>ref|NM_001068036.1| Oryza sativa (japonica cultivar-group) Os08g0305300 (Os08g0305300)
mRNA, complete cds
Length = 4000
Score = 147 bits (74), Expect = 4e-31
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 272 gtcagcacagtccaaagtcccatcagatcccaacatatggcttcagatgcgtgagaactt 331
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 423 gtcagcacagtccaaagtgccatcagatcctaacatatggtttcagatgcgtgagaacta 482
Query: 332 tgagaaaatgattctggcagatcatgacttttgtgaaaagcatgagatcgagtatatttt 391
||| || || || || || ||||||||||| | |||||| | |||||| || ||| || |
Sbjct: 483 tgaaaagataatccttgctgatcatgacttctctgaaaaacgtgagatagaatatcttct 542
Query: 392 gtggcagttgcactacaaaagaatcgagga 421
|||||||||||||||||||||||| |||||
Sbjct: 543 gtggcagttgcactacaaaagaattgagga 572
Score = 147 bits (74), Expect = 4e-31
Identities = 230/282 (81%)
Strand = Plus / Plus
Query: 1321 ttgcaatccttatattcacagtgcacaacgtgaaaaaggaatcagataaccagtcatatg 1380
|||| ||||||||||||||||||||||| | || || || ||||||| || |||||||
Sbjct: 1463 ttgctatccttatattcacagtgcacaatgcaaacaaagacgcagataatcaatcatatg 1522
Query: 1381 ctgaaattgtccaacgcagggtacttcttcaaaatgcatttacagctgcttttgagtttg 1440
|||||||||| |||||||| || |||||||||||||||||| | || || ||||| ||||
Sbjct: 1523 ctgaaattgtgcaacgcagagttcttcttcaaaatgcatttgctgcagcctttgaatttg 1582
Query: 1441 ttggacatattctcaaaaggtgctcagagcttcgtgacattgcatcaagtttctatcttc 1500
||||| | |||||||||| ||| ||||||||| ||| ||||||||||| |||| | |
Sbjct: 1583 ttggataccttctcaaaagatgcgcagagcttcatgatgttgcatcaagtatctacttgc 1642
Query: 1501 cagccattgtggtctacatcgaatggctcgcatgccaaccggagttagctgctgattcgg 1560
|||| ||| |||||| ||| |||||||| || ||||| || || || | ||| ||| |
Sbjct: 1643 cagctattttggtcttcattgaatggctggcgtgccatccagattttgtggctagttctg 1702
Query: 1561 agatggacgagaagcatgcgaatgctcgatctttcttctgga 1602
||||||| || ||||| || |||| |||||||||||||||
Sbjct: 1703 agatggatgaaaagcaagccgatgcaagatctttcttctgga 1744
Score = 107 bits (54), Expect = 3e-19
Identities = 216/270 (80%)
Strand = Plus / Plus
Query: 1656 gatggtgatgatgatgaggcttgcttttttgatatgggcgtgtatgaagagggtgaaact 1715
||||||||| ||||||| ||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 1798 gatggtgataatgatgaaacttgcttttttgacatgggcacatatgaggagggtgaaact 1857
Query: 1716 ggcaatcgacttgcattgtgggaagattatgaattaaggggattttcccccttggtgcct 1775
|| || | ||||| |||||||| ||| ||| ||||| || ||||| || ||||| |||
Sbjct: 1858 gggaacaggcttgcgttgtgggaggatgttgagttaagagggttttcgcctttggtacct 1917
Query: 1776 gcacatattatcttggatttctcaagcaagcacacatttggaagtgatggtagcactaag 1835
|| || ||||||||| ||||| | |||||| |||||||||||||| | || |||
Sbjct: 1918 gctcaaggtatcttggacttctccaccaagcaaggttttggaagtgatggaggtaccaag 1977
Query: 1836 gagaagaaagcacgggcacaacggatactttctgcagggaaggctctactcaattttgtc 1895
||||| |||||||| | | || |||| ||| ||||||||||||| || | ||||| ||
Sbjct: 1978 gagaaaaaagcacgtgtagaaaggattcttgctgcagggaaggcgctgttaaatttcgtt 2037
Query: 1896 cagattgatcaactgagaatattttttgat 1925
|| |||||||| ||| |||||| |||||||
Sbjct: 2038 caaattgatcagctgcgaatatattttgat 2067
Score = 63.9 bits (32), Expect = 4e-06
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 1152 tttgttaggctcaatggaattcttttcacaaagaccagtttggaaacatttg 1203
|||||| | |||||||||||||||||||||| ||| || |||||||||||||
Sbjct: 1294 tttgttcgcctcaatggaattcttttcacaaggacaagcttggaaacatttg 1345
Score = 61.9 bits (31), Expect = 2e-05
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 759 cgtgaatatgctgcggcttctaattactacaaggaggcagtttcaatctgcccttccagc 818
|||||||||||||| || |||| ||||||||||| |||| ||| | |||||||| |
Sbjct: 889 cgtgaatatgctgcagcctctatctactacaaggaagcagcttcgctgtgcccttcgaat 948
Query: 819 ggcaatccacaccatcagcttgcaata 845
||||| ||||| |||||||||||||||
Sbjct: 949 ggcaacccacatcatcagcttgcaata 975
Score = 54.0 bits (27), Expect = 0.004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 2112 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 2166
||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| ||||
Sbjct: 2254 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 2308
Score = 48.1 bits (24), Expect = 0.25
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 2831 tgtatcaaagaagaatcctgtaagtcgtccatcaaggcccgttggtcctcctccaggatt 2890
|||||||||||| |||||||| || ||||| ||| | ||||| ||||||||||||||
Sbjct: 2946 tgtatcaaagaaaaatcctgtcagccgtcctggaagacatgttggccctcctccaggatt 3005
Query: 2891 taac 2894
||||
Sbjct: 3006 taac 3009
Score = 46.1 bits (23), Expect = 0.97
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 3043 ccagcagtgcattcaccactcccttccctttccctgggaaaca 3085
|||||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 3158 ccagcagtactttcaccactccctttccttttcctggaaaaca 3200
Score = 44.1 bits (22), Expect = 3.8
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 3386 tttcttttggagaatggtggtcttggaagcatagcaagtgct 3427
||||||||||| ||| | |||||||||||||| ||||||||
Sbjct: 3478 tttcttttggaagatgcttgtcttggaagcataacaagtgct 3519
