ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf3n05 |
|---|---|
| Clone Library Name | barley_pub |
>Q8YVD0:DAPF2_ANASP Diaminopimelate epimerase 2 - Anabaena sp. (strain PCC 7120)| Length = 279 Score = 323 bits (827), Expect = 1e-87 Identities = 155/285 (54%), Positives = 197/285 (69%), Gaps = 1/285 (0%) Frame = +1 Query: 253 ALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYT 432 A+ F KY GLGNDFI++DNR S P +TPE+A ++CDR+FG+GADGVIF +PG NG DYT Sbjct: 2 AIEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYT 61 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENL-QGTHSFKIHTGAGLIIPEIQDDGKVKVD 609 MRIFNSDGSEPEMCGNG+RC A F+A++E L + +++IHT AG+I P++ DG++KVD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVD 121 Query: 610 MGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQV 789 MG P L ++PT L + + V+ L ++G TW TCVSMGNPHC+TF V V Sbjct: 122 MGLPRLLAGEIPTTLGAADGK-VINQPLEVEGQTWEVTCVSMGNPHCITF------VEDV 174 Query: 790 DDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXX 969 + L IGPKFEHH FP RTNTEF+QV+SR +LKMRVWER Sbjct: 175 AAIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVA 234 Query: 970 XXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 L GR++R V+LPGGPLEIEW E + +YMTGPA+ VF G + Sbjct: 235 AVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 279
>P74667:DAPF_SYNY3 Diaminopimelate epimerase - Synechocystis sp. (strain PCC 6803)| Length = 279 Score = 318 bits (816), Expect = 3e-86 Identities = 158/282 (56%), Positives = 194/282 (68%) Frame = +1 Query: 253 ALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYT 432 AL F KY GLGNDFI+VDNR S P +TP++A +LCDR+FG+GADGVIF +PG G DYT Sbjct: 2 ALSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYT 61 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 MRIFNSDGSEPEMCGNG+RC A+F+A++E ++ +++IHT AG+I P++ DG+VKVDM Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAKFLADLEGVE-EKTYRIHTLAGVITPQLLADGQVKVDM 120 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G+P L +PT L + E VV LA+ G TW TCVSMGNPHC+TF V VD Sbjct: 121 GEPQLLAELIPTTL-APAGEKVVDLPLAVAGQTWAVTCVSMGNPHCLTF------VDDVD 173 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 L L++IGP FEHH F RTNTEF+QVL LKMRVWER Sbjct: 174 SLNLTEIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAA 233 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 L GR +R+C V+LPGG LEIEW +N +YMTGPA+ VF G Sbjct: 234 VLTGRGDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSG 275
>Q8DGM2:DAPF_SYNEL Diaminopimelate epimerase - Synechococcus elongatus| (Thermosynechococcus elongatus) Length = 286 Score = 261 bits (668), Expect = 4e-69 Identities = 139/291 (47%), Positives = 179/291 (61%), Gaps = 7/291 (2%) Frame = +1 Query: 253 ALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYT 432 +L F KYQGLGNDF+++DNR +TPE+A CDR+FGVGADGVIF++ G +DY Sbjct: 2 SLSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCDRHFGVGADGVIFLLRGTGESDYR 61 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTH--SFKIHTGAGLIIPEIQDDGKVKV 606 MR++N+DGS +MCGNG+RC A+FI +E ++I T AGLI+PE+Q DG+V V Sbjct: 62 MRMYNADGSVAQMCGNGIRCLAKFIFALEGRSAGEIVRYRIDTLAGLIVPEVQADGQVTV 121 Query: 607 DMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQ 786 DMG+P L +PT L + ++ VV L + W TCVSMGNPHCVTF V Sbjct: 122 DMGKPRLLAQQIPTTL-AAADQKVVDVPLTVGDRQWLVTCVSMGNPHCVTF------VED 174 Query: 787 VDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXX 966 V L L+ +GP+FEHH FP RTNTEFVQVL L+MRVWER Sbjct: 175 VAALDLAVLGPQFEHHPAFPQRTNTEFVQVLGSDRLRMRVWERGAGMTLACGTGACATLV 234 Query: 967 XXXL-----EGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 L G + + V+LPGG L+I W + H+YMTGPA AVF G++ Sbjct: 235 AAVLTGCLSPGGDQAQATVELPGGDLQIRWDLPSQHLYMTGPALAVFSGTL 285
>Q72W63:DAPF_LEPIC Diaminopimelate epimerase - Leptospira interrogans serogroup| Icterohaemorrhagiae serovar copenhageni Length = 281 Score = 199 bits (506), Expect = 2e-50 Identities = 112/291 (38%), Positives = 161/291 (55%), Gaps = 7/291 (2%) Frame = +1 Query: 253 ALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYT 432 +L F K +G+GND++ +D+ + + ++TPE+ K+ DRNFG+G+DGVIF+ G D+ Sbjct: 3 SLKFTKMEGIGNDYVYIDSTRNDI-RLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFM 60 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGK----- 597 M ++NSDGS EMCGNG+RC A++I + L + + KI TGAG++ +++ Sbjct: 61 MDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDL 119 Query: 598 VKVDMGQPILHGPDVPTKLPST--RNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKE 771 V VDMG+P+L VP+++P E ++ L I T VSMGNPHCV F Sbjct: 120 VSVDMGKPVL----VPSQIPVVWKNEETIIDQPLEIGDKNLKFTAVSMGNPHCVIF---- 171 Query: 772 LKVLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXX 951 V D+ + IGP E H +FP R N EFV + + HL R WER Sbjct: 172 --VDDSDEFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGA 229 Query: 952 XXXXXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 L GR+ + +DL GG L I+W+E N + MTGPA +F G I Sbjct: 230 CAVMVAGNLTGRSGKDVQIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 279
>Q8F9V5:DAPF_LEPIN Diaminopimelate epimerase - Leptospira interrogans| Length = 281 Score = 196 bits (498), Expect = 2e-49 Identities = 111/291 (38%), Positives = 160/291 (54%), Gaps = 7/291 (2%) Frame = +1 Query: 253 ALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYT 432 +L F K +G+GND++ +D+ + + ++TPE+ K+ DRNFG+G+DGVIF+ G D+ Sbjct: 3 SLKFTKMEGIGNDYVYIDSTRNDI-RLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFM 60 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGK----- 597 M ++NSDGS EMCGNG+RC A++I + L + + KI TGAG++ +++ Sbjct: 61 MDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDL 119 Query: 598 VKVDMGQPILHGPDVPTKLPST--RNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKE 771 V VDMG+P+L VP+++P E ++ L I T VSMGNPHCV F Sbjct: 120 VSVDMGKPVL----VPSQIPVVWKNEETIIDQPLEIGDKNLKFTAVSMGNPHCVIF---- 171 Query: 772 LKVLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXX 951 V D+ + IGP E H +FP R N EFV + + HL R WER Sbjct: 172 --VDDSDEFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGA 229 Query: 952 XXXXXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 L R+ + +DL GG L I+W+E N + MTGPA +F G I Sbjct: 230 CAVMVAGNLTRRSGKDVQIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 279
>Q88B09:DAPF_PSESM Diaminopimelate epimerase - Pseudomonas syringae pv. tomato| Length = 276 Score = 192 bits (489), Expect = 2e-48 Identities = 110/284 (38%), Positives = 150/284 (52%), Gaps = 1/284 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV-MPGINGADYT 432 L F K GLGNDF+++D S + P+ A + DR+ G+G D ++ V P D+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFNSDGSE E CGNG RCFARF+ + + L ++ T G+I EI+ DG++ VDM Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G P L VP ++P E L +DG T VSMGNPH V L+V ++ Sbjct: 121 GPPRL----VPEEIPFQAAEQAKSYSLDVDGQTVELAAVSMGNPHAV------LRVDDIN 170 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 + + +GPK EHH FPAR N F+ V+ R ++RVWER Sbjct: 171 NAPVHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAA 230 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 +G + ++DLPGG L IEW + V MTGPA V+ G + Sbjct: 231 ISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQV 274
>O05322:DAPF_PSEFL Diaminopimelate epimerase - Pseudomonas fluorescens| Length = 276 Score = 191 bits (485), Expect = 6e-48 Identities = 105/284 (36%), Positives = 154/284 (54%), Gaps = 1/284 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV-MPGINGADYT 432 L F K GLGNDF+++D S + P+ A + DR+ G+G D ++ V P D+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPNNPDVDFR 61 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE E CGNG RCFARF+ + + L ++ T +G+I +++ DG++ V+M Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDVRSDGQIGVNM 120 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G P L D+P + P+ + ++ +DG+T VSMGNPH V L+V ++ Sbjct: 121 GAPRLVPADIPFQAPAQ----ALSYQVDVDGATVELAAVSMGNPHAV------LRVADIN 170 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 + ++GPK EHH FPAR N F+QV+ R ++RVWER Sbjct: 171 SAPVHELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAA 230 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 +G + ++DLPGG L IEW V MTGPA V+ G + Sbjct: 231 ISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQV 274
>Q88CF3:DAPF_PSEPK Diaminopimelate epimerase - Pseudomonas putida (strain KT2440)| Length = 276 Score = 186 bits (472), Expect = 2e-46 Identities = 106/284 (37%), Positives = 148/284 (52%), Gaps = 1/284 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV-MPGINGADYT 432 L F K GLGNDF+++D S + P+ A + DR+ GVG D ++ V P D+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 61 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE E CGNG RCFARF+ + + L ++ T +G+I+ ++Q+DG+V VDM Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G P +P ++P + + L +DG VSMGNPH V L+V V Sbjct: 121 GPPRF----IPAEIPFVADAQALNYPLEVDGQLHSIAAVSMGNPHAV------LRVDDVQ 170 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 + ++GPK E+H FP R N F+QV+ R +RVWER Sbjct: 171 TAPVHELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAA 230 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 +G + +DLPGG L IEW V MTGPA V+ G + Sbjct: 231 ISQGWMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQV 274
>Q8R9S4:DAPF_THETN Diaminopimelate epimerase - Thermoanaerobacter tengcongensis| Length = 274 Score = 184 bits (466), Expect = 1e-45 Identities = 110/288 (38%), Positives = 157/288 (54%), Gaps = 5/288 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEE-AAKLCDRNFGVGADGVIFVMPGINGADYT 432 + F K GLGNDFI+++ AV V E A KLCDR+FG+GADG++ V P + AD Sbjct: 1 MRFTKMHGLGNDFIVIE----AVEGVDYSELAVKLCDRHFGIGADGLLVVEPS-HIADIK 55 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEI-QDDGK---V 600 MRIFN+DGSE EMCGNG RCFA+++ E + + + T AG+I+PE+ ++GK V Sbjct: 56 MRIFNADGSEAEMCGNGSRCFAKYVYE-KGIVSKQKMTVETLAGVIMPELFVENGKIKSV 114 Query: 601 KVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKV 780 KV MG PI +P K + + + + IDG T+ + V +G PH + F V Sbjct: 115 KVYMGSPIFESSKIPVK---SEKQKFIDEPVKIDGKTYRLSSVRVGVPHTILF------V 165 Query: 781 LQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXX 960 ++ + ++GPK E +FP TN +FV+V ++ +R WER Sbjct: 166 SSFEESFMKELGPKIEKSSLFPEGTNVDFVKVEDEENISVRTWERGVGLTLACGSGASAS 225 Query: 961 XXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 L GR R V G L +EW+EDN+ +Y++G E VF G I Sbjct: 226 AVVSSLLGRTRRSVNVHFKAGVLLVEWKEDNS-IYLSGEVEEVFRGEI 272
>P57962:DAPF_PASMU Diaminopimelate epimerase - Pasteurella multocida| Length = 274 Score = 182 bits (463), Expect = 2e-45 Identities = 109/287 (37%), Positives = 153/287 (53%), Gaps = 4/287 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGIN-GADYT 432 + F K GLGNDF++VD + +PE +L DR+ G+G D ++ V P + D+ Sbjct: 1 MQFSKMHGLGNDFVVVDAITQNL-YFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFH 59 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE CGNG RCFARF+ ++ L + T G +I I+DDG ++++M Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTDKKDIAVSTQTGKMILSIKDDGMIRINM 118 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G+PI P K+P T N+ L T VSMGNPHCV +QVD Sbjct: 119 GEPIWE----PAKIPFTANKFEKNYILRTSIQTVLCGAVSMGNPHCV---------VQVD 165 Query: 793 DLKLSDI---GPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXX 963 D++ +++ GP E+HE FP R N F+QV+ R H+K+RV+ER Sbjct: 166 DIQTANVEQLGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAV 225 Query: 964 XXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 ++G + K VDLPGG L IEW ++MTG A V+ G I Sbjct: 226 AVGVMQGLLDSKVQVDLPGGSLIIEWEGVGKPLFMTGDATHVYDGVI 272
