccgacagggccaactacgtcacc 496 Query: 496 aagtacctccgcctcaaggccaccttcatatactacgacttcgacaagctcatcaccgcc 555 |||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||| Sbjct: 497 aagtacctccgcctcaagtccaccttcatgtacttcgacttcgacaagctcatctccgcc 556 Query: 556 gcagaccccgacgccaag---ccaccgcttcttgacctcgccaaccggctcttcgacagc 612 || | |||||| | || || ||||| || |||||||||| ||| |||||||||||| Sbjct: 557 gc---ctccgacgaccagcgccccccgctgctcgacctcgccacccgcctcttcgacagc 613 Query: 613 ttcgag 618 |||||| Sbjct: 614 ttcgag 619 Score = 54.0 bits (27), Expect = 9e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 639 caccaaggatgacaccgacataggatcctgctatgctgacacaaagctcatactgcagga 698 ||||||||| |||||| | || || |||| |||||| ||||| ||| |||| || ||||| Sbjct: 640 caccaaggacgacacccagatcggctcctcctatgccgacaccaagatcatcctccagga 699 Query: 699 ggtcatgacaa 709 ||||||||||| Sbjct: 700 ggtcatgacaa 710
>ref|NM_001065233.1| Oryza sativa (japonica cultivar-group) Os07g0105600 (Os07g0105600) mRNA, complete cds Length = 779 Score = 244 bits (123), Expect = 5e-61 Identities = 306/366 (83%), Gaps = 12/366 (3%) Strand = Plus / Plus Query: 262 gagccggccaataacggctggtggctcaccgagttccccctgccggtgcccaagatccgc 321 |||||||| || || || |||||||||||||||||||| |||||||||| ||||| | Sbjct: 234 gagccggcaaacaatgggtggtggctcaccgagttccctttgccggtgccaaagattgtc 293 Query: 322 aacaaggagatcaacaatggcgagacagggacgcgatccttcgtgaagaacggcatctac 381 ||||||||| | |||||||||||||| |||| || | ||||||| ||||||||||||| Sbjct: 294 aacaaggagctgaacaatggcgagacggggagccggacgttcgtgaggaacggcatctac 353 Query: 382 atggcggacatcgggccgagcttcgcggcgcacgcctaccgggtgcgcagctctgccttc 441 || || |||||||||||||||| |||||||||||| ||| || |||| ||| | || ||| Sbjct: 354 atagccgacatcgggccgagctacgcggcgcacgcgtacaggctgcggagcacggcgttc 413 Query: 442 gacctgctggcgctggaggacctgctcggcaaagaggcc------tccaactatgtcaac 495 |||||||||||||||||||||||||| ||||| | ||| ||||||| |||| | Sbjct: 414 gacctgctggcgctggaggacctgctgggcaacaacgccgacagggccaactacgtcacc 473 Query: 496 aagtacctccgcctcaaggccaccttcatatactacgacttcgacaagctcatcaccgcc 555 |||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||| Sbjct: 474 aagtacctccgcctcaagtccaccttcatgtacttcgacttcgacaagctcatctccgcc 533 Query: 556 gcagaccccgacgccaag---ccaccgcttcttgacctcgccaaccggctcttcgacagc 612 || | |||||| | || || ||||| || |||||||||| ||| |||||||||||| Sbjct: 534 gc---ctccgacgaccagcgccccccgctgctcgacctcgccacccgcctcttcgacagc 590 Query: 613 ttcgag 618 |||||| Sbjct: 591 ttcgag 596 Score = 46.1 bits (23), Expect = 0.22 Identities = 56/67 (83%) Strand = Plus / Plus Query: 639 caccaaggatgacaccgacataggatcctgctatgctgacacaaagctcatactgcagga 698 ||||||||| |||||| | || || |||| |||||| ||||| ||| |||| || ||||| Sbjct: 617 caccaaggacgacacccagatcggctcctcctatgccgacaccaagatcatcctccagga 676 Query: 699 ggtcatg 705 ||||||| Sbjct: 677 ggtcatg 683
>dbj|AK068377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148M09, full insert sequence Length = 791 Score = 244 bits (123), Expect = 5e-61 Identities = 306/366 (83%), Gaps = 12/366 (3%) Strand = Plus / Plus Query: 262 gagccggccaataacggctggtggctcaccgagttccccctgccggtgcccaagatccgc 321 |||||||| || || || |||||||||||||||||||| |||||||||| ||||| | Sbjct: 236 gagccggcaaacaatgggtggtggctcaccgagttccctttgccggtgccaaagattgtc 295 Query: 322 aacaaggagatcaacaatggcgagacagggacgcgatccttcgtgaagaacggcatctac 381 ||||||||| | |||||||||||||| |||| || | ||||||| ||||||||||||| Sbjct: 296 aacaaggagctgaacaatggcgagacggggagccggacgttcgtgaggaacggcatctac 355 Query: 382 atggcggacatcgggccgagcttcgcggcgcacgcctaccgggtgcgcagctctgccttc 441 || || |||||||||||||||| |||||||||||| ||| || |||| ||| | || ||| Sbjct: 356 atagccgacatcgggccgagctacgcggcgcacgcgtacaggctgcggagcacggcgttc 415 Query: 442 gacctgctggcgctggaggacctgctcggcaaagaggcc------tccaactatgtcaac 495 |||||||||||||||||||||||||| ||||| | ||| ||||||| |||| | Sbjct: 416 gacctgctggcgctggaggacctgctgggcaacaacgccgacagggccaactacgtcacc 475 Query: 496 aagtacctccgcctcaaggccaccttcatatactacgacttcgacaagctcatcaccgcc 555 |||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||| Sbjct: 476 aagtacctccgcctcaagtccaccttcatgtacttcgacttcgacaagctcatctccgcc 535 Query: 556 gcagaccccgacgccaag---ccaccgcttcttgacctcgccaaccggctcttcgacagc 612 || | |||||| | || || ||||| || |||||||||| ||| |||||||||||| Sbjct: 536 gc---ctccgacgaccagcgccccccgctgctcgacctcgccacccgcctcttcgacagc 592 Query: 613 ttcgag 618 |||||| Sbjct: 593 ttcgag 598 Score = 46.1 bits (23), Expect = 0.22 Identities = 56/67 (83%) Strand = Plus / Plus Query: 639 caccaaggatgacaccgacataggatcctgctatgctgacacaaagctcatactgcagga 698 ||||||||| |||||| | || || |||| |||||| ||||| ||| |||| || ||||| Sbjct: 619 caccaaggacgacacccagatcggctcctcctatgccgacaccaagatcatcctccagga 678 Query: 699 ggtcatg 705 ||||||| Sbjct: 679 ggtcatg 685