>gb|AY360391.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0023H09,
complete sequence
Length = 178320
Score = 147 bits (74), Expect = 4e-31
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 272 gtcagcacagtccaaagtcccatcagatcccaacatatggcttcagatgcgtgagaactt 331
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 16775 gtcagcacagtccaaagtgccatcagatcctaacatatggtttcagatgcgtgagaacta 16834
Query: 332 tgagaaaatgattctggcagatcatgacttttgtgaaaagcatgagatcgagtatatttt 391
||| || || || || || ||||||||||| | |||||| | |||||| || ||| || |
Sbjct: 16835 tgaaaagataatccttgctgatcatgacttctctgaaaaacgtgagatagaatatcttct 16894
Query: 392 gtggcagttgcactacaaaagaatcgagga 421
|||||||||||||||||||||||| |||||
Sbjct: 16895 gtggcagttgcactacaaaagaattgagga 16924
Score = 147 bits (74), Expect = 4e-31
Identities = 230/282 (81%)
Strand = Plus / Plus
Query: 1321 ttgcaatccttatattcacagtgcacaacgtgaaaaaggaatcagataaccagtcatatg 1380
|||| ||||||||||||||||||||||| | || || || ||||||| || |||||||
Sbjct: 19234 ttgctatccttatattcacagtgcacaatgcaaacaaagacgcagataatcaatcatatg 19293
Query: 1381 ctgaaattgtccaacgcagggtacttcttcaaaatgcatttacagctgcttttgagtttg 1440
|||||||||| |||||||| || |||||||||||||||||| | || || ||||| ||||
Sbjct: 19294 ctgaaattgtgcaacgcagagttcttcttcaaaatgcatttgctgcagcctttgaatttg 19353
Query: 1441 ttggacatattctcaaaaggtgctcagagcttcgtgacattgcatcaagtttctatcttc 1500
||||| | |||||||||| ||| ||||||||| ||| ||||||||||| |||| | |
Sbjct: 19354 ttggataccttctcaaaagatgcgcagagcttcatgatgttgcatcaagtatctacttgc 19413
Query: 1501 cagccattgtggtctacatcgaatggctcgcatgccaaccggagttagctgctgattcgg 1560
|||| ||| |||||| ||| |||||||| || ||||| || || || | ||| ||| |
Sbjct: 19414 cagctattttggtcttcattgaatggctggcgtgccatccagattttgtggctagttctg 19473
Query: 1561 agatggacgagaagcatgcgaatgctcgatctttcttctgga 1602
||||||| || ||||| || |||| |||||||||||||||
Sbjct: 19474 agatggatgaaaagcaagccgatgcaagatctttcttctgga 19515
Score = 107 bits (54), Expect = 3e-19
Identities = 216/270 (80%)
Strand = Plus / Plus
Query: 1656 gatggtgatgatgatgaggcttgcttttttgatatgggcgtgtatgaagagggtgaaact 1715
||||||||| ||||||| ||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 19569 gatggtgataatgatgaaacttgcttttttgacatgggcacatatgaggagggtgaaact 19628
Query: 1716 ggcaatcgacttgcattgtgggaagattatgaattaaggggattttcccccttggtgcct 1775
|| || | ||||| |||||||| ||| ||| ||||| || ||||| || ||||| |||
Sbjct: 19629 gggaacaggcttgcgttgtgggaggatgttgagttaagagggttttcgcctttggtacct 19688
Query: 1776 gcacatattatcttggatttctcaagcaagcacacatttggaagtgatggtagcactaag 1835
|| || ||||||||| ||||| | |||||| |||||||||||||| | || |||
Sbjct: 19689 gctcaaggtatcttggacttctccaccaagcaaggttttggaagtgatggaggtaccaag 19748
Query: 1836 gagaagaaagcacgggcacaacggatactttctgcagggaaggctctactcaattttgtc 1895
||||| |||||||| | | || |||| ||| ||||||||||||| || | ||||| ||
Sbjct: 19749 gagaaaaaagcacgtgtagaaaggattcttgctgcagggaaggcgctgttaaatttcgtt 19808
Query: 1896 cagattgatcaactgagaatattttttgat 1925
|| |||||||| ||| |||||| |||||||
Sbjct: 19809 caaattgatcagctgcgaatatattttgat 19838
Score = 54.0 bits (27), Expect = 0.004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 2112 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 2166
||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| ||||
Sbjct: 20025 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 20079
Score = 48.1 bits (24), Expect = 0.25
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 2831 tgtatcaaagaagaatcctgtaagtcgtccatcaaggcccgttggtcctcctccaggatt 2890
|||||||||||| |||||||| || ||||| ||| | ||||| ||||||||||||||
Sbjct: 20717 tgtatcaaagaaaaatcctgtcagccgtcctggaagacatgttggccctcctccaggatt 20776
Query: 2891 taac 2894
||||
Sbjct: 20777 taac 20780
Score = 46.1 bits (23), Expect = 0.97
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1152 tttgttaggctcaatggaattcttttcacaa 1182
|||||| | ||||||||||||||||||||||
Sbjct: 18983 tttgttcgcctcaatggaattcttttcacaa 19013
Score = 46.1 bits (23), Expect = 0.97
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 3043 ccagcagtgcattcaccactcccttccctttccctgggaaaca 3085
|||||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 20929 ccagcagtactttcaccactccctttccttttcctggaaaaca 20971
Score = 44.1 bits (22), Expect = 3.8
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 759 cgtgaatatgctgcggcttctaattactacaaggaggcagtttcaatctgcccttccagc 818
|||||||||||||| || |||| ||||||||||| |||| ||| | |||||||| |
Sbjct: 17241 cgtgaatatgctgcagcctctatctactacaaggaagcagcttcgctgtgcccttcgaat 17300
Query: 819 ggcaatccacaccatcag 836
||||| ||||| ||||||
Sbjct: 17301 ggcaacccacatcatcag 17318
Score = 44.1 bits (22), Expect = 3.8
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 3386 tttcttttggagaatggtggtcttggaagcatagcaagtgct 3427
||||||||||| ||| | |||||||||||||| ||||||||
Sbjct: 21375 tttcttttggaagatgcttgtcttggaagcataacaagtgct 21416
>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12,
complete sequence
Length = 187972