>Q8E9H5:DAPF_SHEON Diaminopimelate epimerase - Shewanella oneidensis| Length = 275 Score = 182 bits (462), Expect = 3e-45 Identities = 104/284 (36%), Positives = 150/284 (52%), Gaps = 1/284 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGIN-GADYT 432 + F K GLGNDF++VD V +PE+ +L DRNFGVG D ++ V P + D+ Sbjct: 2 IQFTKMHGLGNDFMVVDGITQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFH 60 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DG E E CGNG RCFARF+ + L + ++ T AG + ++ DG V V+M Sbjct: 61 YRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNM 119 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G P+L +P K ++Q T+ SMGNPHCV L V V Sbjct: 120 GVPVLEPSQIPFKAKKAEKTYLLQT----PQQTFLCGAASMGNPHCV------LDVEDVA 169 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 + +++IG HE FP N F+QV++ H+K+RV+ER Sbjct: 170 NANVAEIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVG 229 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 ++G+ +++ VDLPGG L I W + ++MTGPA+ V+ G I Sbjct: 230 QIQGKLDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQI 273
>P44859:DAPF_HAEIN Diaminopimelate epimerase - Haemophilus influenzae| Length = 274 Score = 180 bits (456), Expect = 1e-44 Identities = 106/287 (36%), Positives = 152/287 (52%), Gaps = 4/287 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV-MPGINGADYT 432 + F K GLGNDF++VD V TPE +L +R+ G+G D ++ V P D+ Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNV-FFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE CGNG RCFARF+ ++ L + T G ++ ++DD +++V+M Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNM 118 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G+PI P K+P T N+ L D T VSMGNPHC V+QVD Sbjct: 119 GEPIWE----PAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHC---------VVQVD 165 Query: 793 DLKLSDI---GPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXX 963 D++ +++ GP E HE FP R N F+Q++++ H+K+RV+ER Sbjct: 166 DIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAV 225 Query: 964 XXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 ++G VDLPGG L IEW + +YMTG A ++ G I Sbjct: 226 AVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFI 272
>Q51564:DAPF_PSEAE Diaminopimelate epimerase - Pseudomonas aeruginosa| Length = 276 Score = 179 bits (453), Expect = 3e-44 Identities = 107/284 (37%), Positives = 143/284 (50%), Gaps = 1/284 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV-MPGINGADYT 432 L F K GLGNDF+++D S V P+ DRN G+G D ++ V P D+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFR 61 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE E CGNG RCFARF+ + + L S ++ T G+I I+ DG+V VDM Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVQD-KRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G P L P ++P + E+ ++G VSMGNPH V L+V VD Sbjct: 121 GPPRL----APAEIPFQAEREALSYEIEVNGQRVELAAVSMGNPHGV------LRVENVD 170 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 + +GP+ E H FP + N F+QVL H ++RVWER Sbjct: 171 SAPVHSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAG 230 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 +G + +DLPGG L IEW V MTGPA V+ G + Sbjct: 231 IRQGWLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQV 274
>Q87KJ4:DAPF_VIBPA Diaminopimelate epimerase - Vibrio parahaemolyticus| Length = 276 Score = 176 bits (447), Expect = 2e-43 Identities = 107/283 (37%), Positives = 146/283 (51%), Gaps = 1/283 (0%) Frame = +1 Query: 259 HFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV-MPGINGADYTM 435 HF K GLGNDF++VD V + + +L DR+ GVG D ++ V P D+ Sbjct: 4 HFSKMHGLGNDFMVVDCITQNV-FFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHY 62 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMG 615 RIFN+DGSE E CGNG RCFARF+ ++ L +S + T G +I +++DDG+V V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFV-RLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMG 121 Query: 616 QPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDD 795 P +P K +++A T VSMGNPH VT V VD Sbjct: 122 VPEFEPNKIPFKAKQKEKTYIMRA----GDKTLFCGAVSMGNPHVVTV------VDDVDT 171 Query: 796 LKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXXX 975 + +GP E HE FP R N F+QV+SR H+++RV+ER Sbjct: 172 ADVDTLGPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACGAVAVGI 231 Query: 976 LEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 L+G + V LPGG L I W+ ++MTGPA VF G + Sbjct: 232 LQGLLDESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQL 274
>Q7MQC1:DAPF_VIBVY Diaminopimelate epimerase - Vibrio vulnificus (strain YJ016)| Length = 276 Score = 172 bits (437), Expect = 2e-42 Identities = 104/283 (36%), Positives = 145/283 (51%), Gaps = 1/283 (0%) Frame = +1 Query: 259 HFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV-MPGINGADYTM 435 HF K GLGNDF++VD V + E +L DR+ GVG D ++ V P D+ Sbjct: 4 HFSKMHGLGNDFMVVDCITQNV-YFSQELIRRLADRHTGVGFDQLLVVEAPYDPETDFHY 62 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMG 615 RIFN+DGSE E CGNG RCFARF+ ++ L +S + T G +I ++++D ++ V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFV-RMKGLTNKYSISVSTKKGKMILDVEEDDQITVNMG 121 Query: 616 QPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDD 795 P P K+P + + + T VSMGNPH VT V VD Sbjct: 122 VPEFE----PNKIPFRAKQKEKTYIMRVGEKTLFCGAVSMGNPHVVTV------VDDVDS 171 Query: 796 LKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXXX 975 ++ +GP E HE FP R N F+QV++R +++RV+ER Sbjct: 172 AEVETLGPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGI 231 Query: 976 LEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 L+G + V LPGG L I W+ +YMTGPA VF G + Sbjct: 232 LQGLLDENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQL 274
>Q8DD81:DAPF_VIBVU Diaminopimelate epimerase - Vibrio vulnificus| Length = 276 Score = 172 bits (437), Expect = 2e-42 Identities = 104/283 (36%), Positives = 145/283 (51%), Gaps = 1/283 (0%) Frame = +1 Query: 259 HFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV-MPGINGADYTM 435 HF K GLGNDF++VD V + E +L DR+ GVG D ++ V P D+ Sbjct: 4 HFSKMHGLGNDFMVVDCITQNV-YFSQELIRRLADRHTGVGFDQLLVVEAPYDPETDFHY 62 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMG 615 RIFN+DGSE E CGNG RCFARF+ ++ L +S + T G +I ++++D ++ V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFV-RMKGLTNKYSISVSTKKGKMILDVEEDDQITVNMG 121 Query: 616 QPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDD 795 P P K+P + + + T VSMGNPH VT V VD Sbjct: 122 VPEFE----PNKIPFRAKQKEKTYIMRVGEKTLFCGAVSMGNPHVVTV------VDDVDS 171 Query: 796 LKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXXX 975 ++ +GP E HE FP R N F+QV++R +++RV+ER Sbjct: 172 AEVETLGPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGI 231 Query: 976 LEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 L+G + V LPGG L I W+ +YMTGPA VF G + Sbjct: 232 LQGLLDENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQL 274
>P0A6K1:DAPF_ECOLI Diaminopimelate epimerase - Escherichia coli| Length = 274 Score = 172 bits (435), Expect = 4e-42 Identities = 104/284 (36%), Positives = 148/284 (52%), Gaps = 1/284 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGA-DYT 432 + F K GLGNDF++VD V +PE +L DR+ GVG D ++ V P + D+ Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNV-FFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE CGNG RCFARF+ ++ L ++ T G ++ + DD V+V+M Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G+P P+ +P N+A + T VSMGNPHCV ++V VD Sbjct: 119 GEPNFE----PSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCV------IQVDDVD 168 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 + +GP E HE FP R N F+QV+ R H+++RV+ER Sbjct: 169 TAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVG 228 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 +G + V+LPGG L+I W+ + +YMTGPA V+ G I Sbjct: 229 IQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFI 272
>P0A6K2:DAPF_ECO57 Diaminopimelate epimerase - Escherichia coli O157:H7| Length = 274 Score = 172 bits (435), Expect = 4e-42 Identities = 104/284 (36%), Positives = 148/284 (52%), Gaps = 1/284 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGA-DYT 432 + F K GLGNDF++VD V +PE +L DR+ GVG D ++ V P + D+ Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNV-FFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE CGNG RCFARF+ ++ L ++ T G ++ + DD V+V+M Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G+P P+ +P N+A + T VSMGNPHCV ++V VD Sbjct: 119 GEPNFE----PSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCV------IQVDDVD 168 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 + +GP E HE FP R N F+QV+ R H+++RV+ER Sbjct: 169 TAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVG 228 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 +G + V+LPGG L+I W+ + +YMTGPA V+ G I Sbjct: 229 IQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFI 272
>Q7VPN0:DAPF_HAEDU Diaminopimelate epimerase - Haemophilus ducreyi| Length = 274 Score = 171 bits (433), Expect = 7e-42 Identities = 104/287 (36%), Positives = 149/287 (51%), Gaps = 4/287 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGA-DYT 432 + F K GLGNDF+++D V +T + KL DR++GVG D ++ V P + D+ Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEDMIRKLADRHYGVGFDQLLLVEPPYDPELDFH 59 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE CGNG RCFARF++ ++ L + T G ++ + D+ V+V+M Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFVS-LKGLINRSDMYVSTAKGKMVLTLVDEENVRVNM 118 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G+PI P K+P N+ L D T VSMGNPHC VLQVD Sbjct: 119 GEPIWE----PAKIPFIANKFEKNYILRTDLQTVLCGVVSMGNPHC---------VLQVD 165 Query: 793 DLK---LSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXX 963 D++ + +G E H FP R N F+Q++ R H+K+RV+ER Sbjct: 166 DIEQATVHQLGALLEKHHRFPERANVGFMQIIDRHHIKLRVFERGVGETKACGSGACAAV 225 Query: 964 XXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 ++G + V LPGG L+IEW+ +YMTG A ++ G I Sbjct: 226 AVGIMQGVLDANVQVSLPGGTLQIEWQGKGKPLYMTGTATHIYDGFI 272
>P0A1F2:DAPF_SALTY Diaminopimelate epimerase - Salmonella typhimurium| Length = 274 Score = 170 bits (431), Expect = 1e-41 Identities = 102/284 (35%), Positives = 148/284 (52%), Gaps = 1/284 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGA-DYT 432 + F K GLGNDF++VD V +PE +L DR+ GVG D ++ V P + D+ Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNV-FFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 59 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE CGNG RCFARF+ ++ L ++ T G ++ + +D V+V+M Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNM 118 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G+P P ++P N+A + T VSMGNPHCV ++V VD Sbjct: 119 GEPNFE----PAQVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCV------IQVDNVD 168 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 + +GP E HE FP R N F+QV+ R H+++RV+ER Sbjct: 169 TAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVG 228 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 +G + V+LPGG L+I W+ + +YMTGPA ++ G I Sbjct: 229 IQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFI 272