>emb|CT829421.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA007I04, full insert sequence Length = 853 Score = 236 bits (119), Expect = 1e-58 Identities = 290/346 (83%), Gaps = 12/346 (3%) Strand = Plus / Plus Query: 282 gtggctcaccgagttccccctgccggtgcccaagatccgcaacaaggagatcaacaatgg 341 |||||||||||||||||| |||||||||| ||||| |||||||||| | |||||||| Sbjct: 242 gtggctcaccgagttccctttgccggtgccaaagattgtcaacaaggagctgaacaatgg 301 Query: 342 cgagacagggacgcgatccttcgtgaagaacggcatctacatggcggacatcgggccgag 401 |||||| |||| || | ||||||| ||||||||||||||| || |||||||||||||| Sbjct: 302 cgagacggggagccggacgttcgtgaggaacggcatctacatagccgacatcgggccgag 361 Query: 402 cttcgcggcgcacgcctaccgggtgcgcagctctgccttcgacctgctggcgctggagga 461 || |||||||||||| ||| || |||| ||| | || ||||||||||||||||||||||| Sbjct: 362 ctacgcggcgcacgcgtacaggctgcggagcacggcgttcgacctgctggcgctggagga 421 Query: 462 cctgctcggcaaagaggcc------tccaactatgtcaacaagtacctccgcctcaaggc 515 |||||| ||||| | ||| ||||||| |||| ||||||||||||||||||| | Sbjct: 422 cctgctgggcaacaacgccgacagggccaactacgtcaccaagtacctccgcctcaagtc 481 Query: 516 caccttcatatactacgacttcgacaagctcatcaccgccgcagaccccgacgccaag-- 573 ||||||||| |||| ||||||||||||||||||| ||||||| | |||||| | || Sbjct: 482 caccttcatgtacttcgacttcgacaagctcatctccgccgc---ctccgacgaccagcg 538 Query: 574 -ccaccgcttcttgacctcgccaaccggctcttcgacagcttcgag 618 || ||||| || |||||||||| ||| |||||||||||||||||| Sbjct: 539 ccccccgctgctcgacctcgccacccgcctcttcgacagcttcgag 584 Score = 54.0 bits (27), Expect = 9e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 639 caccaaggatgacaccgacataggatcctgctatgctgacacaaagctcatactgcagga 698 ||||||||| |||||| | || || |||| |||||| ||||| ||| |||| || ||||| Sbjct: 605 caccaaggacgacacccagatcggctcctcctatgccgacaccaagatcatcctccagga 664 Query: 699 ggtcatgacaa 709 ||||||||||| Sbjct: 665 ggtcatgacaa 675
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 196 bits (99), Expect = 1e-46 Identities = 246/294 (83%), Gaps = 12/294 (4%) Strand = Plus / Plus Query: 334 aacaatggcgagacagggacgcgatccttcgtgaagaacggcatctacatggcggacatc 393 |||||||||||||| |||| || | ||||||| ||||||||||||||| || |||||| Sbjct: 305495 aacaatggcgagacggggagccggacgttcgtgaggaacggcatctacatagccgacatc 305554 Query: 394 gggccgagcttcgcggcgcacgcctaccgggtgcgcagctctgccttcgacctgctggcg 453 |||||||||| |||||||||||| ||| || |||| ||| | || ||||||||||||||| Sbjct: 305555 gggccgagctacgcggcgcacgcgtacaggctgcggagcacggcgttcgacctgctggcg 305614 Query: 454 ctggaggacctgctcggcaaagaggcc------tccaactatgtcaacaagtacctccgc 507 |||||||||||||| ||||| | ||| ||||||| |||| ||||||||||||| Sbjct: 305615 ctggaggacctgctgggcaacaacgccgacagggccaactacgtcaccaagtacctccgc 305674 Query: 508 ctcaaggccaccttcatatactacgacttcgacaagctcatcaccgccgcagaccccgac 567 |||||| |||||||||| |||| ||||||||||||||||||| ||||||| | ||||| Sbjct: 305675 ctcaagtccaccttcatgtacttcgacttcgacaagctcatctccgccgc---ctccgac 305731 Query: 568 gccaag---ccaccgcttcttgacctcgccaaccggctcttcgacagcttcgag 618 | | || || ||||| || |||||||||| ||| |||||||||||||||||| Sbjct: 305732 gaccagcgccccccgctgctcgacctcgccacccgcctcttcgacagcttcgag 305785 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 262 gagccggccaataacggctggtggctcaccgagttccccctgccggtgcccaagat 317 |||||||| || || || |||||||||||||||||||| |||||||||| ||||| Sbjct: 305287 gagccggcaaacaatgggtggtggctcaccgagttccctttgccggtgccaaagat 305342 Score = 46.1 bits (23), Expect = 0.22 Identities = 56/67 (83%) Strand = Plus / Plus Query: 639 caccaaggatgacaccgacataggatcctgctatgctgacacaaagctcatactgcagga 698 ||||||||| |||||| | || || |||| |||||| ||||| ||| |||| || ||||| Sbjct: 305806 caccaaggacgacacccagatcggctcctcctatgccgacaccaagatcatcctccagga 305865 Query: 699 ggtcatg 705 ||||||| Sbjct: 305866 ggtcatg 305872 Score = 42.1 bits (21), Expect = 3.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 388 gacatcgggccgagcttcgcggcgcacgc 416 |||||||||||||||| | |||||||||| Sbjct: 2468957 gacatcgggccgagctacccggcgcacgc 2468929
