ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf6l12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001062885.1| Oryza sativa (japonica cultivar-group) Os05g... 44 0.50
2gb|AC186746.1| Musa acuminata clone MA4_25J11, complete sequence 44 0.50
3gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.50
4ref|XM_505394.1| Yarrowia lipolytica CLIB122, YALI0F14025g predi... 44 0.50
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
6dbj|AK101119.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.50
7emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 44 0.50
8ref|XM_423815.2| PREDICTED: Gallus gallus similar to serine palm... 42 2.0
9ref|XM_001229068.1| Chaetomium globosum CBS 148.51 hypothetical ... 42 2.0
10gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete ... 42 2.0
11gb|AC186549.2| Gallus gallus BAC clone TAM31-53J7 from chromosom... 42 2.0
12gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 2.0
13gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
14gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 42 2.0
15gb|BC052781.1| Homo sapiens RAN binding protein 9, mRNA (cDNA cl... 42 2.0
16dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
17emb|Z93020.1|HS503G16 Human DNA sequence from clone RP3-503G16 o... 42 2.0
18ref|NM_005493.2| Homo sapiens RAN binding protein 9 (RANBP9), mRNA 42 2.0
19dbj|AB055311.1| Homo sapiens mRNA for RanBPM, complete cds 42 2.0
20gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 42 2.0
21ref|XM_001225920.1| Chaetomium globosum CBS 148.51 hypothetical ... 40 7.8
22emb|BX936433.18| Zebrafish DNA sequence from clone DKEY-117A16 i... 40 7.8
23gb|CP000390.1| Mesorhizobium sp. BNC1, complete genome 40 7.8
24gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome 40 7.8
25gb|DQ451872.1| Eleutheria dichotoma fosmid fCnox-4, complete seq... 40 7.8
26gb|AC113536.10| Mus musculus chromosome 17, clone RP23-77L13, co... 40 7.8
27gb|AC164306.3| Mus musculus BAC clone RP23-190A21 from chromosom... 40 7.8
28gb|AC154363.2| Mus musculus BAC clone RP23-154K12 from chromosom... 40 7.8
29gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 7.8
30gb|AC135782.4| Homo sapiens chromosome 16 clone CTD-2555A7, comp... 40 7.8

>ref|NM_001062885.1| Oryza sativa (japonica cultivar-group) Os05g0567400 (Os05g0567400)
            mRNA, complete cds
          Length = 2755
 Score = 44.1 bits (22), Expect = 0.50
 Identities = 76/94 (80%)
 Strand = Plus / Plus

                                                                        
Query: 13   gcccaagaaggagtatgtggtggccaagaagggtgtccaggtcaggaccggcaagggcaa 72
            |||| |||||||||| || || || |||||||| || ||||| ||| | ||||| || ||
Sbjct: 2374 gccccagaaggagtacgttgtcgcaaagaagggcgttcaggtgagggctggcaaagggaa 2433

                                              
Query: 73   ggtgctggtggacccgcggatgaagaaggacaag 106
            | | ||||||||   ||| |||||||||||||||
Sbjct: 2434 gatactggtggataagcgtatgaagaaggacaag 2467



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>gb|AC186746.1| Musa acuminata clone MA4_25J11, complete sequence
          Length = 105019

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 65   aagggcaaggtgctggtggacccgcggatgaagaagga 102
            ||||| |||||||| |||||||  ||||||||||||||
Sbjct: 7329 aaggggaaggtgctagtggaccgccggatgaagaagga 7292



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>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11,
              complete sequence
          Length = 204649

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 76/94 (80%)
 Strand = Plus / Plus

                                                                          
Query: 13     gcccaagaaggagtatgtggtggccaagaagggtgtccaggtcaggaccggcaagggcaa 72
              |||| |||||||||| || || || |||||||| || ||||| ||| | ||||| || ||
Sbjct: 109035 gccccagaaggagtacgttgtcgcaaagaagggcgttcaggtgagggctggcaaagggaa 109094

                                                
Query: 73     ggtgctggtggacccgcggatgaagaaggacaag 106
              | | ||||||||   ||| |||||||||||||||
Sbjct: 109095 gatactggtggataagcgtatgaagaaggacaag 109128