>P0A1F3:DAPF_SALTI Diaminopimelate epimerase - Salmonella typhi| Length = 274 Score = 170 bits (431), Expect = 1e-41 Identities = 102/284 (35%), Positives = 148/284 (52%), Gaps = 1/284 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGA-DYT 432 + F K GLGNDF++VD V +PE +L DR+ GVG D ++ V P + D+ Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNV-FFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 59 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE CGNG RCFARF+ ++ L ++ T G ++ + +D V+V+M Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNM 118 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G+P P ++P N+A + T VSMGNPHCV ++V VD Sbjct: 119 GEPNFE----PAQVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCV------IQVDNVD 168 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 + +GP E HE FP R N F+QV+ R H+++RV+ER Sbjct: 169 TAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVG 228 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 +G + V+LPGG L+I W+ + +YMTGPA ++ G I Sbjct: 229 IQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFI 272
>P46357:DAPF_YERPE Diaminopimelate epimerase - Yersinia pestis| Length = 274 Score = 170 bits (430), Expect = 2e-41 Identities = 104/287 (36%), Positives = 149/287 (51%), Gaps = 4/287 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGA-DYT 432 + F K GLGNDF++VD V +PE +L DR+ GVG D ++ V P + D+ Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNV-YFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFH 59 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE CGNG RCFARF+ ++ L + T G +I + +D +V V+M Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKREISVSTQTGRMILSVTEDEQVCVNM 118 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G+P VP + +++A T VSMGNPHCV +QVD Sbjct: 119 GEPDFEPQTVPFRAAKAEKTYILRAA----EHTVLCGVVSMGNPHCV---------MQVD 165 Query: 793 DLKLSDI---GPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXX 963 D+ ++++ GP E+HE FP R N F+QV+SR H+++RV+ER Sbjct: 166 DVSVANVALLGPVLENHERFPERANIGFMQVVSRDHIRLRVYERGAGETQACGSGACAAV 225 Query: 964 XXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 ++ V+LPGG L I W+ + +YMTGPA V+ G I Sbjct: 226 AVGVVQDLLNENVHVELPGGSLHIRWQGPGHPLYMTGPATHVYDGFI 272
>Q8FBN6:DAPF_ECOL6 Diaminopimelate epimerase - Escherichia coli O6| Length = 274 Score = 170 bits (430), Expect = 2e-41 Identities = 102/284 (35%), Positives = 147/284 (51%), Gaps = 1/284 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGA-DYT 432 + F K GLGNDF++VD V +P+ +L DR+ GVG D ++ V P + D+ Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNV-FFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN+DGSE CGNG RCFARF+ ++ L ++ T G ++ + DD V+V+M Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G+P VP + +++A T VSMGNPHCV ++V VD Sbjct: 119 GEPNFEPSAVPFRANKVEKTYIMRAA----EQTILCGVVSMGNPHCV------IQVDDVD 168 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 + +GP E HE FP R N F+QV+ R H+++RV+ER Sbjct: 169 TAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVG 228 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 +G + V+LPGG L+I W+ + +YMTGPA V+ G I Sbjct: 229 IQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFI 272
>Q9KVL6:DAPF_VIBCH Diaminopimelate epimerase - Vibrio cholerae| Length = 276 Score = 169 bits (429), Expect = 2e-41 Identities = 104/286 (36%), Positives = 148/286 (51%), Gaps = 4/286 (1%) Frame = +1 Query: 259 HFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV-MPGINGADYTM 435 HF K GLGNDF++VD V +PE +L DR+ GVG D ++ V P +D+ Sbjct: 4 HFSKMHGLGNDFMVVDCITQNV-FFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHY 62 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMG 615 RIFN+DGSE E CGNG RCFARF+ ++ L ++ + T G ++ ++++ + V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFV-RMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMG 121 Query: 616 QPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDD 795 P P K+P ++ L + T VSMGNPH VT VDD Sbjct: 122 VPEFE----PNKIPFRAKQSEKTYILRVGEHTLFCGAVSMGNPHVVTV---------VDD 168 Query: 796 LK---LSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXX 966 ++ + +GP E HE FP R N F+QV+SR + +RV+ER Sbjct: 169 IRTAAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVA 228 Query: 967 XXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 L+G + + V LPGG LEI W+ +YMTGPA ++ G I Sbjct: 229 VGILQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274
>Q8ENX2:DAPF_OCEIH Diaminopimelate epimerase - Oceanobacillus iheyensis| Length = 286 Score = 166 bits (420), Expect = 2e-40 Identities = 104/286 (36%), Positives = 148/286 (51%), Gaps = 7/286 (2%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVP-KVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTMR 438 F K GLGN+++ +D D A+ K+ + A ++ D G+G+DG+I + P + AD MR Sbjct: 5 FTKMHGLGNNYVYIDLFDYAIDEKLYHDLAIQISDVYTGIGSDGMILIHPTTD-ADVGMR 63 Query: 439 IFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDD----GKVKV 606 IFN DGSE + CGNG+RC A++ E + F I T A ++ E+ D +V + Sbjct: 64 IFNKDGSEGKSCGNGLRCTAKYAYE-NGIVTNKKFHIQTKANIVEAEVSVDNNKVNQVTI 122 Query: 607 DMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQ 786 DMG+PIL ++P + + VV + G T + T VSMGNPH V F V Sbjct: 123 DMGEPILARNEIP--MMGNNDVKVVNEPFVVAGETQYITAVSMGNPHGVFF------VDD 174 Query: 787 VDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXX 966 ++ L +GP E FP N EF++V+S + L RVWER Sbjct: 175 IEKAPLETLGPTIEKDMRFPESINVEFIEVVSPTELNFRVWERGSGITQACGTGACAAVV 234 Query: 967 XXXLEGRAERK--CIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 L + + +V L GG L IEW+ED NHV+MTGPAE + G Sbjct: 235 AATLNEKVTKSHPIVVHLAGGDLNIEWKED-NHVWMTGPAEVIATG 279
>Q8AAB7:DAPF_BACTN Diaminopimelate epimerase - Bacteroides thetaiotaomicron| Length = 267 Score = 164 bits (415), Expect = 8e-40 Identities = 103/288 (35%), Positives = 147/288 (51%), Gaps = 5/288 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDR-NFGVGADGVIFVMPGINGADYT 432 + F K G GND+I VD + P PE+ A + + G+G+DG+I + + AD++ Sbjct: 5 IKFTKMHGAGNDYIYVDT--TRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSS-DKADFS 61 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDG----KV 600 MRIFN+DGSE MCGNG RC +++ E L + T +G+ + ++ +G V Sbjct: 62 MRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTAKKEITLDTRSGIKVLKLHVEGGKVTAV 120 Query: 601 KVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKV 780 VDMG P+ EAV D + +T VSMGNPH VTF V Sbjct: 121 TVDMGSPL-------------ETEAVDFG----DQFPFQSTRVSMGNPHLVTF------V 157 Query: 781 LQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXX 960 + + L +IGP+ E++ +FP RTN EF Q++ + ++MRVWER Sbjct: 158 EDITQINLPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACAT 217 Query: 961 XXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 L G A RKC + + GG + IEW E H+ MTGPA VF G + Sbjct: 218 AVAAVLHGLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEM 265
>Q8Y344:DAPF_RALSO Diaminopimelate epimerase - Ralstonia solanacearum (Pseudomonas| solanacearum) Length = 292 Score = 163 bits (412), Expect = 2e-39 Identities = 99/287 (34%), Positives = 138/287 (48%), Gaps = 4/287 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGIN-GADYT 432 LHF K G GNDF+++D + + TPE+ + DR+FGVGAD ++ V D+ Sbjct: 3 LHFTKMHGAGNDFVVLDGIATPID-FTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFR 61 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN DG E E CGNG RCF +F+ + L + ++ G+ +Q DG+V VDM Sbjct: 62 YRIFNHDGGEVEQCGNGARCFVKFVTD-RGLTDKRTIRVEVMNGISTLTMQPDGQVTVDM 120 Query: 613 GQPILHG---PDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVL 783 G P+ P VP LP+ Q L I+G T + VSMGNPH V V Sbjct: 121 GAPVFEAARLPFVPDALPTRVEGRDTQHALQINGRTAWLSTVSMGNPHAVQV------VD 174 Query: 784 QVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXX 963 + + + GP E H +FP R N F+++ R +++RV+ER Sbjct: 175 DAEAFPVREDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAA 234 Query: 964 XXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 G + V GG L I W + V MTGPA VF G++ Sbjct: 235 VAGIRRGLLDSPVKVTTHGGDLTIAWAGEGEPVMMTGPATTVFEGTL 281
>Q58519:DAPF_METJA Diaminopimelate epimerase - Methanococcus jannaschii| Length = 295 Score = 158 bits (399), Expect = 6e-38 Identities = 103/298 (34%), Positives = 150/298 (50%), Gaps = 13/298 (4%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAA----KLCDRNFGVGADGVIFVM-PGING 420 + F K LGND+I+++ D KV EE A K+C R F VGADGVIF+ P + Sbjct: 1 MEFTKMHALGNDYIVINEFDGE--KVKEEEKAEFSRKICRRGFSVGADGVIFIQKPTSDE 58 Query: 421 ADYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDG-- 594 D RIFNSDGSE EMCGNG+RCF++++ E + + K+ T GL + E++ +G Sbjct: 59 YDVRFRIFNSDGSEAEMCGNGIRCFSKYV--YERIMKKNPLKVETKGGLRVSEMEIEGDE 116 Query: 595 --KVKVDMGQPILHGPDVPTKLPSTR-NEAVVQAELAIDG---STWHATCVSMGNPHCVT 756 K+KV MG P D+P + + ++ + EL + + V++GNPH V Sbjct: 117 VKKIKVYMGVPKFKLKDIPMVVDGYKEDDEFLNGELKLKNPYLPKVKLSVVNVGNPHAVI 176 Query: 757 FGSKELKVLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXX 936 F L L IG + EHHE FP R N FV+VL+ + +++ WER Sbjct: 177 FVEDNNIDLDFVREHLDVIGKEIEHHEAFPERINVHFVKVLNPNEIRIVTWERGAGYTTA 236 Query: 937 XXXXXXXXXXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSIVH 1110 G+ + + L GG LEIE ++D VYM G A V+ +++ Sbjct: 237 CGTGTTASVIMAHKLGKTNNRVLAHLDGGDLEIEIKDDG--VYMIGDAVMVYDAKLIN 292
>Q9K060:DAPF_NEIMB Diaminopimelate epimerase - Neisseria meningitidis serogroup B| Length = 283 Score = 157 bits (398), Expect = 8e-38 Identities = 104/293 (35%), Positives = 148/293 (50%), Gaps = 8/293 (2%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEA--AKLCDRNFGVGADGVIFV-MPGINGAD 426 L F K GLGNDF+++D + TPE+A A+ DR GVG D ++ V G D Sbjct: 4 LKFTKMHGLGNDFMVID---AVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVD 60 Query: 427 YTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKV 606 + RIFN+DGSE CGNG RCFARF+A+ + L + T G+I P++ D+G V V Sbjct: 61 FRYRIFNADGSEVGQCGNGARCFARFVAD-KGLTDKKEICVETANGVIFPKLSDNGMVTV 119 Query: 607 DMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQ 786 +MG+P ++P S + + ++ +CV+MGNPH V+ Sbjct: 120 NMGKPKFMPSEIPFVPESGEGDDACIYGVHLESGIQPVSCVNMGNPHA---------VIV 170 Query: 787 VDDLKLSDI---GPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXX 957 VDD++ + + G E H FP R N F+QV+ R+ +++RV+ER Sbjct: 171 VDDVECAPVRETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACA 230 Query: 958 XXXXXXLEGRAERKCIVD--LPGGPLEIEWREDNNHVYMTGPAEAVFYGSIVH 1110 G + V+ LPGG L IEW V MTGPAEAVF G + + Sbjct: 231 AVVAGIRLGLLDEGKTVEVVLPGGTLYIEW-ACGGDVMMTGPAEAVFEGELAY 282