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 196 bits (99), Expect = 1e-46 Identities = 246/294 (83%), Gaps = 12/294 (4%) Strand = Plus / Plus Query: 334 aacaatggcgagacagggacgcgatccttcgtgaagaacggcatctacatggcggacatc 393 |||||||||||||| |||| || | ||||||| ||||||||||||||| || |||||| Sbjct: 140359 aacaatggcgagacggggagccggacgttcgtgaggaacggcatctacatagccgacatc 140418 Query: 394 gggccgagcttcgcggcgcacgcctaccgggtgcgcagctctgccttcgacctgctggcg 453 |||||||||| |||||||||||| ||| || |||| ||| | || ||||||||||||||| Sbjct: 140419 gggccgagctacgcggcgcacgcgtacaggctgcggagcacggcgttcgacctgctggcg 140478 Query: 454 ctggaggacctgctcggcaaagaggcc------tccaactatgtcaacaagtacctccgc 507 |||||||||||||| ||||| | ||| ||||||| |||| ||||||||||||| Sbjct: 140479 ctggaggacctgctgggcaacaacgccgacagggccaactacgtcaccaagtacctccgc 140538 Query: 508 ctcaaggccaccttcatatactacgacttcgacaagctcatcaccgccgcagaccccgac 567 |||||| |||||||||| |||| ||||||||||||||||||| ||||||| | ||||| Sbjct: 140539 ctcaagtccaccttcatgtacttcgacttcgacaagctcatctccgccgc---ctccgac 140595 Query: 568 gccaag---ccaccgcttcttgacctcgccaaccggctcttcgacagcttcgag 618 | | || || ||||| || |||||||||| ||| |||||||||||||||||| Sbjct: 140596 gaccagcgccccccgctgctcgacctcgccacccgcctcttcgacagcttcgag 140649 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 262 gagccggccaataacggctggtggctcaccgagttccccctgccggtgcccaagat 317 |||||||| || || || |||||||||||||||||||| |||||||||| ||||| Sbjct: 140151 gagccggcaaacaatgggtggtggctcaccgagttccctttgccggtgccaaagat 140206 Score = 46.1 bits (23), Expect = 0.22 Identities = 56/67 (83%) Strand = Plus / Plus Query: 639 caccaaggatgacaccgacataggatcctgctatgctgacacaaagctcatactgcagga 698 ||||||||| |||||| | || || |||| |||||| ||||| ||| |||| || ||||| Sbjct: 140670 caccaaggacgacacccagatcggctcctcctatgccgacaccaagatcatcctccagga 140729 Query: 699 ggtcatg 705 ||||||| Sbjct: 140730 ggtcatg 140736
>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1317D11 Length = 135043 Score = 196 bits (99), Expect = 1e-46 Identities = 246/294 (83%), Gaps = 12/294 (4%) Strand = Plus / Plus Query: 334 aacaatggcgagacagggacgcgatccttcgtgaagaacggcatctacatggcggacatc 393 |||||||||||||| |||| || | ||||||| ||||||||||||||| || |||||| Sbjct: 29733 aacaatggcgagacggggagccggacgttcgtgaggaacggcatctacatagccgacatc 29792 Query: 394 gggccgagcttcgcggcgcacgcctaccgggtgcgcagctctgccttcgacctgctggcg 453 |||||||||| |||||||||||| ||| || |||| ||| | || ||||||||||||||| Sbjct: 29793 gggccgagctacgcggcgcacgcgtacaggctgcggagcacggcgttcgacctgctggcg 29852 Query: 454 ctggaggacctgctcggcaaagaggcc------tccaactatgtcaacaagtacctccgc 507 |||||||||||||| ||||| | ||| ||||||| |||| ||||||||||||| Sbjct: 29853 ctggaggacctgctgggcaacaacgccgacagggccaactacgtcaccaagtacctccgc 29912 Query: 508 ctcaaggccaccttcatatactacgacttcgacaagctcatcaccgccgcagaccccgac 567 |||||| |||||||||| |||| ||||||||||||||||||| ||||||| | ||||| Sbjct: 29913 ctcaagtccaccttcatgtacttcgacttcgacaagctcatctccgccgc---ctccgac 29969 Query: 568 gccaag---ccaccgcttcttgacctcgccaaccggctcttcgacagcttcgag 618 | | || || ||||| || |||||||||| ||| |||||||||||||||||| Sbjct: 29970 gaccagcgccccccgctgctcgacctcgccacccgcctcttcgacagcttcgag 30023 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 262 gagccggccaataacggctggtggctcaccgagttccccctgccggtgcccaagat 317 |||||||| || || || |||||||||||||||||||| |||||||||| ||||| Sbjct: 29525 gagccggcaaacaatgggtggtggctcaccgagttccctttgccggtgccaaagat 29580 Score = 46.1 bits (23), Expect = 0.22 Identities = 56/67 (83%) Strand = Plus / Plus Query: 639 caccaaggatgacaccgacataggatcctgctatgctgacacaaagctcatactgcagga 698 ||||||||| |||||| | || || |||| |||||| ||||| ||| |||| || ||||| Sbjct: 30044 caccaaggacgacacccagatcggctcctcctatgccgacaccaagatcatcctccagga 30103 Query: 699 ggtcatg 705 ||||||| Sbjct: 30104 ggtcatg 30110