Score = 147 bits (74), Expect = 4e-31
Identities = 230/282 (81%)
Strand = Plus / Minus
Query: 1321 ttgcaatccttatattcacagtgcacaacgtgaaaaaggaatcagataaccagtcatatg 1380
|||| ||||||||||||||||||||||| | || || || ||||||| || |||||||
Sbjct: 57701 ttgctatccttatattcacagtgcacaatgcaaacaaagacgcagataatcaatcatatg 57642
Query: 1381 ctgaaattgtccaacgcagggtacttcttcaaaatgcatttacagctgcttttgagtttg 1440
|||||||||| |||||||| || |||||||||||||||||| | || || ||||| ||||
Sbjct: 57641 ctgaaattgtgcaacgcagagttcttcttcaaaatgcatttgctgcagcctttgaatttg 57582
Query: 1441 ttggacatattctcaaaaggtgctcagagcttcgtgacattgcatcaagtttctatcttc 1500
||||| | |||||||||| ||| ||||||||| ||| ||||||||||| |||| | |
Sbjct: 57581 ttggataccttctcaaaagatgcgcagagcttcatgatgttgcatcaagtatctacttgc 57522
Query: 1501 cagccattgtggtctacatcgaatggctcgcatgccaaccggagttagctgctgattcgg 1560
|||| ||| |||||| ||| |||||||| || ||||| || || || | ||| ||| |
Sbjct: 57521 cagctattttggtcttcattgaatggctggcgtgccatccagattttgtggctagttctg 57462
Query: 1561 agatggacgagaagcatgcgaatgctcgatctttcttctgga 1602
||||||| || ||||| || |||| |||||||||||||||
Sbjct: 57461 agatggatgaaaagcaagccgatgcaagatctttcttctgga 57420
Score = 147 bits (74), Expect = 4e-31
Identities = 131/150 (87%)
Strand = Plus / Minus
Query: 272 gtcagcacagtccaaagtcccatcagatcccaacatatggcttcagatgcgtgagaactt 331
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 60160 gtcagcacagtccaaagtgccatcagatcctaacatatggtttcagatgcgtgagaacta 60101
Query: 332 tgagaaaatgattctggcagatcatgacttttgtgaaaagcatgagatcgagtatatttt 391
||| || || || || || ||||||||||| | |||||| | |||||| || ||| || |
Sbjct: 60100 tgaaaagataatccttgctgatcatgacttctctgaaaaacgtgagatagaatatcttct 60041
Query: 392 gtggcagttgcactacaaaagaatcgagga 421
|||||||||||||||||||||||| |||||
Sbjct: 60040 gtggcagttgcactacaaaagaattgagga 60011
Score = 107 bits (54), Expect = 3e-19
Identities = 216/270 (80%)
Strand = Plus / Minus
Query: 1656 gatggtgatgatgatgaggcttgcttttttgatatgggcgtgtatgaagagggtgaaact 1715
||||||||| ||||||| ||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 57366 gatggtgataatgatgaaacttgcttttttgacatgggcacatatgaggagggtgaaact 57307
Query: 1716 ggcaatcgacttgcattgtgggaagattatgaattaaggggattttcccccttggtgcct 1775
|| || | ||||| |||||||| ||| ||| ||||| || ||||| || ||||| |||
Sbjct: 57306 gggaacaggcttgcgttgtgggaggatgttgagttaagagggttttcgcctttggtacct 57247
Query: 1776 gcacatattatcttggatttctcaagcaagcacacatttggaagtgatggtagcactaag 1835
|| || ||||||||| ||||| | |||||| |||||||||||||| | || |||
Sbjct: 57246 gctcaaggtatcttggacttctccaccaagcaaggttttggaagtgatggaggtaccaag 57187
Query: 1836 gagaagaaagcacgggcacaacggatactttctgcagggaaggctctactcaattttgtc 1895
||||| |||||||| | | || |||| ||| ||||||||||||| || | ||||| ||
Sbjct: 57186 gagaaaaaagcacgtgtagaaaggattcttgctgcagggaaggcgctgttaaatttcgtt 57127
Query: 1896 cagattgatcaactgagaatattttttgat 1925
|| |||||||| ||| |||||| |||||||
Sbjct: 57126 caaattgatcagctgcgaatatattttgat 57097
Score = 54.0 bits (27), Expect = 0.004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 2112 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 2166
||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| ||||
Sbjct: 56910 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 56856
Score = 48.1 bits (24), Expect = 0.25
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 2831 tgtatcaaagaagaatcctgtaagtcgtccatcaaggcccgttggtcctcctccaggatt 2890
|||||||||||| |||||||| || ||||| ||| | ||||| ||||||||||||||
Sbjct: 56218 tgtatcaaagaaaaatcctgtcagccgtcctggaagacatgttggccctcctccaggatt 56159
Query: 2891 taac 2894
||||
Sbjct: 56158 taac 56155
Score = 46.1 bits (23), Expect = 0.97
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 3043 ccagcagtgcattcaccactcccttccctttccctgggaaaca 3085
|||||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 56006 ccagcagtactttcaccactccctttccttttcctggaaaaca 55964
Score = 46.1 bits (23), Expect = 0.97
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1152 tttgttaggctcaatggaattcttttcacaa 1182
|||||| | ||||||||||||||||||||||
Sbjct: 57952 tttgttcgcctcaatggaattcttttcacaa 57922
Score = 44.1 bits (22), Expect = 3.8
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 3386 tttcttttggagaatggtggtcttggaagcatagcaagtgct 3427
||||||||||| ||| | |||||||||||||| ||||||||
Sbjct: 55560 tttcttttggaagatgcttgtcttggaagcataacaagtgct 55519
Score = 44.1 bits (22), Expect = 3.8
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 759 cgtgaatatgctgcggcttctaattactacaaggaggcagtttcaatctgcccttccagc 818
|||||||||||||| || |||| ||||||||||| |||| ||| | |||||||| |
Sbjct: 59694 cgtgaatatgctgcagcctctatctactacaaggaagcagcttcgctgtgcccttcgaat 59635
Query: 819 ggcaatccacaccatcag 836
||||| ||||| ||||||
Sbjct: 59634 ggcaacccacatcatcag 59617
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
Length = 28434780
Score = 147 bits (74), Expect = 4e-31
Identities = 230/282 (81%)
Strand = Plus / Minus
