ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf4a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P79385:MFGM_PIG Lactadherin - Sus scrofa (Pig) 33 1.4
2P18832:COL7_CAEEL Cuticle collagen 7 precursor - Caenorhabditis ... 32 3.1
3Q95114:MFGM_BOVIN Lactadherin precursor - Bos taurus (Bovine) 32 4.0
4P50465:END8_ECOLI Endonuclease VIII - Escherichia coli 30 8.9
5Q8FJU5:END8_ECOL6 Endonuclease VIII - Escherichia coli O6 30 8.9
6Q8X9C6:END8_ECO57 Endonuclease VIII - Escherichia coli O157:H7 30 8.9
7P32057:WCAI_ECOLI Putative colanic acid biosynthesis glycosyl tr... 30 8.9

>P79385:MFGM_PIG Lactadherin - Sus scrofa (Pig)|
          Length = 409
 Score = 33.1 bits (74), Expect = 1.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 166 KVTGECIKHSTGQGHPVKLVPYNPAYQDESVLWTESRDVG 285
           +VTG   + +   GH   +  Y  AY D+ V WTE RD G
Sbjct: 320 RVTGIITQGARDFGHIQYVAAYKVAYSDDGVSWTEYRDQG 359



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>P18832:COL7_CAEEL Cuticle collagen 7 precursor - Caenorhabditis elegans|
          Length = 316

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +3

Query: 201 PGPPREAGAV----QPGVPGRVGAVDGEPRRGQGLP 296
           PGPP  AG+     Q G PG  G+     +RG+GLP
Sbjct: 171 PGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLP 206



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>Q95114:MFGM_BOVIN Lactadherin precursor - Bos taurus (Bovine)|
          Length = 427

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 166 KVTGECIKHSTGQGHPVKLVPYNPAYQDESVLWTESRDVG 285
           +VTG   + +   GH   +  Y  AY D+ V WTE +D G
Sbjct: 338 RVTGIITQGARDFGHIQYVAAYRVAYGDDGVTWTEYKDPG 377



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>P50465:END8_ECOLI Endonuclease VIII - Escherichia coli|
          Length = 263

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 785 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPLLPRSNAD 660
           RV + + Q  + T+ L+ +SD+ ++ P     HP L R   D
Sbjct: 88  RVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 129



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>Q8FJU5:END8_ECOL6 Endonuclease VIII - Escherichia coli O6|
          Length = 263

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 785 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPLLPRSNAD 660
           RV + + Q  + T+ L+ +SD+ ++ P     HP L R   D
Sbjct: 88  RVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 129



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>Q8X9C6:END8_ECO57 Endonuclease VIII - Escherichia coli O157:H7|
          Length = 263

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 785 RVAQYRSQYQENTVELHQSSDLRIMVPPHSLQHPLLPRSNAD 660
           RV + + Q  + T+ L+ +SD+ ++ P     HP L R   D
Sbjct: 88  RVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPD 129



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>P32057:WCAI_ECOLI Putative colanic acid biosynthesis glycosyl transferase wcaI -|
           Escherichia coli
          Length = 407

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = +1

Query: 145 PAFAIVNKVTGECIKHSTGQGHPVKLV---PYNPAYQ--DESVLWTESRDVGKG--FRC 300
           P    + K TGE ++    QGH V+++   PY P +Q  +    W   R+ G    +RC
Sbjct: 12  PELTGIGKYTGEMVEWLAAQGHEVRVITAPPYYPQWQVGENYSAWRYKREEGAATVWRC 70


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 117,006,010
Number of extensions: 2380270
Number of successful extensions: 9560
Number of sequences better than 10.0: 7
Number of HSP's gapped: 9540
Number of HSP's successfully gapped: 7
Length of query: 277
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 165
Effective length of database: 69,965,399
Effective search space: 11544290835
Effective search space used: 11544290835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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