>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0617C02 Length = 135605 Score = 196 bits (99), Expect = 1e-46 Identities = 246/294 (83%), Gaps = 12/294 (4%) Strand = Plus / Plus Query: 334 aacaatggcgagacagggacgcgatccttcgtgaagaacggcatctacatggcggacatc 393 |||||||||||||| |||| || | ||||||| ||||||||||||||| || |||||| Sbjct: 57494 aacaatggcgagacggggagccggacgttcgtgaggaacggcatctacatagccgacatc 57553 Query: 394 gggccgagcttcgcggcgcacgcctaccgggtgcgcagctctgccttcgacctgctggcg 453 |||||||||| |||||||||||| ||| || |||| ||| | || ||||||||||||||| Sbjct: 57554 gggccgagctacgcggcgcacgcgtacaggctgcggagcacggcgttcgacctgctggcg 57613 Query: 454 ctggaggacctgctcggcaaagaggcc------tccaactatgtcaacaagtacctccgc 507 |||||||||||||| ||||| | ||| ||||||| |||| ||||||||||||| Sbjct: 57614 ctggaggacctgctgggcaacaacgccgacagggccaactacgtcaccaagtacctccgc 57673 Query: 508 ctcaaggccaccttcatatactacgacttcgacaagctcatcaccgccgcagaccccgac 567 |||||| |||||||||| |||| ||||||||||||||||||| ||||||| | ||||| Sbjct: 57674 ctcaagtccaccttcatgtacttcgacttcgacaagctcatctccgccgc---ctccgac 57730 Query: 568 gccaag---ccaccgcttcttgacctcgccaaccggctcttcgacagcttcgag 618 | | || || ||||| || |||||||||| ||| |||||||||||||||||| Sbjct: 57731 gaccagcgccccccgctgctcgacctcgccacccgcctcttcgacagcttcgag 57784 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 262 gagccggccaataacggctggtggctcaccgagttccccctgccggtgcccaagat 317 |||||||| || || || |||||||||||||||||||| |||||||||| ||||| Sbjct: 57286 gagccggcaaacaatgggtggtggctcaccgagttccctttgccggtgccaaagat 57341 Score = 46.1 bits (23), Expect = 0.22 Identities = 56/67 (83%) Strand = Plus / Plus Query: 639 caccaaggatgacaccgacataggatcctgctatgctgacacaaagctcatactgcagga 698 ||||||||| |||||| | || || |||| |||||| ||||| ||| |||| || ||||| Sbjct: 57805 caccaaggacgacacccagatcggctcctcctatgccgacaccaagatcatcctccagga 57864 Query: 699 ggtcatg 705 ||||||| Sbjct: 57865 ggtcatg 57871
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Minus Query: 436 gccttcgacctgctggcgctgga 458 ||||||||||||||||||||||| Sbjct: 289596 gccttcgacctgctggcgctgga 289574
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Minus Query: 436 gccttcgacctgctggcgctgg 457 |||||||||||||||||||||| Sbjct: 354806 gccttcgacctgctggcgctgg 354785 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 aacgaggccgagaccaaggcc 119 ||||||||||||||||||||| Sbjct: 399426 aacgaggccgagaccaaggcc 399406
>gb|CP000459.1| Burkholderia cenocepacia HI2424 chromosome 2, complete genome Length = 2998664 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 ggcaggcgatcagcctgcctca 181 |||||||||||||||||||||| Sbjct: 1589464 ggcaggcgatcagcctgcctca 1589443
>gb|CP000379.1| Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence Length = 2788459 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Plus Query: 160 ggcaggcgatcagcctgcctca 181 |||||||||||||||||||||| Sbjct: 891660 ggcaggcgatcagcctgcctca 891681
>ref|XM_364711.1| Magnaporthe grisea 70-15 hypothetical protein (MG09556.4) partial mRNA Length = 510 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Plus Query: 101 cgaggccgagaccaaggccaag 122 |||||||||||||||||||||| Sbjct: 375 cgaggccgagaccaaggccaag 396
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Minus Query: 62 tccaggccgccgccgccgccac 83 |||||||||||||||||||||| Sbjct: 11073910 tccaggccgccgccgccgccac 11073889
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 44.1 bits (22), Expect = 0.85 Identities = 25/26 (96%) Strand = Plus / Minus Query: 69 cgccgccgccgccactagcggcggcg 94 ||||||||||||||||| |||||||| Sbjct: 25605527 cgccgccgccgccactaccggcggcg 25605502 Score = 42.1 bits (21), Expect = 3.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 66 ggccgccgccgccgccactagcggcggcg 94 |||||||||||||| ||| |||||||||| Sbjct: 5566106 ggccgccgccgccggcacaagcggcggcg 5566078
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.85 Identities = 25/26 (96%) Strand = Plus / Plus Query: 98 caacgaggccgagaccaaggccaagg 123 ||||||||||||| |||||||||||| Sbjct: 8455964 caacgaggccgaggccaaggccaagg 8455989
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0523F01 Length = 146419 Score = 44.1 bits (22), Expect = 0.85 Identities = 25/26 (96%) Strand = Plus / Minus Query: 69 cgccgccgccgccactagcggcggcg 94 ||||||||||||||||| |||||||| Sbjct: 123844 cgccgccgccgccactaccggcggcg 123819
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E02 Length = 154458 Score = 44.1 bits (22), Expect = 0.85 Identities = 25/26 (96%) Strand = Plus / Minus Query: 69 cgccgccgccgccactagcggcggcg 94 ||||||||||||||||| |||||||| Sbjct: 28972 cgccgccgccgccactaccggcggcg 28947
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Plus Query: 436 gccttcgacctgctggcgctgg 457 |||||||||||||||||||||| Sbjct: 366922 gccttcgacctgctggcgctgg 366943 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 aacgaggccgagaccaaggcc 119 ||||||||||||||||||||| Sbjct: 320628 aacgaggccgagaccaaggcc 320648