>O27389:DAPF_METTH Diaminopimelate epimerase - Methanobacterium thermoautotrophicum| Length = 286 Score = 157 bits (398), Expect = 8e-38 Identities = 98/290 (33%), Positives = 145/290 (50%), Gaps = 8/290 (2%) Frame = +1 Query: 262 FVKYQGLGNDFIMVD-NRDSAVPK-VTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTM 435 F K GLGND++++D + +P+ PE ++C R F VGADGVIFV P D Sbjct: 4 FSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPASGEGDIRF 63 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQ-DDGKV---K 603 RIFN+DGSE EMCGNG+RCF++F+ + + ++ T AG+ E++ +DG V + Sbjct: 64 RIFNADGSEAEMCGNGIRCFSKFVYD-NAIVRKRRLEVETLAGIKTVELEVEDGAVVSSR 122 Query: 604 VDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVL 783 VDMG +P + L ++G T +S+GNPH + F V Sbjct: 123 VDMGTATFKTDQIPM---DVEEYEFIDRFLPVEGEDIKLTALSVGNPHAIIF------VD 173 Query: 784 QVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXX 963 + + L +GP E+H +FP R N FV+V+S S + M WER Sbjct: 174 DAEGVDLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMACGTGATASV 233 Query: 964 XXXXLEGRAERKCIVDLPGGPLEIEWREDNNHV--YMTGPAEAVFYGSIV 1107 + + +V LPGG L+I+ +D + YM G A VF G ++ Sbjct: 234 IAGVKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGILL 283
>Q9JV69:DAPF_NEIMA Diaminopimelate epimerase - Neisseria meningitidis serogroup A| Length = 283 Score = 157 bits (396), Expect = 1e-37 Identities = 102/290 (35%), Positives = 146/290 (50%), Gaps = 5/290 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEA--AKLCDRNFGVGADGVIFV-MPGINGAD 426 L F K GLGNDF+++D + TPE+A A DR GVG D ++ V G D Sbjct: 4 LKFTKMHGLGNDFMVID---AVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVD 60 Query: 427 YTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKV 606 + RIFN+DGSE CGNG RCFARF+A+ + L + T G+I P++ D+G V V Sbjct: 61 FRYRIFNADGSEVGQCGNGARCFARFVAD-KGLTDKKEICVETANGVIFPKLSDNGMVTV 119 Query: 607 DMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQ 786 +MG+P ++P S + + ++ +CV+MGNPH V + V Sbjct: 120 NMGKPRFMPSEIPFVPESGEGDDACIYGVHLESGIQPVSCVNMGNPHAV------IVVDD 173 Query: 787 VDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXX 966 V+ ++ + G E H FP R N F+Q++SR+ +++RV+ER Sbjct: 174 VECAQVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVV 233 Query: 967 XXXLEGRAERKCIVD--LPGGPLEIEWREDNNHVYMTGPAEAVFYGSIVH 1110 G + V+ LPGG L IEW V MTGPAE VF G + + Sbjct: 234 AGIRLGLLDEGKTVEVILPGGTLYIEW-ACGGDVMMTGPAETVFEGELAY 282
>P54897:DAPF1_ANASP Diaminopimelate epimerase 1 - Anabaena sp. (strain PCC 7120)| Length = 285 Score = 155 bits (392), Expect = 4e-37 Identities = 92/287 (32%), Positives = 151/287 (52%), Gaps = 4/287 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTM 435 + F KY LGND+++++ +D P +TPE+ +C RNFG+G+DG++ A + + Sbjct: 1 MKFYKYHALGNDYLVINPQDLKFP-LTPEKIKIICHRNFGIGSDGILLGPLASTKAQFAL 59 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGK-VKVDM 612 RIFN DGSE E GNG+R F+R++ ++ L F I T G++ I+D GK V+V+M Sbjct: 60 RIFNPDGSEAEKSGNGLRIFSRYLWDM-GLVDEKPFSIETAGGIVESAIKDAGKTVQVEM 118 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 G+ D+P + V+Q ++ +D + ++GNPHC V+ +D Sbjct: 119 GKVSFWSRDIPV---IGDDREVIQEKIFLDEGIFTFCAATIGNPHC---------VILLD 166 Query: 793 DLK---LSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXX 963 D+ + GP FE + +FP RTN +F++VL RS +++ +WER Sbjct: 167 DINSEVARNFGPIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAA 226 Query: 964 XXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 G + K IV +PGG + I+ ++D H+ MT + G + Sbjct: 227 ATAHKLGLCDSKIIVKMPGGDILIQIKDD-FHISMTDSVTKLAQGEL 272
>O32114:DAPF_BACSU Diaminopimelate epimerase - Bacillus subtilis| Length = 284 Score = 152 bits (384), Expect = 3e-36 Identities = 106/292 (36%), Positives = 149/292 (51%), Gaps = 10/292 (3%) Frame = +1 Query: 253 ALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAA-KLCDRNFGVGADGVIFVMPGINGADY 429 + F K GLGN +I V+ + +P+ E A ++ G+G+DG+I + P + A Sbjct: 3 SFRFTKMHGLGNSYIYVNQFEEQLPEEKLSEIAIQVSSVYTGIGSDGMILICPS-DQAPV 61 Query: 430 TMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQ-DDGKVK- 603 MRIFN+DGSE + CGNG+RC A++ E + ++ T SF I T +GL+ E+Q ++GKV Sbjct: 62 KMRIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEET-SFLIETLSGLVKAEVQVENGKVNV 120 Query: 604 --VDMGQPILHGPDVPT---KLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSK 768 VDMG+P L ++P T NE + E+ + G T VSMGNPH V Sbjct: 121 VTVDMGEPRLTKSELPMLDGGEEHTINETMAFGEVELTG-----TAVSMGNPHIV----- 170 Query: 769 ELKVLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXX 948 + ++ L+ +GP E FP N EFV+ ++ L RVWER Sbjct: 171 -FPIADIEQAPLTTLGPVIEKDPRFPEGINVEFVETVNEQELHFRVWERGSGITQACGTG 229 Query: 949 XXXXXXXXXLEGRAERK--CIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 L G ++R V L GG L I W+ DN HV MTGPAE V G Sbjct: 230 ACAAAVASVLNGVSKRNQDITVHLAGGDLVINWK-DNGHVMMTGPAETVCEG 280
>Q9K7F0:DAPF_BACHD Diaminopimelate epimerase - Bacillus halodurans| Length = 286 Score = 152 bits (383), Expect = 4e-36 Identities = 103/292 (35%), Positives = 145/292 (49%), Gaps = 8/292 (2%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDN-RDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYT 432 + F K GLGN +I VD ++ + P A + D+N G+G+DG+I + P + A Sbjct: 1 MKFTKMHGLGNSYIYVDCFKELLKEEELPALAVAVADKNKGIGSDGMILICPS-DRAPVK 59 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQ--DDG---K 597 MR+FN+DGSE + CGNG+RC A+F E ++ T SF + T GL+ + D+G Sbjct: 60 MRVFNNDGSEAKNCGNGLRCVAKFAFEHGYVKET-SFDVETLGGLVKATVHPNDNGLVDT 118 Query: 598 VKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELK 777 V V+MG+P L +P + VV I + T VSMGNPH + F Sbjct: 119 VTVNMGEPRLGRAQIP--MLGEEAAEVVAEPFTIGEKEYRLTAVSMGNPHAIMF------ 170 Query: 778 VLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXX 957 + ++D + +GP E HE FP N EFVQV+S + + RVWER Sbjct: 171 IDTIEDAPVEQVGPLLEKHEAFPDWVNVEFVQVVSPTEIHFRVWERGSGITQACGTGACA 230 Query: 958 XXXXXXLEGRAER--KCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSIV 1107 L G ++ + V L GG L I W E N V MTG AE + G+ V Sbjct: 231 AVVASVLNGFTQKGQEVTVHLLGGDLTISWLE-NGDVLMTGAAETICEGTYV 281
>Q92L46:DAPF_RHIME Diaminopimelate epimerase - Rhizobium meliloti (Sinorhizobium| meliloti) Length = 301 Score = 146 bits (369), Expect = 2e-34 Identities = 94/285 (32%), Positives = 138/285 (48%), Gaps = 2/285 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVM-PGINGADYT 432 + F + GLGN ++VD R +VTP+ A L + + D ++ + P G D Sbjct: 5 VQFARMNGLGNKILVVDMRGRK-DRVTPQAAIAL-NADPATEFDQIMAIHDPKSAGTDAW 62 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 + I NSDGS + CGNG RC + +A G +F HT AGL+ + D+G + VDM Sbjct: 63 IDIVNSDGSMAQACGNGTRCVVQALAAET---GRKAFLFHTVAGLLEAKEHDNGTISVDM 119 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCV-SMGNPHCVTFGSKELKVLQV 789 G+P +P + ID H+ V SMGNPH + + ++ ++ Sbjct: 120 GKPRFGWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYEL 179 Query: 790 DDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXX 969 D GP E+H +FP R N ++ SR + +R WER Sbjct: 180 DRF-----GPLLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVN 234 Query: 970 XXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 GR ER V++PGGPL+IEWRE ++HV MTGPAE + G++ Sbjct: 235 GARTGRTERMVTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTV 279
>Q8FYF0:DAPF_BRUSU Diaminopimelate epimerase - Brucella suis| Length = 303 Score = 146 bits (369), Expect = 2e-34 Identities = 94/281 (33%), Positives = 126/281 (44%), Gaps = 1/281 (0%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTMRI 441 F + GLGN I+ D R A +T A +L + + P G DY + I Sbjct: 7 FARMNGLGNQIIVADMRGRA-DSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAI 65 Query: 442 FNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMGQP 621 N DG++ + CGNG RC + +A G H+F T AG++ DDG + VDMG P Sbjct: 66 INCDGTQAQACGNGTRCVVQALAAE---TGRHAFTFETRAGILTATEHDDGLISVDMGTP 122 Query: 622 ILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCV-SMGNPHCVTFGSKELKVLQVDDL 798 D+P + D H+ + SMGNPH V + K+ V Sbjct: 123 RFDWQDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKD-----VWSY 177 Query: 799 KLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXXXL 978 +L GP E+H +FP R N V S + +R WER Sbjct: 178 ELDKFGPLLENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAAR 237 Query: 979 EGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGS 1101 GR RK V++PGGPL IEWR+D +HV MTGPAE F G+ Sbjct: 238 TGRTGRKVTVNVPGGPLLIEWRDD-DHVMMTGPAEWEFSGT 277
>Q8YJF0:DAPF_BRUME Diaminopimelate epimerase - Brucella melitensis| Length = 303 Score = 146 bits (369), Expect = 2e-34 Identities = 94/281 (33%), Positives = 126/281 (44%), Gaps = 1/281 (0%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTMRI 441 F + GLGN I+ D R A +T A +L + + P G DY + I Sbjct: 7 FARMNGLGNQIIVADMRGRA-DSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAI 65 Query: 442 FNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMGQP 621 N DG++ + CGNG RC + +A G H+F T AG++ DDG + VDMG P Sbjct: 66 INCDGTQAQACGNGTRCVVQALAAE---TGRHAFTFETRAGILTATEHDDGLISVDMGTP 122 Query: 622 ILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCV-SMGNPHCVTFGSKELKVLQVDDL 798 D+P + D H+ + SMGNPH V + K+ V Sbjct: 123 RFDWQDIPLAQAVADTRKIELQVDPADAPVLHSPSIASMGNPHAVFWVDKD-----VWSY 177 Query: 799 KLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXXXL 978 +L GP E+H +FP R N V S + +R WER Sbjct: 178 ELDKFGPLLENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAAR 237 Query: 979 EGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGS 1101 GR RK V++PGGPL IEWR+D +HV MTGPAE F G+ Sbjct: 238 TGRTGRKVTVNVPGGPLLIEWRDD-DHVMMTGPAEWEFSGT 277
>Q89X45:DAPF_BRAJA Diaminopimelate epimerase - Bradyrhizobium japonicum| Length = 291 Score = 145 bits (365), Expect = 5e-34 Identities = 100/292 (34%), Positives = 145/292 (49%), Gaps = 12/292 (4%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVM-PGINGADYTMR 438 F K G+GN+ ++VD RDS KVTP++A + GV D ++ + P ++G + + Sbjct: 9 FAKMNGIGNEIVVVDMRDSTA-KVTPDDARAVASAQGGVPYDQLMVLQKPRLDGTEAFIS 67 Query: 439 IFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLI------IPEIQDDGKV 600 I+N+DGSE CGNG+RC R I E Q T +F+ T AGL+ P++ Sbjct: 68 IYNNDGSEAGACGNGMRCVVRRIFEKTG-QATATFE--TAAGLLNAWQGPAPDLYT---- 120 Query: 601 KVDMGQPILHGPDVPTKLPSTRNEAVVQAELA-IDGSTWHA-TCVSMGNPHCVTFGSKEL 774 VDMG P D+P R+ ++ ++ ID H+ + VSMGNPH + + Sbjct: 121 -VDMGVPKFGWQDIPLA-EEFRDTRYIELQIGPIDNPILHSPSVVSMGNPHAIFW----- 173 Query: 775 KVLQVDDLKLSDI---GPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXX 945 VDD+ D+ GP E+H +FP R N ++ R H+ +R WER Sbjct: 174 ----VDDVNAYDLARFGPLLENHPIFPERANITLAHIVDRDHITIRTWERGAGLTRACGS 229 Query: 946 XXXXXXXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGS 1101 RAER + LPGG L IEWRE ++HV MTG A + G+ Sbjct: 230 AACATAVAAARLKRAERNVEITLPGGKLGIEWRERDDHVLMTGTATFEYEGN 281