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>ref|XM_505394.1| Yarrowia lipolytica CLIB122, YALI0F14025g predicted mRNA
          Length = 3141

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 220  tggtggtgggaggaaggccgcc 241
            ||||||||||||||||||||||
Sbjct: 2740 tggtggtgggaggaaggccgcc 2719



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 76/94 (80%)
 Strand = Plus / Plus

                                                                            
Query: 13       gcccaagaaggagtatgtggtggccaagaagggtgtccaggtcaggaccggcaagggcaa 72
                |||| |||||||||| || || || |||||||| || ||||| ||| | ||||| || ||
Sbjct: 28028870 gccccagaaggagtacgttgtcgcaaagaagggcgttcaggtgagggctggcaaagggaa 28028929

                                                  
Query: 73       ggtgctggtggacccgcggatgaagaaggacaag 106
                | | ||||||||   ||| |||||||||||||||
Sbjct: 28028930 gatactggtggataagcgtatgaagaaggacaag 28028963



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>dbj|AK101119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025I04, full
            insert sequence
          Length = 2758

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 76/94 (80%)
 Strand = Plus / Plus

                                                                        
Query: 13   gcccaagaaggagtatgtggtggccaagaagggtgtccaggtcaggaccggcaagggcaa 72
            |||| |||||||||| || || || |||||||| || ||||| ||| | ||||| || ||
Sbjct: 2377 gccccagaaggagtacgttgtcgcaaagaagggcgttcaggtgagggctggcaaagggaa 2436

                                              
Query: 73   ggtgctggtggacccgcggatgaagaaggacaag 106
            | | ||||||||   ||| |||||||||||||||
Sbjct: 2437 gatactggtggataagcgtatgaagaaggacaag 2470



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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 220     tggtggtgggaggaaggccgcc 241
               ||||||||||||||||||||||
Sbjct: 1891963 tggtggtgggaggaaggccgcc 1891984



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>ref|XM_423815.2| PREDICTED: Gallus gallus similar to serine palmitoyltransferase,
           long chain base subunit 1 (LOC426145), mRNA
          Length = 4337

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 69  gcaaggtgctggtggacccgc 89
           |||||||||||||||||||||
Sbjct: 288 gcaaggtgctggtggacccgc 268



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>ref|XM_001229068.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_02553)
            mRNA, complete cds
          Length = 2265

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 78   tggtggacccgcggatgaagaagga 102
            ||||||||||||| |||||||||||
Sbjct: 2204 tggtggacccgcgcatgaagaagga 2228



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>gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete sequence
          Length = 3556545

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 231     ggaaggccgccggcggtggcg 251
               |||||||||||||||||||||
Sbjct: 2782169 ggaaggccgccggcggtggcg 2782149



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>gb|AC186549.2| Gallus gallus BAC clone TAM31-53J7 from chromosome z, complete sequence
          Length = 159615

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    gcaaggtgctggtggacccgc 89
             |||||||||||||||||||||
Sbjct: 58484 gcaaggtgctggtggacccgc 58504



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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 232     gaaggccgccggcggtggcggcaaa 256
               ||||||| |||||||||||||||||
Sbjct: 1097477 gaaggcctccggcggtggcggcaaa 1097453



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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0038H12 map E60284SA, complete sequence
          Length = 139190

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 406   tgctactattagagctgtttt 426
             |||||||||||||||||||||
Sbjct: 13960 tgctactattagagctgtttt 13980



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 235    ggccgccggcggtggcggcaa 255
              |||||||||||||||||||||
Sbjct: 106739 ggccgccggcggtggcggcaa 106719



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>gb|BC052781.1| Homo sapiens RAN binding protein 9, mRNA (cDNA clone
           IMAGE:5272048), partial cds
          Length = 3288

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 233 aaggccgccggcggtggcggc 253
           |||||||||||||||||||||
Sbjct: 297 aaggccgccggcggtggcggc 277



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 406     tgctactattagagctgtttt 426
               |||||||||||||||||||||
Sbjct: 5909923 tgctactattagagctgtttt 5909903