>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157771 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Plus Query: 62 tccaggccgccgccgccgccac 83 |||||||||||||||||||||| Sbjct: 112267 tccaggccgccgccgccgccac 112288
>emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 134082 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Plus Query: 62 tccaggccgccgccgccgccac 83 |||||||||||||||||||||| Sbjct: 31665 tccaggccgccgccgccgccac 31686
>gb|CP000454.1| Arthrobacter sp. FB24, complete genome Length = 4698945 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 acctgctggcgctggaggacc 463 ||||||||||||||||||||| Sbjct: 338484 acctgctggcgctggaggacc 338504 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 tacatggcggacatcgggccg 399 ||||||||||||||||||||| Sbjct: 2881589 tacatggcggacatcgggccg 2881609
>dbj|AK238307.1| Sus scrofa mRNA, clone:TCH010080B04, expressed in trachea Length = 2021 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 ggccgccgccgccgccactagcggc 90 |||||||||||||||||| |||||| Sbjct: 233 ggccgccgccgccgccaccagcggc 209
>ref|NM_001063639.1| Oryza sativa (japonica cultivar-group) Os06g0208700 (Os06g0208700) mRNA, complete cds Length = 1122 Score = 42.1 bits (21), Expect = 3.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 66 ggccgccgccgccgccactagcggcggcg 94 |||||||||||||| ||| |||||||||| Sbjct: 283 ggccgccgccgccggcacaagcggcggcg 255
>ref|NM_001062650.1| Oryza sativa (japonica cultivar-group) Os05g0528000 (Os05g0528000) mRNA, complete cds Length = 3489 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 gcgccaccgctgacggcgacg 253 ||||||||||||||||||||| Sbjct: 354 gcgccaccgctgacggcgacg 334
>ref|XM_001215492.1| Aspergillus terreus NIH2624 conserved hypothetical protein (ATEG_06314) mRNA, complete cds Length = 744 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 gacggcgacgaggagccggag 264 ||||||||||||||||||||| Sbjct: 661 gacggcgacgaggagccggag 681
>ref|XM_001099620.1| PREDICTED: Macaca mulatta similar to Porcine endogenous retrovirus A receptor 2 precursor (PERV-A receptor 2) (Protein GPR172B) (GPR172B), mRNA Length = 2323 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 caggcgatcagcctgcctcag 182 ||||||||||||||||||||| Sbjct: 364 caggcgatcagcctgcctcag 384
>gb|AC148873.2| Chlamydomonas reinhardtii clone cr-7K15, complete sequence Length = 42238 Score = 42.1 bits (21), Expect = 3.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 67 gccgccgccgccgccactagcggcggcgc 95 ||||||||||||||| | ||||||||||| Sbjct: 25543 gccgccgccgccgcctccagcggcggcgc 25515
>gb|DQ450375.1| Uncultured bacterium clone X33 16S ribosomal RNA gene, partial sequence Length = 559 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 429 cagctctgccttcgacctgct 449 ||||||||||||||||||||| Sbjct: 385 cagctctgccttcgacctgct 405
>gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E01, complete sequence Length = 180426 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 caggccgccgccgccgccact 84 ||||||||||||||||||||| Sbjct: 36093 caggccgccgccgccgccact 36073
>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11, complete sequence Length = 133352 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 gcgccaccgctgacggcgacg 253 ||||||||||||||||||||| Sbjct: 63511 gcgccaccgctgacggcgacg 63531
>gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015C02, complete sequence Length = 147407 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gccgccgccgccgccactagc 87 ||||||||||||||||||||| Sbjct: 96154 gccgccgccgccgccactagc 96174
>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052E20, complete sequence Length = 162434 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gccgccgccgccgccactagc 87 ||||||||||||||||||||| Sbjct: 137687 gccgccgccgccgccactagc 137707
>gb|AY669072.1| Oryza sativa dual-specificity phosphatase protein mRNA, complete cds Length = 1119 Score = 42.1 bits (21), Expect = 3.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 66 ggccgccgccgccgccactagcggcggcg 94 |||||||||||||| ||| |||||||||| Sbjct: 280 ggccgccgccgccggcacaagcggcggcg 252
>gb|AC148991.2| Mus musculus BAC clone RP23-52N2 from chromosome 19, complete sequence Length = 221043 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 183490 ccaaggccaaggccaagagtg 183470