>Q87DI4:DAPF_XYLFT Diaminopimelate epimerase - Xylella fastidiosa (strain Temecula1 /| ATCC 700964) Length = 284 Score = 141 bits (355), Expect = 7e-33 Identities = 97/286 (33%), Positives = 133/286 (46%), Gaps = 5/286 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEA--AKLCDRNFGVGADGVIFVMP--GINGA 423 LHF K QG GNDF+++D RD P P+ A A L DR+FG+G D VI + P G+ G Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPP---PDAALVAWLADRHFGIGCDQVIAIEPPRGV-GV 65 Query: 424 DYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVK 603 RI+N+DGS + CGNG RC A ++ + T F I + + Sbjct: 66 FAAYRIWNADGSAAQQCGNGARCVAAWLVR-DGSVATEHFLIDSPVQTHSVRCIGKDEYA 124 Query: 604 VDMGQPILHGPDVPTK-LPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKV 780 V+MG P+ +P P+ E V L++ G VSMGNPH V ++V Sbjct: 125 VEMGLPVFEPERIPLSGFPNALGEYV----LSLQGEVLCCGAVSMGNPHAV------VEV 174 Query: 781 LQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXX 960 +D + IGP + H FP N FVQV+ +++RV+ER Sbjct: 175 DLIDVAPVERIGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAA 234 Query: 961 XXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 GR R V LPGG L ++W V ++GPA VF G Sbjct: 235 AVVLMQRGRVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDG 280
>Q8PPQ1:DAPF_XANAC Diaminopimelate epimerase - Xanthomonas axonopodis pv. citri| Length = 284 Score = 141 bits (355), Expect = 7e-33 Identities = 99/283 (34%), Positives = 130/283 (45%), Gaps = 2/283 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV-MPGINGADYT 432 L F K G GNDF+++D RD P AA+L DR+FG+G D ++ + P GA Sbjct: 10 LRFTKMHGAGNDFVVLDLRDGTPPP-DAALAAQLADRHFGIGCDQILTIEAPRSEGAAAA 68 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 I+NSDGS CGNG RC A ++ QG F I + A E D + V M Sbjct: 69 YGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGER-FIIDSPATAHAVERLDGDRYAVAM 127 Query: 613 GQPILHGPDVPTKLPSTR-NEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQV 789 G P PT++P A + L + G T VSMGNPH V ++V +V Sbjct: 128 GVPQFE----PTQIPLAGFAHARDEYALPVHGETVRFGAVSMGNPHAV------VEVGRV 177 Query: 790 DDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXX 969 D + +G + + FP N F QV+ H+++RV+ER Sbjct: 178 DAAPVERVGALLQQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAAV 237 Query: 970 XXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 GR ER V LPGG L I W D V M+GPA VF G Sbjct: 238 LMQRGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDG 280
>Q9PD98:DAPF_XYLFA Diaminopimelate epimerase - Xylella fastidiosa| Length = 284 Score = 139 bits (349), Expect = 4e-32 Identities = 96/286 (33%), Positives = 135/286 (47%), Gaps = 5/286 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEA--AKLCDRNFGVGADGVIFVMP--GINGA 423 LHF K QG GNDF+++D RD P P+ A A L DR+FG+G D VI + P G+ G Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPP---PDVALVAWLADRHFGIGCDQVIAIEPPRGV-GV 65 Query: 424 DYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVK 603 RI+N+DGS + CGNG RC A ++ ++ H F I + + + Sbjct: 66 FAAYRIWNADGSAAQQCGNGARCVAAWLVRDGSVADEH-FLIDSPVQAHLVRCIGKDEYA 124 Query: 604 VDMGQPILHGPDVPTK-LPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKV 780 V+MG P+ +P P+ E V L++ G VSMGNPH V ++V Sbjct: 125 VEMGLPVFEPERIPLSGFPNACGEYV----LSLQGEVLRCGAVSMGNPHAV------VEV 174 Query: 781 LQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXX 960 +D + IG + H FP N FVQV+ +++RV+ER Sbjct: 175 DLIDVAPVERIGSLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAA 234 Query: 961 XXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 GR R V LPGG L ++W V ++GPA+ VF G Sbjct: 235 AVVLMQRGRVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPAKCVFDG 280
>Q8P548:DAPF_XANCP Diaminopimelate epimerase - Xanthomonas campestris pv. campestris| Length = 284 Score = 138 bits (348), Expect = 5e-32 Identities = 98/283 (34%), Positives = 131/283 (46%), Gaps = 2/283 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV-MPGINGADYT 432 L F K G GNDF+++D R+ P AA+L DR+FGVG D ++ + P A Sbjct: 10 LRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAA 68 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RI+NSDGS + CGNG RC A ++ QG F I + E D G V M Sbjct: 69 YRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGD-VFTIDSPFTAHRVERLDAGTYSVAM 127 Query: 613 GQPILHGPDVPTKLPSTR-NEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQV 789 G P PT++P A + L + G T VSMGNPH V ++V +V Sbjct: 128 GVPQFE----PTQIPLAGFAHARDEYALPVHGETVRFGAVSMGNPHAV------VEVGRV 177 Query: 790 DDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXX 969 D + +G + + FP N F QV+ +H+++RV+ER Sbjct: 178 DAAPVERVGALLQQNAAFPESVNVGFAQVVDPAHVRLRVYERGVGETLACGSGACAAAVV 237 Query: 970 XXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 GR ER V LPGG L I W + V M+GPA VF G Sbjct: 238 LMHRGRVERDVRVSLPGGELRIRWAGEQAQVVMSGPAVFVFDG 280
>Q9A280:DAPF_CAUCR Diaminopimelate epimerase - Caulobacter crescentus (Caulobacter| vibrioides) Length = 288 Score = 137 bits (344), Expect = 1e-31 Identities = 97/289 (33%), Positives = 127/289 (43%), Gaps = 8/289 (2%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDR-----NFGVGADGVIFV-MPGINGA 423 F+K GLGNDF+++ A TPE+ + R G+G D VI + P GA Sbjct: 5 FLKMNGLGNDFVVIQTLTEAFDP-TPEQIRAIAKRPGVDGKGGIGCDQVIAIDPPRAEGA 63 Query: 424 DYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVK 603 +R +NSDG CGNG RC A + + G + T AG + D V Sbjct: 64 SAYVRFWNSDGEVAGACGNGTRCVAWLLMQSA---GKDAVAFDTVAGRLSGVAAGDKLVT 120 Query: 604 VDMGQPILHGPDVPTKLPSTRNEAVVQAELA-IDGSTWHA-TCVSMGNPHCVTFGSKELK 777 VDMG P L +P L N V+ ++ ID H CVSMGNPH V F + Sbjct: 121 VDMGPPGLDWTQIP--LAEEMNTERVELQVGPIDAPLVHTPVCVSMGNPHVVFFVDAPV- 177 Query: 778 VLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXX 957 DD G EHH +FP N F + SR H++++VWER Sbjct: 178 ---TDDFARGT-GSLVEHHPLFPEGVNVGFAHIASRDHIRLKVWERGAGLTQACGTGACA 233 Query: 958 XXXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 G +RK V+ G L IEWRE + HV MTGP + G + Sbjct: 234 AQVAAVRRGLTDRKARVEFDTGSLTIEWRESDGHVIMTGPITMEYAGKL 282
>Q46185:DAPF_CLOPE Diaminopimelate epimerase - Clostridium perfringens| Length = 272 Score = 132 bits (333), Expect = 3e-30 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 5/287 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTM 435 + F K G GNDFI++++ ++ E A K+C R FG+GADG++ V N D M Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVRKNEN-CDIEM 59 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGL--IIPEIQDDGKVK-- 603 I NSDGS MCGNG+RCFA+++ E + + + TG G+ I EI++D KVK Sbjct: 60 VIINSDGSYAAMCGNGIRCFAKYVYE-KGIVKKDVLDVLTGDGVKRIFLEIEND-KVKTI 117 Query: 604 -VDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKV 780 V+MG G P +P+ +E +++ ++++ + T + MG PH + F ++ + Sbjct: 118 NVNMG----FGDFKPKNIPALCDEEIIEKKVSVGNGNFEITSLLMGVPHTIIFEEEKYPI 173 Query: 781 LQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXX 960 + G E +E+FP TN F +V+ R+ +++R WER Sbjct: 174 ---------ECGRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCAS 224 Query: 961 XXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGS 1101 G +++ V +PGG L++ +D V M G A + G+ Sbjct: 225 VIAANKLGLVDKEVKVIVPGGELKVNIEDDG--VKMIGNASFICDGT 269
>Q8UC03:DAPF_AGRT5 Diaminopimelate epimerase - Agrobacterium tumefaciens (strain C58 /| ATCC 33970) Length = 299 Score = 132 bits (333), Expect = 3e-30 Identities = 94/289 (32%), Positives = 129/289 (44%), Gaps = 6/289 (2%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVM-PGINGADYT 432 + F K GL N ++VD R VTP A L + N D ++ + P + G D Sbjct: 5 VEFAKMNGLANKILVVDMRGRK-DMVTPAAAIAL-NSNPATQFDQIMAIHDPRVGGTDAF 62 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 + I N DG++ + CGNG RC + ++ G SF T AG++ +DG + VDM Sbjct: 63 IDILNCDGTKAQACGNGTRCVVQALSSET---GKTSFTFQTVAGILNAVEHEDGMISVDM 119 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCV-SMGNPHCVTFGSKELKVLQV 789 G P D+P + ID H+ V SMGNPH + + ++ Sbjct: 120 GLPRFRWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMTFD- 178 Query: 790 DDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXX 969 L GP E+H MFP + N QV+S S L+ R WER Sbjct: 179 ----LERFGPLLENHPMFPEKANITLAQVISDSALRTRTWERGAGLTLACGSAACASAVS 234 Query: 970 XXLEGRAERKCIVDLPGG----PLEIEWREDNNHVYMTGPAEAVFYGSI 1104 GR RK +D+ PL I+WRED NHV MTGPAE + GS+ Sbjct: 235 AARTGRTGRKVTIDVASSPVRVPLTIDWRED-NHVVMTGPAEWEWSGSV 282
>O29511:DAPF_ARCFU Diaminopimelate epimerase - Archaeoglobus fulgidus| Length = 280 Score = 127 bits (320), Expect = 9e-29 Identities = 95/284 (33%), Positives = 130/284 (45%), Gaps = 5/284 (1%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAV--PKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTM 435 F K G GNDF+++D + + + P +C RNFGVGADG +FV P AD Sbjct: 5 FTKMHGNGNDFVLIDEFEGVIVGEEEKPRFVRAVCHRNFGVGADGALFVQPS-QKADVRF 63 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGK--VKVD 609 R FNSDGSE MCGNG+RCF+R++ E E G ++ T AG++ E++ + VKVD Sbjct: 64 RYFNSDGSEAAMCGNGIRCFSRYVVE-EGYAG-ERLRVETLAGILELEVKRENGWWVKVD 121 Query: 610 MGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQV 789 MG+P ++P K V E+ DG + + G PH F + Sbjct: 122 MGKPKFGREEIPAKTD------VWGYEVEHDGRKFRIYAANTGVPHVAVF-------VDS 168 Query: 790 DDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXX 969 D + + K + E+FP TN F +V + +R +ER Sbjct: 169 LDFDIVPLARKIRYSEIFPEGTNVNFAKV-DGDTITVRTYERGVEGETLSCGTGSVAVAA 227 Query: 970 XXLE-GRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 G K V GG L+IE ED YMTG A VF G Sbjct: 228 IANRLGLTGSKVDVVTKGGLLKIELTEDT--AYMTGGASRVFDG 269
>P59582:DAPF_BUCBP Diaminopimelate epimerase - Buchnera aphidicola subsp. Baizongia| pistaciae Length = 286 Score = 125 bits (315), Expect = 3e-28 Identities = 86/285 (30%), Positives = 133/285 (46%), Gaps = 4/285 (1%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGIN-GADYT 432 + F K GLGNDFI+++ VT L +R G+G D ++ V N D+ Sbjct: 12 IKFSKMHGLGNDFIIINAMMQKTFPVTSNIIQNLSNRYTGIGFDQLLLVENSKNVNIDFH 71 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 RIFN++G+E CGNG RCFA F+ ++ L + + T +I + ++G V VDM Sbjct: 72 YRIFNANGTEVSQCGNGARCFALFVL-LKKLTKKRTLYVSTNTTTLILNVLNNGNVCVDM 130 Query: 613 GQPILHGPDVPTKLPSTRNEAVVQAEL---AIDGSTWHATCVSMGNPHCVTFGSKELKVL 783 G P KL + E +++ L + VS+GNPHC+ + V Sbjct: 131 GVPCF-------KLKNIFGENIIENSLHSIKFVNKIINYDLVSIGNPHCIIY------VN 177 Query: 784 QVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXX 963 + + IG H++FP N FV+VLS++ + +RV+ER Sbjct: 178 NLKKYPVKKIGFYLSTHKIFPEGINVNFVEVLSKNEIALRVYERGVGETLACGSGACASV 237 Query: 964 XXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 +G + V+L G L+I W+ + +YMTGPA V+ G Sbjct: 238 ALGIQQGLLFNEVQVNLLNGILKINWKGGSEKLYMTGPAVHVYDG 282
>Q8K901:DAPF_BUCAP Diaminopimelate epimerase - Buchnera aphidicola subsp. Schizaphis| graminum Length = 284 Score = 117 bits (292), Expect = 2e-25 Identities = 81/291 (27%), Positives = 139/291 (47%), Gaps = 3/291 (1%) Frame = +1 Query: 241 ESERALHFVKYQGLGNDFIMVDN--RDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGI 414 + ++ ++F K GLGNDF+++++ +D + K E L +RN GVG D ++ + Sbjct: 6 KKKKKIYFSKMHGLGNDFMVIESIKQDFILTKSIIEN---LSNRNTGVGFDQLLLIEKSN 62 Query: 415 NGA-DYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDD 591 N D+ RIFN++G+E E CGNG RC F+ ++ L + T I + D Sbjct: 63 NFKFDFHYRIFNANGNEVEQCGNGARCVGLFLF-LKGLINKRKIMLSTNKKNISIKFMSD 121 Query: 592 GKVKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKE 771 ++V+M +P ++ N V+ + + VS+GNPHCV Sbjct: 122 NNIQVNMNEPSFKLEEISISKKIVLNNFSVK----LINKNLKCSLVSIGNPHCV------ 171 Query: 772 LKVLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXX 951 +KV +++ + IG E + +FP N F++V++++H+++RV+ER Sbjct: 172 IKVESINNAPVKKIGELLEKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGA 231 Query: 952 XXXXXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 + VDL GG L I+W+ N +YM G A ++ G I Sbjct: 232 CAAVAVGIAKNLLCDNVKVDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYI 282