Query: 1321 ttgcaatccttatattcacagtgcacaacgtgaaaaaggaatcagataaccagtcatatg 1380
|||| ||||||||||||||||||||||| | || || || ||||||| || |||||||
Sbjct: 12720522 ttgctatccttatattcacagtgcacaatgcaaacaaagacgcagataatcaatcatatg 12720463
Query: 1381 ctgaaattgtccaacgcagggtacttcttcaaaatgcatttacagctgcttttgagtttg 1440
|||||||||| |||||||| || |||||||||||||||||| | || || ||||| ||||
Sbjct: 12720462 ctgaaattgtgcaacgcagagttcttcttcaaaatgcatttgctgcagcctttgaatttg 12720403
Query: 1441 ttggacatattctcaaaaggtgctcagagcttcgtgacattgcatcaagtttctatcttc 1500
||||| | |||||||||| ||| ||||||||| ||| ||||||||||| |||| | |
Sbjct: 12720402 ttggataccttctcaaaagatgcgcagagcttcatgatgttgcatcaagtatctacttgc 12720343
Query: 1501 cagccattgtggtctacatcgaatggctcgcatgccaaccggagttagctgctgattcgg 1560
|||| ||| |||||| ||| |||||||| || ||||| || || || | ||| ||| |
Sbjct: 12720342 cagctattttggtcttcattgaatggctggcgtgccatccagattttgtggctagttctg 12720283
Query: 1561 agatggacgagaagcatgcgaatgctcgatctttcttctgga 1602
||||||| || ||||| || |||| |||||||||||||||
Sbjct: 12720282 agatggatgaaaagcaagccgatgcaagatctttcttctgga 12720241
Score = 147 bits (74), Expect = 4e-31
Identities = 131/150 (87%)
Strand = Plus / Minus
Query: 272 gtcagcacagtccaaagtcccatcagatcccaacatatggcttcagatgcgtgagaactt 331
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 12722981 gtcagcacagtccaaagtgccatcagatcctaacatatggtttcagatgcgtgagaacta 12722922
Query: 332 tgagaaaatgattctggcagatcatgacttttgtgaaaagcatgagatcgagtatatttt 391
||| || || || || || ||||||||||| | |||||| | |||||| || ||| || |
Sbjct: 12722921 tgaaaagataatccttgctgatcatgacttctctgaaaaacgtgagatagaatatcttct 12722862
Query: 392 gtggcagttgcactacaaaagaatcgagga 421
|||||||||||||||||||||||| |||||
Sbjct: 12722861 gtggcagttgcactacaaaagaattgagga 12722832
Score = 107 bits (54), Expect = 3e-19
Identities = 216/270 (80%)
Strand = Plus / Minus
Query: 1656 gatggtgatgatgatgaggcttgcttttttgatatgggcgtgtatgaagagggtgaaact 1715
||||||||| ||||||| ||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 12720187 gatggtgataatgatgaaacttgcttttttgacatgggcacatatgaggagggtgaaact 12720128
Query: 1716 ggcaatcgacttgcattgtgggaagattatgaattaaggggattttcccccttggtgcct 1775
|| || | ||||| |||||||| ||| ||| ||||| || ||||| || ||||| |||
Sbjct: 12720127 gggaacaggcttgcgttgtgggaggatgttgagttaagagggttttcgcctttggtacct 12720068
Query: 1776 gcacatattatcttggatttctcaagcaagcacacatttggaagtgatggtagcactaag 1835
|| || ||||||||| ||||| | |||||| |||||||||||||| | || |||
Sbjct: 12720067 gctcaaggtatcttggacttctccaccaagcaaggttttggaagtgatggaggtaccaag 12720008
Query: 1836 gagaagaaagcacgggcacaacggatactttctgcagggaaggctctactcaattttgtc 1895
||||| |||||||| | | || |||| ||| ||||||||||||| || | ||||| ||
Sbjct: 12720007 gagaaaaaagcacgtgtagaaaggattcttgctgcagggaaggcgctgttaaatttcgtt 12719948
Query: 1896 cagattgatcaactgagaatattttttgat 1925
|| |||||||| ||| |||||| |||||||
Sbjct: 12719947 caaattgatcagctgcgaatatattttgat 12719918
Score = 54.0 bits (27), Expect = 0.004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 2112 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 2166
||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| ||||
Sbjct: 12719731 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 12719677
Score = 48.1 bits (24), Expect = 0.25
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 2831 tgtatcaaagaagaatcctgtaagtcgtccatcaaggcccgttggtcctcctccaggatt 2890
|||||||||||| |||||||| || ||||| ||| | ||||| ||||||||||||||
Sbjct: 12719039 tgtatcaaagaaaaatcctgtcagccgtcctggaagacatgttggccctcctccaggatt 12718980
Query: 2891 taac 2894
||||
Sbjct: 12718979 taac 12718976
Score = 46.1 bits (23), Expect = 0.97
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 3043 ccagcagtgcattcaccactcccttccctttccctgggaaaca 3085
|||||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 12718827 ccagcagtactttcaccactccctttccttttcctggaaaaca 12718785
Score = 46.1 bits (23), Expect = 0.97
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1152 tttgttaggctcaatggaattcttttcacaa 1182
|||||| | ||||||||||||||||||||||
Sbjct: 12720773 tttgttcgcctcaatggaattcttttcacaa 12720743
Score = 44.1 bits (22), Expect = 3.8
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 3386 tttcttttggagaatggtggtcttggaagcatagcaagtgct 3427
||||||||||| ||| | |||||||||||||| ||||||||
Sbjct: 12718381 tttcttttggaagatgcttgtcttggaagcataacaagtgct 12718340
Score = 44.1 bits (22), Expect = 3.8
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 759 cgtgaatatgctgcggcttctaattactacaaggaggcagtttcaatctgcccttccagc 818
|||||||||||||| || |||| ||||||||||| |||| ||| | |||||||| |
Sbjct: 12722515 cgtgaatatgctgcagcctctatctactacaaggaagcagcttcgctgtgcccttcgaat 12722456
Query: 819 ggcaatccacaccatcag 836
||||| ||||| ||||||
Sbjct: 12722455 ggcaacccacatcatcag 12722438
>dbj|AP005166.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0058D03
Length = 184235
Score = 147 bits (74), Expect = 4e-31
Identities = 230/282 (81%)