>gb|AC132402.3| Mus musculus BAC clone RP23-404I24 from chromosome 19, complete sequence Length = 217490 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 70348 ccaaggccaaggccaagagtg 70328
>gb|AC098886.4| Mus musculus BAC clone RP23-122M21 from 4, complete sequence Length = 219825 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 113441 ccaggccgccgccgccgccac 113461
>dbj|AB097440.1| Oryza sativa (japonica cultivar-group) transposon AnacC2 DNA, complete sequence Length = 2042 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 70 gccgccgccgccactagcggcggcg 94 |||||||||||||||| |||||||| Sbjct: 786 gccgccgccgccactaccggcggcg 762
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 101 cgaggccgagaccaaggccaaggcc 125 ||||||||||||||| ||||||||| Sbjct: 251067 cgaggccgagaccaatgccaaggcc 251043
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 ggcctcggccttgccaccgcc 207 ||||||||||||||||||||| Sbjct: 1867687 ggcctcggccttgccaccgcc 1867667
>dbj|AK151850.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830040K08 product:similar to Mitsugumin 23 [Oryctolagus cuniculus], full insert sequence Length = 1907 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 1720 ccaaggccaaggccaagagtg 1700
>dbj|AK150779.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830015F08 product:hypothetical Leucine-rich region profile containing protein, full insert sequence Length = 1910 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 1723 ccaaggccaaggccaagagtg 1703
>dbj|AK153696.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630050O14 product:hypothetical protein, full insert sequence Length = 2476 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 200 ccaggccgccgccgccgccac 180
>dbj|AK152419.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830071C05 product:hypothetical Leucine-rich region profile containing protein, full insert sequence Length = 1907 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 1720 ccaaggccaaggccaagagtg 1700
>dbj|AK165990.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730027D14 product:similar to Mitsugumin 23 [Oryctolagus cuniculus], full insert sequence Length = 1884 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 1697 ccaaggccaaggccaagagtg 1677
>dbj|AK003502.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110006I15 product:inferred: mitsugumin 23 {Oryctolagus cuniculus}, full insert sequence Length = 411 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 224 ccaaggccaaggccaagagtg 204
>dbj|AK049148.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330007I17 product:similar to MITSUGUMIN 23 [Oryctolagus cuniculus], full insert sequence Length = 1937 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 1750 ccaaggccaaggccaagagtg 1730
>emb|CR385077.11| Zebrafish DNA sequence from clone CH211-262M14 in linkage group 15, complete sequence Length = 105764 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 797 atgtaatgtacatgtacattt 817 ||||||||||||||||||||| Sbjct: 19646 atgtaatgtacatgtacattt 19666
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 ttccaggccgccgccgccgcc 81 ||||||||||||||||||||| Sbjct: 19166549 ttccaggccgccgccgccgcc 19166529 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 20084685 ccaggccgccgccgccgccac 20084665
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 caggccgccgccgccgccact 84 ||||||||||||||||||||| Sbjct: 15643989 caggccgccgccgccgccact 15643969 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gccgccgccgccgccactagc 87 ||||||||||||||||||||| Sbjct: 23033674 gccgccgccgccgccactagc 23033694 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 gcgccaccgctgacggcgacg 253 ||||||||||||||||||||| Sbjct: 26038750 gcgccaccgctgacggcgacg 26038770
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 70 gccgccgccgccactagcggcggcg 94 |||||||||||||||| |||||||| Sbjct: 23057396 gccgccgccgccactaccggcggcg 23057420
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 70 gccgccgccgccactagcggcggcg 94 |||||||||||||||| |||||||| Sbjct: 5865110 gccgccgccgccactaccggcggcg 5865134 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 cttccaggccgccgccgccgc 80 ||||||||||||||||||||| Sbjct: 8891497 cttccaggccgccgccgccgc 8891477
>dbj|AB221691.1| Mus musculus adult male liver DNA, clone:V02Y028A13 Length = 1350 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 511 ccaggccgccgccgccgccac 491