>Q98EB6:DAPF_RHILO Diaminopimelate epimerase - Rhizobium loti (Mesorhizobium loti)| Length = 294 Score = 116 bits (291), Expect = 2e-25 Identities = 88/284 (30%), Positives = 130/284 (45%), Gaps = 4/284 (1%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGIN-GADYTMR 438 F K G+GN+ I+ D R A +VT A L + + D ++ + G Y + Sbjct: 7 FAKMNGIGNEIIVADMRGRA-DQVTAAAALAL-NGDAATRFDQIMAIHDARTPGTAYYVD 64 Query: 439 IFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMGQ 618 I NSDG+ + CGNG+RC + +A G +F T AG++ DG + VDMG Sbjct: 65 ILNSDGTSAQACGNGMRCVVQALAAET---GQKTFTFETRAGILNAREHADGTISVDMGM 121 Query: 619 PILHGPDVPTKLPSTRNEAVVQAELA-IDGSTWHA-TCVSMGNPHCVTFGSKELKVLQVD 792 P ++P R+ +++ ++ ID H+ + VSMGNPH + + ++ V Sbjct: 122 PHFGWQEIPLA-EEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRD-----VW 175 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 +L GP E+H +FP R N QV S + +R WER Sbjct: 176 SYELERFGPLLENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGSAACASVVAA 235 Query: 973 XLEGRAERKCIVDLP-GGPLEIEWREDNNHVYMTGPAEAVFYGS 1101 R R + P GG L +EW DN+HV +TG AE F GS Sbjct: 236 ARTRRTGRSVNLLTPGGGTLHVEWL-DNDHVILTGAAEWEFSGS 278
>P57649:DAPF_BUCAI Diaminopimelate epimerase - Buchnera aphidicola subsp. Acyrthosiphon| pisum (Acyrthosiphon pisum symbiotic bacterium) Length = 284 Score = 115 bits (289), Expect = 3e-25 Identities = 82/289 (28%), Positives = 135/289 (46%), Gaps = 1/289 (0%) Frame = +1 Query: 241 ESERALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGING 420 ++++ ++F K GL NDF++++ V +T KL +R G+G D ++ V + Sbjct: 6 KNKKKINFSKMHGLKNDFMVINCIKKNV-FLTSHIIKKLSNRYTGIGFDQLLLVEKSNSL 64 Query: 421 -ADYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGK 597 D+ RIFN++G+E E CGNG RCF F+ ++ L I T + E + Sbjct: 65 LTDFHYRIFNANGNEVEQCGNGARCFGLFLL-LKGLTNKKKILISTKKKPLTIEFLTENM 123 Query: 598 VKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELK 777 +KV+M +P L S +N + + VS+GNPHC+ +K Sbjct: 124 IKVNMNEPDFKF----YNLSSLQNVLDNNFSIKLMNENLICNLVSIGNPHCI------IK 173 Query: 778 VLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXX 957 V V + ++ IG E + +FP N F+++L++ H+K+RV+ER Sbjct: 174 VQSVKNAPVNIIGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACA 233 Query: 958 XXXXXXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 + V+L GG L I W+ +YM GPA+ V+ G I Sbjct: 234 AVAVGIAQKLLSDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYI 282
>O67693:DAPF_AQUAE Diaminopimelate epimerase - Aquifex aeolicus| Length = 279 Score = 112 bits (280), Expect = 4e-24 Identities = 94/301 (31%), Positives = 136/301 (45%), Gaps = 13/301 (4%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAA-------KLCDRNFGVGADGVIFVM-PG 411 + F K QG GNDF+++D+RD + E K+C + GVGADG+I + P Sbjct: 1 MEFWKLQGSGNDFVVIDDRDEKLESFLKERGVSKEDFVRKVCAFHTGVGADGLILIKNPD 60 Query: 412 INGADYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDD 591 D+ FNSDGS EMCGNG RC RF E + G + + T AG+I E+ ++ Sbjct: 61 NPENDFKWEFFNSDGSVAEMCGNGSRCAVRFAYE-RGIVG-NKVRFETLAGVIKAEVYEN 118 Query: 592 G-KVKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSK 768 G KVKV + P P+ T L +DG ++ G PH V Sbjct: 119 GRKVKVQLTPP--SKPEEKT--------------LTVDGEEVIGVFINTGVPHFV----- 157 Query: 769 ELKVLQVDDLKLSDIGPKFEHHEMF-PARTNTEFVQVLSRSHLKMRVWER-XXXXXXXXX 942 + V V+ + + +G HE F P TN FVQ +S +K+R +ER Sbjct: 158 -VPVEDVEKVNVIKLGRAIRFHEEFQPKGTNVNFVQPVSEDTIKVRTYERGVESETLACG 216 Query: 943 XXXXXXXXXXXLEGRAERK--CIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSIVH*V 1116 L+G ++K ++ G L I++ ED V++TG VF G + V Sbjct: 217 TGATACAIVSYLKGLVKKKPVNVLTRSGEVLTIDFSEDLKEVFLTGSVYKVFEGRLSEEV 276 Query: 1117 L 1119 L Sbjct: 277 L 277
>Q8NP73:DAPF_CORGL Diaminopimelate epimerase - Corynebacterium glutamicum| (Brevibacterium flavum) Length = 277 Score = 108 bits (269), Expect = 7e-23 Identities = 92/295 (31%), Positives = 133/295 (45%), Gaps = 14/295 (4%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPG-------ING 420 F K NDFI++ + D+ + +TPE LCDR G+GADG++ V+ ++ Sbjct: 7 FAKGHATENDFIIIPDEDARLD-LTPEMVVTLCDRRAGIGADGILRVVKAADVEGSTVDP 65 Query: 421 ADYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGL----IIPEIQD 588 + + M N+DGS EMCGNGVR FA ++ L SF I T AG+ I+ Q Sbjct: 66 SLWFMDYRNADGSLAEMCGNGVRLFAHWLYS-RGLVDNTSFDIGTRAGVRHVDILQADQH 124 Query: 589 DGKVKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPH--CVTFG 762 +V+VDMG P + G + I+G + V MGNPH CV G Sbjct: 125 SAQVRVDMGIPDVTG----------------LSTCDINGQVFAGLGVDMGNPHLACVVPG 168 Query: 763 SKELKVLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXX 942 L + D++L P F+ E FP N E V L + MRVWER Sbjct: 169 ---LSASALADMELR--APTFD-QEFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCG 222 Query: 943 XXXXXXXXXXXLE-GRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 + G E V +PGG +E++ +D + +TGP+ + G + Sbjct: 223 TGTVAAACAALADAGLGEGTVKVCVPGGEVEVQIFDDGS--TLTGPSAIIALGEV 275
>O69969:DAPF_STRCO Diaminopimelate epimerase - Streptomyces coelicolor| Length = 289 Score = 103 bits (256), Expect = 2e-21 Identities = 90/295 (30%), Positives = 123/295 (41%), Gaps = 16/295 (5%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVM-----PGING-- 420 F+K G NDF++V + ++A+ + P A LCDR G+G DG++ V+ P G Sbjct: 7 FLKGHGTENDFVIVPDPENALD-LPPAAVAALCDRRAGLGGDGLLHVVRSAAHPEARGMA 65 Query: 421 --ADYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDG 594 A++ M N DGS EMCGNGVR FAR++ ++ + T G+ I +G Sbjct: 66 AEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVT-EGDLAVATRGGVKTVHIAKNG 124 Query: 595 KVKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKEL 774 V V MG+ +L DV E+++ W A V+MGNPH V F Sbjct: 125 DVTVGMGRALLPAGDV---------------EVSVGEREWPARNVNMGNPHAVAF----- 164 Query: 775 KVLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXX 954 V +D P +P N EFV H+ MRV ER Sbjct: 165 -VADLDHAGDLYAPPSHAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGAC 223 Query: 955 XXXXXXXLEGRAERKC-------IVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 + VD+PGG L I R D + MTGPA V G Sbjct: 224 AVAVATARRDGLDPAATGTPATYTVDVPGGTLVITERPD-GEIEMTGPAVIVAEG 277
>Q6AE05:DAPF_LEIXX Diaminopimelate epimerase - Leifsonia xyli subsp. xyli| Length = 292 Score = 101 bits (251), Expect = 9e-21 Identities = 86/313 (27%), Positives = 139/313 (44%), Gaps = 30/313 (9%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFV----------- 402 LHF K QG GNDF++ + D +P ++ + A++CDR+FGVGADGVI Sbjct: 4 LHFTKGQGTGNDFVLYADPDGTLP-LSAGQIAEICDRHFGVGADGVIRAVRSKRLPEGAE 62 Query: 403 -MPGINGADYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPE 579 + A++ M +N+DGS EMCGNG+R + R++ E +Q + G + + Sbjct: 63 ALADDEAAEWFMDYYNADGSAAEMCGNGIRVYVRYLIESRLVQLADGDTLPIGTRSGVRD 122 Query: 580 IQ--------DDGKVKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSM 735 +Q D G+ ++ G+P++ ++P V + L ID + Sbjct: 123 VQRTLSGFQVDLGRWRLAGGEPLVRAKELP----------VARLGLGID----------L 162 Query: 736 GNPHCVTFGSKELKVLQVDDLKLSDIGPKFEHHEMFPARTNTEFV---QVLSR---SHLK 897 GNPH V + E ++ D + + P + N EFV + L + ++ Sbjct: 163 GNPHVVVALADESELESADLTYIPHLEPAPQ------GGANVEFVVPHEPLVKDGVGRIR 216 Query: 898 MRVWER--XXXXXXXXXXXXXXXXXXXXLEGRAERKCIVDLPGGPLEIEW--REDNNHVY 1065 MRV ER A + VD+PGG + + ED HV Sbjct: 217 MRVHERGSGETLSCGTGAAAAALAVRHWAGENAPGQWWVDVPGGTVGVRMFPTEDGEHVA 276 Query: 1066 MTGPAEAVFYGSI 1104 ++GPAE V+ G++ Sbjct: 277 LSGPAELVYTGAL 289
>Q8FPE1:DAPF_COREF Diaminopimelate epimerase - Corynebacterium efficiens| Length = 283 Score = 100 bits (249), Expect = 1e-20 Identities = 91/306 (29%), Positives = 136/306 (44%), Gaps = 20/306 (6%) Frame = +1 Query: 247 ERALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVM------- 405 ++ + F K NDFI++ + D + +T +E +LCDR G+GADGV+ V+ Sbjct: 2 KKEIAFAKGHATENDFIIIHDPDGTID-LTADEVTRLCDRRAGLGADGVLRVVRAGELGV 60 Query: 406 --PGINGADYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAG----L 567 PG++ + M N+DGS EMCGNGVR FA ++A L T F I T AG Sbjct: 61 QTPGVDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLA-AHQLVDTTDFTIGTRAGARSVT 119 Query: 568 IIPEIQDDGKVKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPH 747 ++ +DD V+VDMG + G + I + V +GNPH Sbjct: 120 VLSADRDDAVVRVDMGPAAVTG----------------ISTCMIADQPFAGMGVDLGNPH 163 Query: 748 --CVTFGSKELKVLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRS----HLKMRVW 909 CV G L + ++ L P F+ FP N E V L+ + MRVW Sbjct: 164 LACVVPG---LTPAALKNIALE--APVFD-TAFFPRGVNVELVTELADGLDDPAIHMRVW 217 Query: 910 ERXXXXXXXXXXXXXXXXXXXXLE-GRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEA 1086 ER + G+A V +PGG +E+ RE+ + +TGP+ Sbjct: 218 ERGVGETRSCGTGTVAAARAALADAGQAVGTVTVYVPGGAVEVGIREETS--TLTGPSRI 275 Query: 1087 VFYGSI 1104 + G++ Sbjct: 276 IATGTV 281
>Q97FV2:DAPF_CLOAB Diaminopimelate epimerase - Clostridium acetobutylicum| Length = 333 Score = 100 bits (248), Expect = 2e-20 Identities = 72/229 (31%), Positives = 117/229 (51%), Gaps = 9/229 (3%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVD---NRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGAD 426 ++ +K G GNDFI++D N + + + A + C+R +G DG++FV + D Sbjct: 14 INILKCHGTGNDFILIDEYNNNYNLDDETRRDIAIQACNRAKFIGGDGILFVQKS-DICD 72 Query: 427 YTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDD----- 591 MRIFN+DGSE EMCGNG+RC R++ E+ N + S +I T ++Q+D Sbjct: 73 AKMRIFNADGSEAEMCGNGLRCVGRYVIEMLNKE---SVEIETLKSKYWVKLQEDIYEGV 129 Query: 592 GKVKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKE 771 VK+D+ L DV T + + E ++ ++ + T VS+ NPH + Sbjct: 130 KTVKIDIKSVSL---DVKTLPLNYKKEKLIFDKIPELSDEFDFTAVSITNPHLIAI---- 182 Query: 772 LKVLQVDDLKLSDIGPKFEH-HEMFPARTNTEFVQVLSRSHLKMRVWER 915 V +D KL +IG K + P N FV+V+ S++ ++ +ER Sbjct: 183 --VNNIDSDKLVEIGKKGNSTKSVLPQGVNVSFVKVIDSSNIYVKTYER 229
>Q9ZDB7:DAPF_RICPR Diaminopimelate epimerase - Rickettsia prowazekii| Length = 270 Score = 92.4 bits (228), Expect = 4e-18 Identities = 63/220 (28%), Positives = 101/220 (45%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTM 435 ++FVK GLGNDF++V+ RD A A + DR+ G+G D I N YTM Sbjct: 5 INFVKMHGLGNDFVIVNKRDLATSYNLSHLAKNMADRHTGIGCDQCIIYEE--NNDFYTM 62 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMG 615 I+N DGS ++CGN +RC A+ I G + + G ++ ++ K+ V++G Sbjct: 63 IIYNIDGSSAKLCGNAIRCLAKLIYLD---TGKQNITVMVGKKKLLCNVKAANKISVNVG 119 Query: 616 QPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDD 795 + +P++ + +L CV +GNPH + F E + + Sbjct: 120 NVSFNETWMPSRDKIWKFAERYMLDLK------EMLCVDIGNPHLIIFSKLEPQDKTI-- 171 Query: 796 LKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWER 915 IG K + E+F N F +V + + + VWER Sbjct: 172 -----IGQKLQAKELFADGVNVNFAEV-KDNKIYLSVWER 205