Strand = Plus / Minus
Query: 1321 ttgcaatccttatattcacagtgcacaacgtgaaaaaggaatcagataaccagtcatatg 1380
|||| ||||||||||||||||||||||| | || || || ||||||| || |||||||
Sbjct: 64517 ttgctatccttatattcacagtgcacaatgcaaacaaagacgcagataatcaatcatatg 64458
Query: 1381 ctgaaattgtccaacgcagggtacttcttcaaaatgcatttacagctgcttttgagtttg 1440
|||||||||| |||||||| || |||||||||||||||||| | || || ||||| ||||
Sbjct: 64457 ctgaaattgtgcaacgcagagttcttcttcaaaatgcatttgctgcagcctttgaatttg 64398
Query: 1441 ttggacatattctcaaaaggtgctcagagcttcgtgacattgcatcaagtttctatcttc 1500
||||| | |||||||||| ||| ||||||||| ||| ||||||||||| |||| | |
Sbjct: 64397 ttggataccttctcaaaagatgcgcagagcttcatgatgttgcatcaagtatctacttgc 64338
Query: 1501 cagccattgtggtctacatcgaatggctcgcatgccaaccggagttagctgctgattcgg 1560
|||| ||| |||||| ||| |||||||| || ||||| || || || | ||| ||| |
Sbjct: 64337 cagctattttggtcttcattgaatggctggcgtgccatccagattttgtggctagttctg 64278
Query: 1561 agatggacgagaagcatgcgaatgctcgatctttcttctgga 1602
||||||| || ||||| || |||| |||||||||||||||
Sbjct: 64277 agatggatgaaaagcaagccgatgcaagatctttcttctgga 64236
Score = 147 bits (74), Expect = 4e-31
Identities = 131/150 (87%)
Strand = Plus / Minus
Query: 272 gtcagcacagtccaaagtcccatcagatcccaacatatggcttcagatgcgtgagaactt 331
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 66976 gtcagcacagtccaaagtgccatcagatcctaacatatggtttcagatgcgtgagaacta 66917
Query: 332 tgagaaaatgattctggcagatcatgacttttgtgaaaagcatgagatcgagtatatttt 391
||| || || || || || ||||||||||| | |||||| | |||||| || ||| || |
Sbjct: 66916 tgaaaagataatccttgctgatcatgacttctctgaaaaacgtgagatagaatatcttct 66857
Query: 392 gtggcagttgcactacaaaagaatcgagga 421
|||||||||||||||||||||||| |||||
Sbjct: 66856 gtggcagttgcactacaaaagaattgagga 66827
Score = 107 bits (54), Expect = 3e-19
Identities = 216/270 (80%)
Strand = Plus / Minus
Query: 1656 gatggtgatgatgatgaggcttgcttttttgatatgggcgtgtatgaagagggtgaaact 1715
||||||||| ||||||| ||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 64182 gatggtgataatgatgaaacttgcttttttgacatgggcacatatgaggagggtgaaact 64123
Query: 1716 ggcaatcgacttgcattgtgggaagattatgaattaaggggattttcccccttggtgcct 1775
|| || | ||||| |||||||| ||| ||| ||||| || ||||| || ||||| |||
Sbjct: 64122 gggaacaggcttgcgttgtgggaggatgttgagttaagagggttttcgcctttggtacct 64063
Query: 1776 gcacatattatcttggatttctcaagcaagcacacatttggaagtgatggtagcactaag 1835
|| || ||||||||| ||||| | |||||| |||||||||||||| | || |||
Sbjct: 64062 gctcaaggtatcttggacttctccaccaagcaaggttttggaagtgatggaggtaccaag 64003
Query: 1836 gagaagaaagcacgggcacaacggatactttctgcagggaaggctctactcaattttgtc 1895
||||| |||||||| | | || |||| ||| ||||||||||||| || | ||||| ||
Sbjct: 64002 gagaaaaaagcacgtgtagaaaggattcttgctgcagggaaggcgctgttaaatttcgtt 63943
Query: 1896 cagattgatcaactgagaatattttttgat 1925
|| |||||||| ||| |||||| |||||||
Sbjct: 63942 caaattgatcagctgcgaatatattttgat 63913
Score = 54.0 bits (27), Expect = 0.004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 2112 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 2166
||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| ||||
Sbjct: 63726 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 63672
Score = 48.1 bits (24), Expect = 0.25
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 2831 tgtatcaaagaagaatcctgtaagtcgtccatcaaggcccgttggtcctcctccaggatt 2890
|||||||||||| |||||||| || ||||| ||| | ||||| ||||||||||||||
Sbjct: 63034 tgtatcaaagaaaaatcctgtcagccgtcctggaagacatgttggccctcctccaggatt 62975
Query: 2891 taac 2894
||||
Sbjct: 62974 taac 62971
Score = 46.1 bits (23), Expect = 0.97
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 3043 ccagcagtgcattcaccactcccttccctttccctgggaaaca 3085
|||||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 62822 ccagcagtactttcaccactccctttccttttcctggaaaaca 62780
Score = 46.1 bits (23), Expect = 0.97
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1152 tttgttaggctcaatggaattcttttcacaa 1182
|||||| | ||||||||||||||||||||||
Sbjct: 64768 tttgttcgcctcaatggaattcttttcacaa 64738
Score = 44.1 bits (22), Expect = 3.8
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 3386 tttcttttggagaatggtggtcttggaagcatagcaagtgct 3427
||||||||||| ||| | |||||||||||||| ||||||||
Sbjct: 62376 tttcttttggaagatgcttgtcttggaagcataacaagtgct 62335
Score = 44.1 bits (22), Expect = 3.8
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 759 cgtgaatatgctgcggcttctaattactacaaggaggcagtttcaatctgcccttccagc 818
|||||||||||||| || |||| ||||||||||| |||| ||| | |||||||| |
Sbjct: 66510 cgtgaatatgctgcagcctctatctactacaaggaagcagcttcgctgtgcccttcgaat 66451
Query: 819 ggcaatccacaccatcag 836
||||| ||||| ||||||
Sbjct: 66450 ggcaacccacatcatcag 66433
>dbj|AP005162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0051M20
Length = 152702
Score = 147 bits (74), Expect = 4e-31
Identities = 230/282 (81%)
Strand = Plus / Minus
Query: 1321 ttgcaatccttatattcacagtgcacaacgtgaaaaaggaatcagataaccagtcatatg 1380