>emb|CR956354.1| Wallaby DNA sequence from clone GRWB-143H14, complete sequence Length = 120769 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 gccgagaccaaggccaaggccaaga 129 |||||| |||||||||||||||||| Sbjct: 81567 gccgaggccaaggccaaggccaaga 81591
>ref|XM_680141.1| PREDICTED: Danio rerio similar to kinesin family member 5B (LOC557136), mRNA Length = 1443 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 cttcaacgaggccgagaccaa 115 ||||||||||||||||||||| Sbjct: 165 cttcaacgaggccgagaccaa 185
>emb|AL139814.13| Human DNA sequence from clone RP11-211E5 on chromosome 10p12.1-12.33 Contains part of the CACNB2 gene for calcium channel voltage-dependent beta 2 subunit, complete sequence Length = 119884 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 161 gcaggcgatcagcctgcctcagtct 185 |||||||||| |||||||||||||| Sbjct: 20047 gcaggcgatccgcctgcctcagtct 20071
>emb|AL021155.1|HS934G17 Human DNA sequence from clone RP5-934G17 on chromosome 1p36.21 Contains the 3' end of the CLCN6 gene for chloride channel 6, two novel genes, the NPPA gene for natriuretic peptide precursor A, the NPPB gene for natriuretic peptide precursor B, a pseudogene similar to part of SET binding factor 1 (SBF1) and the 3' end of a novel gene, complete sequence Length = 107603 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 caggcgatcagcctgcctcag 182 ||||||||||||||||||||| Sbjct: 93102 caggcgatcagcctgcctcag 93122
>gb|BC023901.1| Mus musculus transmembrane protein 109, mRNA (cDNA clone MGC:38146 IMAGE:5321274), complete cds Length = 1904 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 1695 ccaaggccaaggccaagagtg 1675
>ref|NM_134142.1| Mus musculus transmembrane protein 109 (Tmem109), mRNA gb|BC022997.1| Mus musculus transmembrane protein 109, mRNA (cDNA clone MGC:38921 IMAGE:5362560), complete cds Length = 1943 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 1739 ccaaggccaaggccaagagtg 1719
>gb|BC025815.1| Mus musculus transmembrane protein 109, mRNA (cDNA clone MGC:37801 IMAGE:5097938), complete cds Length = 1932 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 1729 ccaaggccaaggccaagagtg 1709
>gb|BC025033.1| Mus musculus transmembrane protein 109, mRNA (cDNA clone MGC:36969 IMAGE:4947460), complete cds Length = 1913 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 1707 ccaaggccaaggccaagagtg 1687
>emb|X57482.1|MMOCT6R M.musculus Oct-6 mRNA for octamer binding protein Length = 1504 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 530 ccaggccgccgccgccgccac 510
>emb|X56959.1|MDSCIP Mouse SCIP mRNA for a POU-domain transcription factor Length = 1516 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 546 ccaggccgccgccgccgccac 526
>ref|NM_011141.1| Mus musculus POU domain, class 3, transcription factor 1 (Pou3f1), mRNA emb|X54628.1|MMOCT6GR M. musculus oct6 gene for the octamer binding factor oct6 Length = 1517 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 565 ccaggccgccgccgccgccac 545
>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence Length = 687501 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 gccgagaccaaggccaaggcc 125 ||||||||||||||||||||| Sbjct: 259559 gccgagaccaaggccaaggcc 259539
>dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0469E09 Length = 146081 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 cttccaggccgccgccgccgc 80 ||||||||||||||||||||| Sbjct: 127525 cttccaggccgccgccgccgc 127505
>gb|AC139452.4| Homo sapiens 3 BAC RP11-301L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164897 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 caggcgatcagcctgcctcag 182 ||||||||||||||||||||| Sbjct: 148089 caggcgatcagcctgcctcag 148069
>dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1067_B01 Length = 100525 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 70 gccgccgccgccactagcggcggcg 94 |||||||||||||||| |||||||| Sbjct: 81793 gccgccgccgccactaccggcggcg 81817
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 42.1 bits (21), Expect = 3.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 388 gacatcgggccgagcttcgcggcgcacgc 416 |||||||||||||||| | |||||||||| Sbjct: 33937 gacatcgggccgagctacccggcgcacgc 33909
>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_D09 Length = 138615 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 70 gccgccgccgccactagcggcggcg 94 |||||||||||||||| |||||||| Sbjct: 24434 gccgccgccgccactaccggcggcg 24458