>Q8KAX9:DAPF_CHLTE Diaminopimelate epimerase - Chlorobium tepidum| Length = 257 Score = 92.4 bits (228), Expect = 4e-18 Identities = 73/280 (26%), Positives = 115/280 (41%), Gaps = 4/280 (1%) Frame = +1 Query: 277 GLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTMRIFNSDG 456 G GNDFI++DNR +T E+ +C R G+GADG+I + AD+ M N+DG Sbjct: 3 GAGNDFIVIDNRQGLF-NLTHEQVRAMCTRRTGIGADGLILLETS-ETADFRMNYHNADG 60 Query: 457 SEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMGQPILHGP 636 MCGNG RC F + ++ G E+ + V++ M Sbjct: 61 FPGTMCGNGGRCAVWFAHLIGIRPTGKHYRFEAGPSTYEAEVTGEESVRLHM-------- 112 Query: 637 DVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDDLKLSDIG 816 LP + +QA W+ V G+PH + + V +D L + G Sbjct: 113 -----LPPSDFRDGLQA------GAWNCHFVDTGSPHAIAY------VNNLDQLDVLTEG 155 Query: 817 PKFEHH-EMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXXXLEGRAE 993 H+ E+FP TN F+++ + L +R +ER Sbjct: 156 GNIRHNKELFPDGTNVNFLEITAPDALSIRTFERGVEDETLACGTGTVAAALMSFRLGKV 215 Query: 994 RKCIVDL---PGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 +V + G L + + E + +Y+ GPA AV+ G+I Sbjct: 216 TSSLVRVKVKSGETLMVGFNEMMDEIYLEGPARAVYRGTI 255
>Q68WW4:DAPF_RICTY Diaminopimelate epimerase - Rickettsia typhi| Length = 270 Score = 91.7 bits (226), Expect = 7e-18 Identities = 68/220 (30%), Positives = 100/220 (45%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTM 435 ++FVK GLGNDF++V RD A + A + DR+ G+G D I N YTM Sbjct: 5 INFVKMHGLGNDFVIVHKRDLATVCNLSQLAKNMADRHTGIGCDQCIIYEEYNN--VYTM 62 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMG 615 I+N DGS ++CGN RC A+ I G I G ++ ++ K+ V++G Sbjct: 63 IIYNIDGSNAKLCGNATRCLAKLIYLD---TGKKDITIMVGKKKLLCNVEAANKISVNVG 119 Query: 616 QPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDD 795 + T +PS +D CV +GNPH + F L+ D Sbjct: 120 NVSFN----ETWMPSRDRIWAFAERYMLD--LKETMCVDIGNPHLIIFSK-----LEPQD 168 Query: 796 LKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWER 915 K+ IG K + E+F N F +V + + + VWER Sbjct: 169 QKI--IGQKLQAKELFVDGVNVNFAEV-KDNKIYLSVWER 205
>Q4ULS7:DAPF_RICFE Diaminopimelate epimerase - Rickettsia felis (Rickettsia azadi)| Length = 270 Score = 91.7 bits (226), Expect = 7e-18 Identities = 74/283 (26%), Positives = 123/283 (43%), Gaps = 2/283 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTM 435 ++FVK GLGNDF++V+ RD + + A + DR+ G+G D F++ + Y M Sbjct: 5 INFVKMHGLGNDFVVVNKRDLSSSYDLSQLAKNMADRHTGIGCDQ--FIIYEEHDDFYEM 62 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMG 615 I+N DGS ++CGN RC A+ I G + G ++ ++D+ + V++G Sbjct: 63 IIYNIDGSSAKLCGNATRCLAKLIYLD---TGKKDITVMVGNKKLLCNVEDENNISVNVG 119 Query: 616 QPILHGPDVPT--KLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQV 789 + + +P+ K+ ++ + I CV +GNPH V F L+ Sbjct: 120 KVSFNEVWMPSRDKIWELAERYMIDLKETI--------CVDIGNPHLVIFSK-----LEP 166 Query: 790 DDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXX 969 D K+ +G K + E+F N F +V + + + VWER Sbjct: 167 QDQKI--VGEKLQAKELFADGVNVNFAEV-KDNKIYLSVWERGAGLTLACGSGACGSFAA 223 Query: 970 XXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 G V G L + +E+N ++ M G A V G Sbjct: 224 GLKLGFIHSPSTVVFKYGSLTM--KEENGNIIMQGAATLVARG 264
>Q1RIT1:DAPF_RICBR Diaminopimelate epimerase - Rickettsia bellii (strain RML369-C)| Length = 269 Score = 90.9 bits (224), Expect = 1e-17 Identities = 73/283 (25%), Positives = 120/283 (42%), Gaps = 2/283 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTM 435 ++FVK GLGNDF++++ +D + A + R+ G+G D F++ Y M Sbjct: 5 INFVKMHGLGNDFVIINKKDLTGTYDLSQLAKSMAKRHLGIGCDQ--FIIYEEQNDSYEM 62 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMG 615 I+N DGS ++CGN RC A+ I G + G ++ + D+ + V++G Sbjct: 63 IIYNIDGSSAKLCGNATRCLAKLIYLD---TGKKDITVVVGNKKLLCHVIDENNISVNVG 119 Query: 616 QPILHGPDVPT--KLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQV 789 + +P+ K+ ++ + I CV +GNPH V F EL+ Sbjct: 120 GVSFNESWMPSRDKIWEFAERYMIDLKETI--------CVDVGNPHLVIFSKLELQ---- 167 Query: 790 DDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXX 969 D K+ +G K + +F N F +V + + + VWER Sbjct: 168 -DQKI--VGEKLQDKALFADGVNVNFAEVRD-NKIYLSVWERGSGLTLACGSGACGSFAA 223 Query: 970 XXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 G C V G L + +E+N ++ M GPA V G Sbjct: 224 GLKLGFIHSPCEVVFKHGSLIM--KEENGNIIMQGPASLVAKG 264
>Q92I41:DAPF_RICCN Diaminopimelate epimerase - Rickettsia conorii| Length = 270 Score = 89.0 bits (219), Expect = 4e-17 Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 1/282 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTM 435 ++FVK GLGNDF++V+ RD + + A + +R+ G+G D F++ + Y M Sbjct: 5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQ--FIIYEEHNDFYEM 62 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMG 615 I+N DGS ++CGN RC A+ I G + G ++ + D+ + V++G Sbjct: 63 IIYNIDGSSAKLCGNATRCLAKLIYLD---TGKQDITVMVGNKKLLCNVNDENNISVNVG 119 Query: 616 QPILHGPDVPTKLPSTRNEAVVQAE-LAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVD 792 + +P +R++ AE ID CV +GNPH V F L+ Sbjct: 120 SVSFNEAWMP-----SRDKVWEFAERYMID--LKETICVDIGNPHVVIFSK-----LEPQ 167 Query: 793 DLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXXX 972 D K+ +G + + E+F N F +V + + + VWER Sbjct: 168 DQKI--VGERLQAKELFADGVNVNFAEV-KDNKIYLSVWERGAGLTLACGSGACGSFAAG 224 Query: 973 XLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 G + G L + +E+N ++ M G A V G Sbjct: 225 LKRGFIHSPSTIVFKHGNLTM--KEENGNIIMQGAATLVARG 264
>Q9PMD8:DAPF_CAMJE Diaminopimelate epimerase - Campylobacter jejuni| Length = 249 Score = 85.5 bits (210), Expect = 5e-16 Identities = 70/220 (31%), Positives = 102/220 (46%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTM 435 + F KY GNDF+ + N D + A +LC+R G+GADG I ++P D+ Sbjct: 1 MKFYKYCASGNDFV-ITNADRKEDRSAL--AKELCNRYEGIGADGFIVILPH-EKYDFEW 56 Query: 436 RIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMG 615 +N+DGS MCGNG R A F + + SF TGAG+I ++ D KV+V +G Sbjct: 57 EFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFL--TGAGIIKAKVNQD-KVEVSLG 113 Query: 616 QPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDD 795 K+ S +N EL G TW + G PH V F + + D Sbjct: 114 -----------KIKSVQN---TFEEL---GKTWQ--LCNTGVPHLVHFCQ---NLDEFDT 151 Query: 796 LKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWER 915 + + K+ N FV++L +HLK+R +ER Sbjct: 152 MLCQKMRQKY--------NANVNFVKILDENHLKVRTYER 183
>Q71Y02:DAPF_LISMF Diaminopimelate epimerase - Listeria monocytogenes serotype 4b| (strain F2365) Length = 329 Score = 84.7 bits (208), Expect = 8e-16 Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 19/239 (7%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAA----KLCDRNFGVG-ADGVIFVMPGIN- 417 +HF K G NDF +VD ++ + + + E+ A KLCDR +G ADG+++V Sbjct: 4 IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSEV 63 Query: 418 GADYTMRIFNSDGSEPEMCGNGVRCFARFI--------AEVENLQGTHSFKIHTGAGLII 573 G MR+ NSDGS MCGNG+R AR++ A+VE ++ K T G I Sbjct: 64 GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATSLGFDI 123 Query: 574 PEIQDDGKVKVDMGQPILHGPDVPTKLPSTR--NEAV--VQAELAIDGSTWHATCVSMGN 741 P Q V++ +P + + N+ + + AELA + VS+ N Sbjct: 124 PTYQ------VEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAF-------SAVSVPN 170 Query: 742 PHCVTFGSKELKVLQVDDLKLSDIGPKF-EHHEMFPARTNTEFVQVLSRSHLKMRVWER 915 PH +TF + + +D K + + FP N FV+ LS + +R +ER Sbjct: 171 PHLITFVDQAV----LDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFER 225
>Q9Z833:DAPF_CHLPN Diaminopimelate epimerase - Chlamydia pneumoniae (Chlamydophila| pneumoniae) Length = 257 Score = 82.8 bits (203), Expect = 3e-15 Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 1/216 (0%) Frame = +1 Query: 271 YQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTMRIFNS 450 Y G GN F++ + +P+V E+ LC DG +++ P + AD + IFNS Sbjct: 15 YSGAGNRFLLGET----LPEV--EDVRFLCQET---RVDGFLYLKPS-SCADAQLIIFNS 64 Query: 451 DGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMGQPILH 630 DGS P MCGNG+RC IA + + +G + T +GL +V VDM Sbjct: 65 DGSRPTMCGNGLRC---AIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDM------ 115 Query: 631 GPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDDLKLSD 810 L R +V + E D C+ G PH V + ++ L LS Sbjct: 116 ------TLADWR-ASVHRLESRPDPLPKEVVCIHTGVPHAVVI------LPEISTLDLSI 162 Query: 811 IGPKFEHHEMF-PARTNTEFVQVLSRSHLKMRVWER 915 +GP +H+ F P N FVQ+L L++R +ER Sbjct: 163 LGPFLRYHQTFSPDGVNVNFVQILGHCQLRVRTYER 198
>P46814:DAPF_MYCLE Diaminopimelate epimerase - Mycobacterium leprae| Length = 296 Score = 82.4 bits (202), Expect = 4e-15 Identities = 78/302 (25%), Positives = 125/302 (41%), Gaps = 21/302 (6%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMP----------- 408 F K G NDF+++ + ++ V T + A LC+R G+GADGV+ V Sbjct: 3 FAKGHGTQNDFVVLPDVEADVT-FTAAQVAALCNRRQGLGADGVLRVTTAGAAVTAGVLE 61 Query: 409 ----GINGADYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIP 576 G++ +D+ M N+DGS +MCGNGVR FA ++ L+ F + + AG + Sbjct: 62 HLPDGVSCSDWYMDYRNADGSVAQMCGNGVRVFAHYL-RASGLESCDEFVVGSLAGPRLV 120 Query: 577 EIQD----DGKVKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNP 744 + + V VDMG+ L G P + + G + V +GNP Sbjct: 121 NVHHVDELNADVTVDMGKANLLGSGGPA------------FAVTVGGRRFSGVAVDVGNP 168 Query: 745 HCVTFGSKELKVLQVDDLKLSDIG-PKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXX 921 H + L +++L D+G P FP N E + ++MRV ER Sbjct: 169 HLACMDPQ----LSLEELAALDLGAPVHLDRVQFPDGVNIEVLTAPVDGMVQMRVHERGV 224 Query: 922 XXXXXXXXXXXXXXXXXXLEGRAERKCI-VDLPGGPLEIEWREDNNHVYMTGPAEAVFYG 1098 A+ + V +PGG + I + + Y+ GP+ V +G Sbjct: 225 GETRSCGTGTVAAAVAALASAGADTGTLTVRVPGGDVVITITDVTS--YLRGPSVLVAHG 282 Query: 1099 SI 1104 + Sbjct: 283 EL 284
>Q8Y5N9:DAPF_LISMO Diaminopimelate epimerase - Listeria monocytogenes| Length = 329 Score = 82.4 bits (202), Expect = 4e-15 Identities = 71/238 (29%), Positives = 108/238 (45%), Gaps = 18/238 (7%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAA----KLCDRNFGVG-ADGVIFVMPGIN- 417 +HF K G NDF +VD + + + + A KLCDR +G ADG+++V Sbjct: 4 IHFTKVHGSQNDFFLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSSEA 63 Query: 418 GADYTMRIFNSDGSEPEMCGNGVRCFARFI--------AEVENLQGTHSFKIHTGAGLII 573 G MR+ NSDGS MCGNG+R AR++ A+VE ++ K T G I Sbjct: 64 GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGFDI 123 Query: 574 PEIQDDGKVKVDMGQPILHGPDVPTKLPSTR--NEAV--VQAELAIDGSTWHATCVSMGN 741 P Q V++ + +P + + N+ V + AELA + VS+ N Sbjct: 124 PTYQ------VEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAF-------SAVSVPN 170 Query: 742 PHCVTFGSKELKVLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWER 915 PH +TF + + + S + + FP N FV+ LS + +R +ER Sbjct: 171 PHLITFVDQTVLDSDRQETLASYLN---SENPYFPDGVNVSFVKRLSDDAIYVRTFER 225
>Q929Z7:DAPF_LISIN Diaminopimelate epimerase - Listeria innocua| Length = 329 Score = 82.4 bits (202), Expect = 4e-15 Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 18/238 (7%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAA----KLCDRNFGVG-ADGVIFVMPGIN- 417 +HF K G NDF +VD ++ + + + A KLCDR +G ADG+++V Sbjct: 4 IHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSNEA 63 Query: 418 GADYTMRIFNSDGSEPEMCGNGVRCFARFI--------AEVENLQGTHSFKIHTGAGLII 573 G MR+ NSDGS MCGNG+R AR++ A+VE ++ K T G I Sbjct: 64 GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGFDI 123 Query: 574 PEIQDDGKVKVDMGQPILHGPDVPTKLPSTR--NEAV--VQAELAIDGSTWHATCVSMGN 741 P Q V++ + +P + + N+ V + +ELA + VS+ N Sbjct: 124 PTYQ------VEISPVKFNAESLPMNVGVEKLFNQVVPELDSELAF-------SAVSVPN 170 Query: 742 PHCVTFGSKELKVLQVDDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWER 915 PH +TF + + + S + + FP N FV+ LS + +R +ER Sbjct: 171 PHLITFVDQTVLDSDKQETLASYLN---SENPYFPDGVNVSFVKRLSDDAIYVRTFER 225