|||| ||||||||||||||||||||||| | || || || ||||||| || |||||||
Sbjct: 106491 ttgctatccttatattcacagtgcacaatgcaaacaaagacgcagataatcaatcatatg 106432
Query: 1381 ctgaaattgtccaacgcagggtacttcttcaaaatgcatttacagctgcttttgagtttg 1440
|||||||||| |||||||| || |||||||||||||||||| | || || ||||| ||||
Sbjct: 106431 ctgaaattgtgcaacgcagagttcttcttcaaaatgcatttgctgcagcctttgaatttg 106372
Query: 1441 ttggacatattctcaaaaggtgctcagagcttcgtgacattgcatcaagtttctatcttc 1500
||||| | |||||||||| ||| ||||||||| ||| ||||||||||| |||| | |
Sbjct: 106371 ttggataccttctcaaaagatgcgcagagcttcatgatgttgcatcaagtatctacttgc 106312
Query: 1501 cagccattgtggtctacatcgaatggctcgcatgccaaccggagttagctgctgattcgg 1560
|||| ||| |||||| ||| |||||||| || ||||| || || || | ||| ||| |
Sbjct: 106311 cagctattttggtcttcattgaatggctggcgtgccatccagattttgtggctagttctg 106252
Query: 1561 agatggacgagaagcatgcgaatgctcgatctttcttctgga 1602
||||||| || ||||| || |||| |||||||||||||||
Sbjct: 106251 agatggatgaaaagcaagccgatgcaagatctttcttctgga 106210
Score = 147 bits (74), Expect = 4e-31
Identities = 131/150 (87%)
Strand = Plus / Minus
Query: 272 gtcagcacagtccaaagtcccatcagatcccaacatatggcttcagatgcgtgagaactt 331
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 108950 gtcagcacagtccaaagtgccatcagatcctaacatatggtttcagatgcgtgagaacta 108891
Query: 332 tgagaaaatgattctggcagatcatgacttttgtgaaaagcatgagatcgagtatatttt 391
||| || || || || || ||||||||||| | |||||| | |||||| || ||| || |
Sbjct: 108890 tgaaaagataatccttgctgatcatgacttctctgaaaaacgtgagatagaatatcttct 108831
Query: 392 gtggcagttgcactacaaaagaatcgagga 421
|||||||||||||||||||||||| |||||
Sbjct: 108830 gtggcagttgcactacaaaagaattgagga 108801
Score = 107 bits (54), Expect = 3e-19
Identities = 216/270 (80%)
Strand = Plus / Minus
Query: 1656 gatggtgatgatgatgaggcttgcttttttgatatgggcgtgtatgaagagggtgaaact 1715
||||||||| ||||||| ||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 106156 gatggtgataatgatgaaacttgcttttttgacatgggcacatatgaggagggtgaaact 106097
Query: 1716 ggcaatcgacttgcattgtgggaagattatgaattaaggggattttcccccttggtgcct 1775
|| || | ||||| |||||||| ||| ||| ||||| || ||||| || ||||| |||
Sbjct: 106096 gggaacaggcttgcgttgtgggaggatgttgagttaagagggttttcgcctttggtacct 106037
Query: 1776 gcacatattatcttggatttctcaagcaagcacacatttggaagtgatggtagcactaag 1835
|| || ||||||||| ||||| | |||||| |||||||||||||| | || |||
Sbjct: 106036 gctcaaggtatcttggacttctccaccaagcaaggttttggaagtgatggaggtaccaag 105977
Query: 1836 gagaagaaagcacgggcacaacggatactttctgcagggaaggctctactcaattttgtc 1895
||||| |||||||| | | || |||| ||| ||||||||||||| || | ||||| ||
Sbjct: 105976 gagaaaaaagcacgtgtagaaaggattcttgctgcagggaaggcgctgttaaatttcgtt 105917
Query: 1896 cagattgatcaactgagaatattttttgat 1925
|| |||||||| ||| |||||| |||||||
Sbjct: 105916 caaattgatcagctgcgaatatattttgat 105887
Score = 54.0 bits (27), Expect = 0.004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 2112 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 2166
||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| ||||
Sbjct: 105700 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 105646
Score = 48.1 bits (24), Expect = 0.25
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 2831 tgtatcaaagaagaatcctgtaagtcgtccatcaaggcccgttggtcctcctccaggatt 2890
|||||||||||| |||||||| || ||||| ||| | ||||| ||||||||||||||
Sbjct: 105008 tgtatcaaagaaaaatcctgtcagccgtcctggaagacatgttggccctcctccaggatt 104949
Query: 2891 taac 2894
||||
Sbjct: 104948 taac 104945
Score = 46.1 bits (23), Expect = 0.97
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 3043 ccagcagtgcattcaccactcccttccctttccctgggaaaca 3085
|||||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 104796 ccagcagtactttcaccactccctttccttttcctggaaaaca 104754
Score = 46.1 bits (23), Expect = 0.97
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1152 tttgttaggctcaatggaattcttttcacaa 1182
|||||| | ||||||||||||||||||||||
Sbjct: 106742 tttgttcgcctcaatggaattcttttcacaa 106712
Score = 44.1 bits (22), Expect = 3.8
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 3386 tttcttttggagaatggtggtcttggaagcatagcaagtgct 3427
||||||||||| ||| | |||||||||||||| ||||||||
Sbjct: 104350 tttcttttggaagatgcttgtcttggaagcataacaagtgct 104309
Score = 44.1 bits (22), Expect = 3.8
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 759 cgtgaatatgctgcggcttctaattactacaaggaggcagtttcaatctgcccttccagc 818
|||||||||||||| || |||| ||||||||||| |||| ||| | |||||||| |
Sbjct: 108484 cgtgaatatgctgcagcctctatctactacaaggaagcagcttcgctgtgcccttcgaat 108425
Query: 819 ggcaatccacaccatcag 836
||||| ||||| ||||||
Sbjct: 108424 ggcaacccacatcatcag 108407
>dbj|AK105754.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C07, full
insert sequence
Length = 3365
Score = 147 bits (74), Expect = 4e-31
Identities = 230/282 (81%)
Strand = Plus / Plus
Query: 1321 ttgcaatccttatattcacagtgcacaacgtgaaaaaggaatcagataaccagtcatatg 1380