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 42.1 bits (21), Expect = 3.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 70 gccgccgccgccactagcggcggcg 94 |||||||||||||||| |||||||| Sbjct: 68851 gccgccgccgccactaccggcggcg 68875
>dbj|AK196648.1| Mus musculus cDNA, clone:Y1G0122H17, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000038128, based on BLAT search Length = 398 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 ccaaggccaaggccaagagtg 132 ||||||||||||||||||||| Sbjct: 200 ccaaggccaaggccaagagtg 180
>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664C05 Length = 165354 Score = 42.1 bits (21), Expect = 3.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 66 ggccgccgccgccgccactagcggcggcg 94 |||||||||||||| ||| |||||||||| Sbjct: 113014 ggccgccgccgccggcacaagcggcggcg 112986
>dbj|AK173208.1| Mus musculus premature mRNA for mKIAA1585 protein Length = 4747 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 233 ccaggccgccgccgccgccac 213
>dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1188_F05 Length = 117045 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 31231 ccaggccgccgccgccgccac 31211
>dbj|AP005521.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0477F03 Length = 176120 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 156536 ccaggccgccgccgccgccac 156516
>dbj|AK120905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031D09, full insert sequence Length = 3489 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 gcgccaccgctgacggcgacg 253 ||||||||||||||||||||| Sbjct: 354 gcgccaccgctgacggcgacg 334
>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04 Length = 163579 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 ttccaggccgccgccgccgcc 81 ||||||||||||||||||||| Sbjct: 88914 ttccaggccgccgccgccgcc 88894
>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1470_H06 Length = 62794 Score = 42.1 bits (21), Expect = 3.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 388 gacatcgggccgagcttcgcggcgcacgc 416 |||||||||||||||| | |||||||||| Sbjct: 42704 gacatcgggccgagctacccggcgcacgc 42676
>dbj|AK065860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043L18, full insert sequence Length = 3738 Score = 42.1 bits (21), Expect = 3.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 66 ggccgccgccgccgccactagcggcggcg 94 |||||||||||||| ||| |||||||||| Sbjct: 284 ggccgccgccgccggcacaagcggcggcg 256
>ref|XM_445808.1| Candida glabrata CBS138, CAGL0E02739g partial mRNA Length = 1032 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 gccgagaccaaggccaaggcc 125 ||||||||||||||||||||| Sbjct: 259 gccgagaccaaggccaaggcc 279
>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence Length = 53591 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 28689 ccaggccgccgccgccgccac 28709
>emb|AL606907.9| Mouse DNA sequence from clone RP23-230F2 on chromosome 4, complete sequence Length = 208265 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 101884 ccaggccgccgccgccgccac 101904
>gb|M63712.1|RATTST1POU Rat POU domain protein (Tst-1) mRNA, 3' end Length = 1549 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 415 ccaggccgccgccgccgccac 395
>ref|NM_138838.1| Rattus norvegicus POU domain, class 3, transcription factor 1 (Pou3f1), mRNA gb|M72711.1|RATSCIP Rat transcriptional repressor of myelin-specific genes (SCIP) mRNA, complete cds Length = 2977 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 554 ccaggccgccgccgccgccac 534
>gb|M88302.1|MUSPOUDOMD Mouse scip POU-domain protein, complete cds Length = 2766 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccaggccgccgccgccgccac 83 ||||||||||||||||||||| Sbjct: 1211 ccaggccgccgccgccgccac 1191 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 131,110,911 Number of extensions: 8062316 Number of successful extensions: 344922 Number of sequences better than 10.0: 87 Number of HSP's gapped: 344913 Number of HSP's successfully gapped: 125 Length of query: 896 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 873 Effective length of database: 18,503,978,556 Effective search space: 16153973279388 Effective search space used: 16153973279388 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)