>P63897:DAPF_MYCTU Diaminopimelate epimerase - Mycobacterium tuberculosis| Length = 289 Score = 79.3 bits (194), Expect = 3e-14 Identities = 71/238 (29%), Positives = 100/238 (42%), Gaps = 20/238 (8%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMP----------- 408 F K G NDF+++ + D+ + +T A LCDR G+GADGV+ V Sbjct: 3 FAKGHGTQNDFVLLPDVDAELV-LTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLD 61 Query: 409 ----GINGADYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAG---L 567 G+ D+ M N+DGS +MCGNGVR FA ++ L+ F + + AG + Sbjct: 62 SLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYL-RASGLEVRDEFVVGSLAGPRPV 120 Query: 568 IIPEIQDD-GKVKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNP 744 ++ V VDMG+ G E + G +H V +GNP Sbjct: 121 TCHHVEAAYADVSVDMGKANRLG----------------AGEAVVGGRRFHGLAVDVGNP 164 Query: 745 HCVTFGSKELKVLQVDDLKLSDIG-PKFEHHEMFPARTNTEFVQVLSRSHLKMRVWER 915 H S+ L VD L D+G P FP N E + + MRV ER Sbjct: 165 HLACVDSQ----LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHER 218
>P63898:DAPF_MYCBO Diaminopimelate epimerase - Mycobacterium bovis| Length = 289 Score = 79.3 bits (194), Expect = 3e-14 Identities = 71/238 (29%), Positives = 100/238 (42%), Gaps = 20/238 (8%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMP----------- 408 F K G NDF+++ + D+ + +T A LCDR G+GADGV+ V Sbjct: 3 FAKGHGTQNDFVLLPDVDAELV-LTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLD 61 Query: 409 ----GINGADYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAG---L 567 G+ D+ M N+DGS +MCGNGVR FA ++ L+ F + + AG + Sbjct: 62 SLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYL-RASGLEVRDEFVVGSLAGPRPV 120 Query: 568 IIPEIQDD-GKVKVDMGQPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNP 744 ++ V VDMG+ G E + G +H V +GNP Sbjct: 121 TCHHVEAAYADVSVDMGKANRLG----------------AGEAVVGGRRFHGLAVDVGNP 164 Query: 745 HCVTFGSKELKVLQVDDLKLSDIG-PKFEHHEMFPARTNTEFVQVLSRSHLKMRVWER 915 H S+ L VD L D+G P FP N E + + MRV ER Sbjct: 165 HLACVDSQ----LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHER 218
>Q8TY71:DAPF_METKA Diaminopimelate epimerase - Methanopyrus kandleri| Length = 279 Score = 79.0 bits (193), Expect = 5e-14 Identities = 50/137 (36%), Positives = 68/137 (49%), Gaps = 15/137 (10%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVT--PEEAAKLCDRNFGVGADGVIFVMPGINGADY 429 + F K G NDF++VD + V + P+ A CDR GVGADGV+F+ + Sbjct: 1 MQFWKVHGARNDFVLVDETEEEVVPESDKPDFARWACDRRSGVGADGVVFIRSDPPSVE- 59 Query: 430 TMRIFNSDGSEPEMCGNGVRCFARFIAEV--------ENLQGTHSFKIHTG-AGLIIPEI 582 MRIFN DGSE E CGN RC +++ EV L G H ++ G + +PE Sbjct: 60 -MRIFNRDGSEAEFCGNAARCVVKYVTEVRGENVKILRTLSGAHRVEVQGGWIAVEVPEA 118 Query: 583 QDDGKV----KVDMGQP 621 + V +VD G P Sbjct: 119 EIKKVVELGYEVDAGVP 135
>Q8D2T4:DAPF_WIGBR Diaminopimelate epimerase - Wigglesworthia glossinidia brevipalpis| Length = 276 Score = 78.2 bits (191), Expect = 8e-14 Identities = 70/285 (24%), Positives = 120/285 (42%), Gaps = 2/285 (0%) Frame = +1 Query: 256 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADY-T 432 + F K LGNDF++V+N D ++P KL DR G+G D +I + Y Sbjct: 1 MKFSKMHSLGNDFVIVNNIDKK-NNISPIFIKKLSDRYTGIGFDQLILIEFFCKKYFYFK 59 Query: 433 MRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDM 612 ++IFNSD SE C NG+RC F+ +++ L + I GL + + + V + Sbjct: 60 IKIFNSDSSESFQCINGIRCVFMFL-KIKKLIKKNIAFIGNNLGLSKTLMTKNKLICVKI 118 Query: 613 GQPILH-GPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQV 789 P + D+ E ++ L I V +GNPHC+ K ++ Sbjct: 119 KPPRFYIEKDILVNPKYNNKEKII---LRIFKKKITCYFVFVGNPHCIIIS----KNIEY 171 Query: 790 DDLKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERXXXXXXXXXXXXXXXXXX 969 ++ L + + +FP + N + +L +K++V+ER Sbjct: 172 NNFSL--LSKYLLKNNIFPNKINISIMNILDFDLIKLKVYERGSGETQSCGSAAAAAAAV 229 Query: 970 XXLEGRAERKCIVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSI 1104 + +K V+ G L + W + N + + GPA ++ G I Sbjct: 230 AIYYKKLNKKIKVNFSRGNLYVYWEKIGNFMSIIGPANHIYDGKI 274
>O25290:DAPF_HELPY Diaminopimelate epimerase - Helicobacter pylori (Campylobacter| pylori) Length = 273 Score = 64.7 bits (156), Expect = 9e-10 Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 1/219 (0%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTMRI 441 F KY G GNDF++V S K A ++C R+ G GADG++ V+P DY Sbjct: 3 FYKYSGSGNDFLIVQ---SFKKKDFSNLAKQVCHRHEGFGADGLVVVLPS-KDYDYEWDF 58 Query: 442 FNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMGQP 621 +NSDGS+ MCGN RC F + H F G I I++ ++ ++G Sbjct: 59 YNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFL--AGKREISICIEEPNIIESNLG-- 114 Query: 622 ILHGPDVPTKLPSTRNEAVVQAELAIDG-STWHATCVSMGNPHCVTFGSKELKVLQVDDL 798 + +P+ R E + ++ T++ + G PH V F + + ++ L Sbjct: 115 ---NYKILDVIPALRCEKFFSSGSVLEHIPTFY--LIDTGVPHLVGFVENKEGLNSLNTL 169 Query: 799 KLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWER 915 +L + HE F A N F++ ++ + ++ +ER Sbjct: 170 ELRAL-----RHE-FNANINIAFIE--NKETIFLQTYER 200
>Q9ZLR5:DAPF_HELPJ Diaminopimelate epimerase - Helicobacter pylori J99 (Campylobacter| pylori J99) Length = 273 Score = 64.7 bits (156), Expect = 9e-10 Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 2/220 (0%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTMRI 441 F KY G GNDF++ S K A ++C R+ G GADG++ V+P DY Sbjct: 3 FYKYSGSGNDFLITQ---SFKKKDFSNLAQQVCHRHEGFGADGLVVVLPS-KDYDYEWDF 58 Query: 442 FNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMG-- 615 +NSDGS+ MCGN RC F + H F G I I++ V+ ++G Sbjct: 59 YNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFL--AGKREISIRIEEPNIVESNLGNY 116 Query: 616 QPILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDD 795 Q + P++ K T N + + ++ G PH V F + + ++ Sbjct: 117 QILDTIPNLRCKKFFTNNSVLENIPMFY--------LINTGVPHLVGFVKNKGLLNSLNT 168 Query: 796 LKLSDIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWER 915 L+L + HE F A N F++ ++ + ++ +ER Sbjct: 169 LELRAL-----RHE-FNANINIAFIE--NKETIFLQTYER 200
>Q88V90:DAPF_LACPL Diaminopimelate epimerase - Lactobacillus plantarum| Length = 332 Score = 63.9 bits (154), Expect = 2e-09 Identities = 66/240 (27%), Positives = 109/240 (45%), Gaps = 19/240 (7%) Frame = +1 Query: 253 ALHFVKYQGLGNDFIMVDNRDSAVPKVTPEE---AAKLCDRNFGV---GADGVIFV---- 402 A+ +K G GNDF ++D P + A +C R+ GADGV+ V Sbjct: 2 AVKMIKVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVVDKSE 61 Query: 403 MPGINGADYTMRIFNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHT-GAGLIIPE 579 P + G MR+ N+DG+E MCGNG+R AR++ +N Q F++ T A L + Sbjct: 62 HPQVLGR---MRVINADGTEASMCGNGLRTVARYLG-TQNSQ--EDFRVQTMYADLKVQA 115 Query: 580 IQDDG----KVKVDMGQPILHGPDVPTKLPSTRNEA--VVQAELAIDGSTWHATCVSMGN 741 + D V++ P+ D T N+A ++ ++ + + V++ N Sbjct: 116 VADFAAHVPAYSVEI-SPVTF--DAQTLGMHANNDATTIINEKIPALSADLKFSAVAVPN 172 Query: 742 PHCVTFGSKELKVLQVDDLKLSDIGPKFE--HHEMFPARTNTEFVQVLSRSHLKMRVWER 915 PH + F + V +L IG +++FP N FV+VL + + +R +ER Sbjct: 173 PHLIAFVDHDTLV----GPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFER 228
>Q9PJW2:DAPF_CHLMU Diaminopimelate epimerase - Chlamydia muridarum| Length = 269 Score = 61.6 bits (148), Expect = 8e-09 Identities = 62/216 (28%), Positives = 88/216 (40%), Gaps = 1/216 (0%) Frame = +1 Query: 271 YQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTMRIFNS 450 Y G GN FI+ + +P + + LC + DG + V P AD + IFNS Sbjct: 15 YSGTGNSFILGE----FIPPL--QHIVFLCQKE---KVDGFLCVEPS-EIADAKLTIFNS 64 Query: 451 DGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMGQPILH 630 DGSE MCGNG+RC +A V G I T G+ + +V VDM Sbjct: 65 DGSEASMCGNGLRC---VMAHVAQSLGLEDVSIETVRGVYQGKFFSMDRVLVDM------ 115 Query: 631 GPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDDLKLSD 810 T L + + + + G + G PH V F V V+ + + + Sbjct: 116 -----TLLDWKKTKKTLTH--VLPGMPEEVFFIDTGVPHVVVF------VPDVNKVPVQE 162 Query: 811 IGPKFEHHEMF-PARTNTEFVQVLSRSHLKMRVWER 915 G +HE F P N +FVQ L + +ER Sbjct: 163 WGAFLRYHEDFRPNGVNVDFVQTKKEDTLLVYTYER 198
>O84437:DAPF_CHLTR Diaminopimelate epimerase - Chlamydia trachomatis| Length = 275 Score = 58.9 bits (141), Expect = 5e-08 Identities = 61/219 (27%), Positives = 85/219 (38%), Gaps = 1/219 (0%) Frame = +1 Query: 262 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGINGADYTMRI 441 ++ Y G GN FI+ ++ S E+ LC DG + V AD + + Sbjct: 12 YLLYSGAGNSFILGESMPSL------EDVLFLCQEEM---VDGFLCVESS-EIADAKLTV 61 Query: 442 FNSDGSEPEMCGNGVRCFARFIAEVENLQGTHSFKIHTGAGLIIPEIQDDGKVKVDMGQP 621 FNSDGS MCGNG+RC +A V G I T G+ + +V VDM P Sbjct: 62 FNSDGSIASMCGNGLRC---AMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDMTLP 118 Query: 622 ILHGPDVPTKLPSTRNEAVVQAELAIDGSTWHATCVSMGNPHCVTFGSKELKVLQVDDLK 801 +A + + G + G PH V F S KV Sbjct: 119 -------------DWKKAERKLTHVLPGMPEQVFFIDTGVPHVVVFVSDLSKV------P 159 Query: 802 LSDIGPKFEHHEMF-PARTNTEFVQVLSRSHLKMRVWER 915 + + G +HE F P N +FVQ L + +ER Sbjct: 160 VQEWGSFLRYHEDFAPEGVNVDFVQRKKDDLLLVYTYER 198
>Q84L31:RD23C_ARATH Putative DNA repair protein RAD23-3 - Arabidopsis thaliana| (Mouse-ear cress) Length = 419 Score = 37.0 bits (84), Expect = 0.20 Identities = 28/80 (35%), Positives = 35/80 (43%) Frame = -1 Query: 515 TSAIKRAKQRTPLPHISGSLPSELNILIV*SAPLIPGMTKMTPSAPTPKFLSHSFAASSG 336 TS K T P IS P+ + SAP+ P T+ P APTP AA+ Sbjct: 91 TSQAKSIPPSTSQPSISPQTPASV------SAPVAPAPTRPPPPAPTP--TPAPVAATET 142 Query: 335 VTLGTAESLLSTIMKSLPRP 276 VT E + +TI S P P Sbjct: 143 VTTPIPEPVPATISSSTPAP 162
>P10593:ALB3_MAIZE Albumin b-32 - Zea mays (Maize)| Length = 303 Score = 33.9 bits (76), Expect = 1.7 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Frame = -1 Query: 344 SSGVTLGTAESLLSTIMKSLPRPWYLTKWRARSDSRRSR--NEAADGDLGVDTAIEATA 174 SS T G + S T S R W + W AR D R R E DGD G +A A Sbjct: 116 SSATTPGGSASAAGTRTSSATRVWRPSPWAARDDQGRQRPGEEEEDGDTGGGGGADADA 174
>Q93A90:RBL_NITS4 Ribulose bisphosphate carboxylase large chain - Nitrosospira sp.| (strain 40KI) Length = 489 Score = 31.6 bits (70), Expect = 8.3 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Frame = +1 Query: 640 VPTKLPSTRNEAVVQAELAID------GSTWHATCVSMGNPHCVTFGSKELKVLQVDDLK 801 VP P T+NEA A +A D GS + T +GN FG K +K L+++D++ Sbjct: 89 VPNTGPGTKNEAQYFAYIAYDLDLFEGGSIANLTASIIGN----VFGFKAVKALRLEDMR 144 Query: 802 L 804 + Sbjct: 145 I 145 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 222,984,171 Number of extensions: 4797012 Number of successful extensions: 13532 Number of sequences better than 10.0: 80 Number of HSP's gapped: 13227 Number of HSP's successfully gapped: 82 Length of query: 466 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 349 Effective length of database: 68,593,924 Effective search space: 23939279476 Effective search space used: 23939279476 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
