ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf6l12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8VHH5:CENG3_MOUSE Centaurin-gamma 3 - Mus musculus (Mouse) 30 5.1
2P27364:3BHS5_RAT 3 beta-hydroxysteroid dehydrogenase type 5 - Ra... 30 5.1
34... 29 8.8
44... 29 8.8

>Q8VHH5:CENG3_MOUSE Centaurin-gamma 3 - Mus musculus (Mouse)|
          Length = 910
 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +1

Query: 7  AAAQEGVCGGQEGCPGQDRQGQGAGGPA 90
          AAAQ+ VCGGQ G  G    G G GGP+
Sbjct: 25 AAAQQLVCGGQFGGAG---PGAGGGGPS 49



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>P27364:3BHS5_RAT 3 beta-hydroxysteroid dehydrogenase type 5 - Rattus norvegicus|
           (Rat)
          Length = 373

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 96  FIRGSTSTLPLPVLTWTPFLATTYSFLGR 10
           F   S+ +LPLP+L W  FL  T SFL R
Sbjct: 278 FCLDSSWSLPLPLLYWLAFLLETVSFLLR 306



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>4-isomerase type II -|
           Rattus norvegicus (Rat)
          Length = 373

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 84  STSTLPLPVLTWTPFLATTYSFLGR 10
           S+ +LPLP+L W  FL  T SFL R
Sbjct: 282 SSWSLPLPLLYWLAFLLETVSFLLR 306



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>4-isomerase type I -|
           Rattus norvegicus (Rat)
          Length = 373

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 84  STSTLPLPVLTWTPFLATTYSFLGR 10
           S+ +LPLP+L W  FL  T SFL R
Sbjct: 282 SSWSLPLPLLYWLAFLLETVSFLLR 306


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 67,666,051
Number of extensions: 1125544
Number of successful extensions: 2882
Number of sequences better than 10.0: 4
Number of HSP's gapped: 2882
Number of HSP's successfully gapped: 4
Length of query: 177
Length of database: 100,686,439
Length adjustment: 106
Effective length of query: 71
Effective length of database: 71,611,169
Effective search space: 5084392999
Effective search space used: 5084392999
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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