|||| ||||||||||||||||||||||| | || || || ||||||| || |||||||
Sbjct: 757 ttgctatccttatattcacagtgcacaatgcaaacaaagacgcagataatcaatcatatg 816
Query: 1381 ctgaaattgtccaacgcagggtacttcttcaaaatgcatttacagctgcttttgagtttg 1440
|||||||||| |||||||| || |||||||||||||||||| | || || ||||| ||||
Sbjct: 817 ctgaaattgtgcaacgcagagttcttcttcaaaatgcatttgctgcagcctttgaatttg 876
Query: 1441 ttggacatattctcaaaaggtgctcagagcttcgtgacattgcatcaagtttctatcttc 1500
||||| | |||||||||| ||| ||||||||| ||| ||||||||||| |||| | |
Sbjct: 877 ttggataccttctcaaaagatgcgcagagcttcatgatgttgcatcaagtatctacttgc 936
Query: 1501 cagccattgtggtctacatcgaatggctcgcatgccaaccggagttagctgctgattcgg 1560
|||| ||| |||||| ||| |||||||| || ||||| || || || | ||| ||| |
Sbjct: 937 cagctattttggtcttcattgaatggctggcgtgccatccagattttgtggctagttctg 996
Query: 1561 agatggacgagaagcatgcgaatgctcgatctttcttctgga 1602
||||||| || ||||| || |||| |||||||||||||||
Sbjct: 997 agatggatgaaaagcaagccgatgcaagatctttcttctgga 1038
Score = 107 bits (54), Expect = 3e-19
Identities = 216/270 (80%)
Strand = Plus / Plus
Query: 1656 gatggtgatgatgatgaggcttgcttttttgatatgggcgtgtatgaagagggtgaaact 1715
||||||||| ||||||| ||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 1092 gatggtgataatgatgaaacttgcttttttgacatgggcacatatgaggagggtgaaact 1151
Query: 1716 ggcaatcgacttgcattgtgggaagattatgaattaaggggattttcccccttggtgcct 1775
|| || | ||||| |||||||| ||| ||| ||||| || ||||| || ||||| |||
Sbjct: 1152 gggaacaggcttgcgttgtgggaggatgttgagttaagagggttttcgcctttggtacct 1211
Query: 1776 gcacatattatcttggatttctcaagcaagcacacatttggaagtgatggtagcactaag 1835
|| || ||||||||| ||||| | |||||| |||||||||||||| | || |||
Sbjct: 1212 gctcaaggtatcttggacttctccaccaagcaaggttttggaagtgatggaggtaccaag 1271
Query: 1836 gagaagaaagcacgggcacaacggatactttctgcagggaaggctctactcaattttgtc 1895
||||| |||||||| | | || |||| ||| ||||||||||||| || | ||||| ||
Sbjct: 1272 gagaaaaaagcacgtgtagaaaggattcttgctgcagggaaggcgctgttaaatttcgtt 1331
Query: 1896 cagattgatcaactgagaatattttttgat 1925
|| |||||||| ||| |||||| |||||||
Sbjct: 1332 caaattgatcagctgcgaatatattttgat 1361
Score = 63.9 bits (32), Expect = 4e-06
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 1152 tttgttaggctcaatggaattcttttcacaaagaccagtttggaaacatttg 1203
|||||| | |||||||||||||||||||||| ||| || |||||||||||||
Sbjct: 588 tttgttcgcctcaatggaattcttttcacaaggacaagcttggaaacatttg 639
Score = 61.9 bits (31), Expect = 2e-05
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 759 cgtgaatatgctgcggcttctaattactacaaggaggcagtttcaatctgcccttccagc 818
|||||||||||||| || |||| ||||||||||| |||| ||| | |||||||| |
Sbjct: 183 cgtgaatatgctgcagcctctatctactacaaggaagcagcttcgctgtgcccttcgaat 242
Query: 819 ggcaatccacaccatcagcttgcaata 845
||||| ||||| |||||||||||||||
Sbjct: 243 ggcaacccacatcatcagcttgcaata 269
Score = 54.0 bits (27), Expect = 0.004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 2112 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 2166
||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| ||||
Sbjct: 1548 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 1602
Score = 48.1 bits (24), Expect = 0.25
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 2831 tgtatcaaagaagaatcctgtaagtcgtccatcaaggcccgttggtcctcctccaggatt 2890
|||||||||||| |||||||| || ||||| ||| | ||||| ||||||||||||||
Sbjct: 2240 tgtatcaaagaaaaatcctgtcagccgtcctggaagacatgttggccctcctccaggatt 2299
Query: 2891 taac 2894
||||
Sbjct: 2300 taac 2303
Score = 46.1 bits (23), Expect = 0.97
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 3043 ccagcagtgcattcaccactcccttccctttccctgggaaaca 3085
|||||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 2452 ccagcagtactttcaccactccctttccttttcctggaaaaca 2494
Score = 44.1 bits (22), Expect = 3.8
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 3386 tttcttttggagaatggtggtcttggaagcatagcaagtgct 3427
||||||||||| ||| | |||||||||||||| ||||||||
Sbjct: 2771 tttcttttggaagatgcttgtcttggaagcataacaagtgct 2812
>dbj|AK100410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087H17, full
insert sequence
Length = 4003
Score = 147 bits (74), Expect = 4e-31
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 272 gtcagcacagtccaaagtcccatcagatcccaacatatggcttcagatgcgtgagaactt 331
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 426 gtcagcacagtccaaagtgccatcagatcctaacatatggtttcagatgcgtgagaacta 485
Query: 332 tgagaaaatgattctggcagatcatgacttttgtgaaaagcatgagatcgagtatatttt 391
||| || || || || || ||||||||||| | |||||| | |||||| || ||| || |
Sbjct: 486 tgaaaagataatccttgctgatcatgacttctctgaaaaacgtgagatagaatatcttct 545
Query: 392 gtggcagttgcactacaaaagaatcgagga 421
|||||||||||||||||||||||| |||||
Sbjct: 546 gtggcagttgcactacaaaagaattgagga 575
Score = 147 bits (74), Expect = 4e-31
Identities = 230/282 (81%)
Strand = Plus / Plus
Query: 1321 ttgcaatccttatattcacagtgcacaacgtgaaaaaggaatcagataaccagtcatatg 1380
|||| ||||||||||||||||||||||| | || || || ||||||| || |||||||