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>emb|Z93020.1|HS503G16 Human DNA sequence from clone RP3-503G16 on chromosome 6p23 Contains
             the 5' end of the RANBP9 gene for RAN binding protein 9
             (RanBPM) and three CpG islands, complete sequence
          Length = 125686

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 233   aaggccgccggcggtggcggc 253
             |||||||||||||||||||||
Sbjct: 46982 aaggccgccggcggtggcggc 46962



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>ref|NM_005493.2| Homo sapiens RAN binding protein 9 (RANBP9), mRNA
          Length = 3132

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 233 aaggccgccggcggtggcggc 253
           |||||||||||||||||||||
Sbjct: 139 aaggccgccggcggtggcggc 119



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>dbj|AB055311.1| Homo sapiens mRNA for RanBPM, complete cds
          Length = 2657

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 233 aaggccgccggcggtggcggc 253
           |||||||||||||||||||||
Sbjct: 139 aaggccgccggcggtggcggc 119



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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 61      cggcaagggcaaggtgctggt 81
               |||||||||||||||||||||
Sbjct: 2441444 cggcaagggcaaggtgctggt 2441464



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>ref|XM_001225920.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_08265)
            mRNA, complete cds
          Length = 2139

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  tggtggtggtgggaggaagg 236
            ||||||||||||||||||||
Sbjct: 1506 tggtggtggtgggaggaagg 1525



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>emb|BX936433.18| Zebrafish DNA sequence from clone DKEY-117A16 in linkage group 6,
             complete sequence
          Length = 96168

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   ttttgttatgctatatatac 403
             ||||||||||||||||||||
Sbjct: 63273 ttttgttatgctatatatac 63254



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>gb|CP000390.1| Mesorhizobium sp. BNC1, complete genome
          Length = 4412446

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      ccggcaagggcaaggtgctg 79
               ||||||||||||||||||||
Sbjct: 1402404 ccggcaagggcaaggtgctg 1402385



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>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome
          Length = 9139763

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 64      caagggcaaggtgctggtgg 83
               ||||||||||||||||||||
Sbjct: 3643418 caagggcaaggtgctggtgg 3643437



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>gb|DQ451872.1| Eleutheria dichotoma fosmid fCnox-4, complete sequence
          Length = 34112

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 441  agttttgtaagttgctaccc 460
            ||||||||||||||||||||
Sbjct: 1505 agttttgtaagttgctaccc 1524



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>gb|AC113536.10| Mus musculus chromosome 17, clone RP23-77L13, complete sequence
          Length = 153863

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   ggtggtggtgggaggaaggc 237
             ||||||||||||||||||||
Sbjct: 29480 ggtggtggtgggaggaaggc 29461



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>gb|AC164306.3| Mus musculus BAC clone RP23-190A21 from chromosome 17, complete sequence
          Length = 206180

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    ggtggtggtgggaggaaggc 237
              ||||||||||||||||||||
Sbjct: 142423 ggtggtggtgggaggaaggc 142404



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>gb|AC154363.2| Mus musculus BAC clone RP23-154K12 from chromosome 13, complete
             sequence
          Length = 203241

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   tttttgttatgctatatata 402
             ||||||||||||||||||||
Sbjct: 67950 tttttgttatgctatatata 67969



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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 474     atttgcagacaataatttgtgatt 497
               |||| |||||||||||||||||||
Sbjct: 2236529 attttcagacaataatttgtgatt 2236506



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>gb|AC135782.4| Homo sapiens chromosome 16 clone CTD-2555A7, complete sequence
          Length = 163550

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    tggtggtggtgggaggaagg 236
              ||||||||||||||||||||
Sbjct: 121638 tggtggtggtgggaggaagg 121619


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 76,827,990
Number of extensions: 4176428
Number of successful extensions: 81138
Number of sequences better than 10.0: 30
Number of HSP's gapped: 81138
Number of HSP's successfully gapped: 30
Length of query: 533
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 511
Effective length of database: 18,508,616,841
Effective search space: 9457903205751
Effective search space used: 9457903205751
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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