Sbjct: 1466 ttgctatccttatattcacagtgcacaatgcaaacaaagacgcagataatcaatcatatg 1525
Query: 1381 ctgaaattgtccaacgcagggtacttcttcaaaatgcatttacagctgcttttgagtttg 1440
|||||||||| |||||||| || |||||||||||||||||| | || || ||||| ||||
Sbjct: 1526 ctgaaattgtgcaacgcagagttcttcttcaaaatgcatttgctgcagcctttgaatttg 1585
Query: 1441 ttggacatattctcaaaaggtgctcagagcttcgtgacattgcatcaagtttctatcttc 1500
||||| | |||||||||| ||| ||||||||| ||| ||||||||||| |||| | |
Sbjct: 1586 ttggataccttctcaaaagatgcgcagagcttcatgatgttgcatcaagtatctacttgc 1645
Query: 1501 cagccattgtggtctacatcgaatggctcgcatgccaaccggagttagctgctgattcgg 1560
|||| ||| |||||| ||| |||||||| || ||||| || || || | ||| ||| |
Sbjct: 1646 cagctattttggtcttcattgaatggctggcgtgccatccagattttgtggctagttctg 1705
Query: 1561 agatggacgagaagcatgcgaatgctcgatctttcttctgga 1602
||||||| || ||||| || |||| |||||||||||||||
Sbjct: 1706 agatggatgaaaagcaagccgatgcaagatctttcttctgga 1747
Score = 107 bits (54), Expect = 3e-19
Identities = 216/270 (80%)
Strand = Plus / Plus
Query: 1656 gatggtgatgatgatgaggcttgcttttttgatatgggcgtgtatgaagagggtgaaact 1715
||||||||| ||||||| ||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 1801 gatggtgataatgatgaaacttgcttttttgacatgggcacatatgaggagggtgaaact 1860
Query: 1716 ggcaatcgacttgcattgtgggaagattatgaattaaggggattttcccccttggtgcct 1775
|| || | ||||| |||||||| ||| ||| ||||| || ||||| || ||||| |||
Sbjct: 1861 gggaacaggcttgcgttgtgggaggatgttgagttaagagggttttcgcctttggtacct 1920
Query: 1776 gcacatattatcttggatttctcaagcaagcacacatttggaagtgatggtagcactaag 1835
|| || ||||||||| ||||| | |||||| |||||||||||||| | || |||
Sbjct: 1921 gctcaaggtatcttggacttctccaccaagcaaggttttggaagtgatggaggtaccaag 1980
Query: 1836 gagaagaaagcacgggcacaacggatactttctgcagggaaggctctactcaattttgtc 1895
||||| |||||||| | | || |||| ||| ||||||||||||| || | ||||| ||
Sbjct: 1981 gagaaaaaagcacgtgtagaaaggattcttgctgcagggaaggcgctgttaaatttcgtt 2040
Query: 1896 cagattgatcaactgagaatattttttgat 1925
|| |||||||| ||| |||||| |||||||
Sbjct: 2041 caaattgatcagctgcgaatatattttgat 2070
Score = 63.9 bits (32), Expect = 4e-06
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 1152 tttgttaggctcaatggaattcttttcacaaagaccagtttggaaacatttg 1203
|||||| | |||||||||||||||||||||| ||| || |||||||||||||
Sbjct: 1297 tttgttcgcctcaatggaattcttttcacaaggacaagcttggaaacatttg 1348
Score = 61.9 bits (31), Expect = 2e-05
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 759 cgtgaatatgctgcggcttctaattactacaaggaggcagtttcaatctgcccttccagc 818
|||||||||||||| || |||| ||||||||||| |||| ||| | |||||||| |
Sbjct: 892 cgtgaatatgctgcagcctctatctactacaaggaagcagcttcgctgtgcccttcgaat 951
Query: 819 ggcaatccacaccatcagcttgcaata 845
||||| ||||| |||||||||||||||
Sbjct: 952 ggcaacccacatcatcagcttgcaata 978
Score = 54.0 bits (27), Expect = 0.004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 2112 ggagaagatgatgaagaaattgttttcaaacctacagtatctgagaagctcccga 2166
||||| |||||||||||||| |||||||| ||| |||| ||||| ||||| ||||
Sbjct: 2257 ggagatgatgatgaagaaatagttttcaagcctccagtttctgaaaagcttccga 2311
Score = 48.1 bits (24), Expect = 0.25
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 2831 tgtatcaaagaagaatcctgtaagtcgtccatcaaggcccgttggtcctcctccaggatt 2890
|||||||||||| |||||||| || ||||| ||| | ||||| ||||||||||||||
Sbjct: 2949 tgtatcaaagaaaaatcctgtcagccgtcctggaagacatgttggccctcctccaggatt 3008
Query: 2891 taac 2894
||||
Sbjct: 3009 taac 3012
Score = 46.1 bits (23), Expect = 0.97
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 3043 ccagcagtgcattcaccactcccttccctttccctgggaaaca 3085
|||||||| | |||||||||||||| ||||| ||||| |||||
Sbjct: 3161 ccagcagtactttcaccactccctttccttttcctggaaaaca 3203
Score = 44.1 bits (22), Expect = 3.8
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 3386 tttcttttggagaatggtggtcttggaagcatagcaagtgct 3427
||||||||||| ||| | |||||||||||||| ||||||||
Sbjct: 3481 tttcttttggaagatgcttgtcttggaagcataacaagtgct 3522
>gb|AC159239.3| Mus musculus BAC clone RP24-496E14 from chromosome 13, complete sequence
Length = 206286
Score = 44.1 bits (22), Expect = 3.8
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1242 ctcctctcttctggtccaaatg 1263
||||||||||||||||||||||
Sbjct: 121230 ctcctctcttctggtccaaatg 121209
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Dec 3, 2006 5:45 PM
Number of letters in database: 18,610,659,111
Number of sequences in database: 4,638,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 754,947,172
Number of extensions: 40235855
Number of successful extensions: 256749
Number of sequences better than 10.0: 36
Number of HSP's gapped: 256716
Number of HSP's successfully gapped: 104
Length of query: 3941
Length of database: 18,610,659,111
Length adjustment: 24
Effective length of query: 3917
Effective length of database: 18,499,340,271
Effective search space: 72461915841507
Effective search space used: 72461915841507
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)