| Clone Name | FLbaf6l12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001062885.1| Oryza sativa (japonica cultivar-group) Os05g0567400 (Os05g0567400) mRNA, complete cds Length = 2755 Score = 44.1 bits (22), Expect = 0.50 Identities = 76/94 (80%) Strand = Plus / Plus Query: 13 gcccaagaaggagtatgtggtggccaagaagggtgtccaggtcaggaccggcaagggcaa 72 |||| |||||||||| || || || |||||||| || ||||| ||| | ||||| || || Sbjct: 2374 gccccagaaggagtacgttgtcgcaaagaagggcgttcaggtgagggctggcaaagggaa 2433 Query: 73 ggtgctggtggacccgcggatgaagaaggacaag 106 | | |||||||| ||| ||||||||||||||| Sbjct: 2434 gatactggtggataagcgtatgaagaaggacaag 2467
>gb|AC186746.1| Musa acuminata clone MA4_25J11, complete sequence Length = 105019 Score = 44.1 bits (22), Expect = 0.50 Identities = 34/38 (89%) Strand = Plus / Minus Query: 65 aagggcaaggtgctggtggacccgcggatgaagaagga 102 ||||| |||||||| ||||||| |||||||||||||| Sbjct: 7329 aaggggaaggtgctagtggaccgccggatgaagaagga 7292
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 44.1 bits (22), Expect = 0.50 Identities = 76/94 (80%) Strand = Plus / Plus Query: 13 gcccaagaaggagtatgtggtggccaagaagggtgtccaggtcaggaccggcaagggcaa 72 |||| |||||||||| || || || |||||||| || ||||| ||| | ||||| || || Sbjct: 109035 gccccagaaggagtacgttgtcgcaaagaagggcgttcaggtgagggctggcaaagggaa 109094 Query: 73 ggtgctggtggacccgcggatgaagaaggacaag 106 | | |||||||| ||| ||||||||||||||| Sbjct: 109095 gatactggtggataagcgtatgaagaaggacaag 109128
>ref|XM_505394.1| Yarrowia lipolytica CLIB122, YALI0F14025g predicted mRNA Length = 3141 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 tggtggtgggaggaaggccgcc 241 |||||||||||||||||||||| Sbjct: 2740 tggtggtgggaggaaggccgcc 2719
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 44.1 bits (22), Expect = 0.50 Identities = 76/94 (80%) Strand = Plus / Plus Query: 13 gcccaagaaggagtatgtggtggccaagaagggtgtccaggtcaggaccggcaagggcaa 72 |||| |||||||||| || || || |||||||| || ||||| ||| | ||||| || || Sbjct: 28028870 gccccagaaggagtacgttgtcgcaaagaagggcgttcaggtgagggctggcaaagggaa 28028929 Query: 73 ggtgctggtggacccgcggatgaagaaggacaag 106 | | |||||||| ||| ||||||||||||||| Sbjct: 28028930 gatactggtggataagcgtatgaagaaggacaag 28028963
>dbj|AK101119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025I04, full insert sequence Length = 2758 Score = 44.1 bits (22), Expect = 0.50 Identities = 76/94 (80%) Strand = Plus / Plus Query: 13 gcccaagaaggagtatgtggtggccaagaagggtgtccaggtcaggaccggcaagggcaa 72 |||| |||||||||| || || || |||||||| || ||||| ||| | ||||| || || Sbjct: 2377 gccccagaaggagtacgttgtcgcaaagaagggcgttcaggtgagggctggcaaagggaa 2436 Query: 73 ggtgctggtggacccgcggatgaagaaggacaag 106 | | |||||||| ||| ||||||||||||||| Sbjct: 2437 gatactggtggataagcgtatgaagaaggacaag 2470
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 220 tggtggtgggaggaaggccgcc 241 |||||||||||||||||||||| Sbjct: 1891963 tggtggtgggaggaaggccgcc 1891984
>ref|XM_423815.2| PREDICTED: Gallus gallus similar to serine palmitoyltransferase, long chain base subunit 1 (LOC426145), mRNA Length = 4337 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 gcaaggtgctggtggacccgc 89 ||||||||||||||||||||| Sbjct: 288 gcaaggtgctggtggacccgc 268
>ref|XM_001229068.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_02553) mRNA, complete cds Length = 2265 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 78 tggtggacccgcggatgaagaagga 102 ||||||||||||| ||||||||||| Sbjct: 2204 tggtggacccgcgcatgaagaagga 2228
>gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete sequence Length = 3556545 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 ggaaggccgccggcggtggcg 251 ||||||||||||||||||||| Sbjct: 2782169 ggaaggccgccggcggtggcg 2782149
>gb|AC186549.2| Gallus gallus BAC clone TAM31-53J7 from chromosome z, complete sequence Length = 159615 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 gcaaggtgctggtggacccgc 89 ||||||||||||||||||||| Sbjct: 58484 gcaaggtgctggtggacccgc 58504
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 232 gaaggccgccggcggtggcggcaaa 256 ||||||| ||||||||||||||||| Sbjct: 1097477 gaaggcctccggcggtggcggcaaa 1097453
>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0038H12 map E60284SA, complete sequence Length = 139190 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 tgctactattagagctgtttt 426 ||||||||||||||||||||| Sbjct: 13960 tgctactattagagctgtttt 13980
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 ggccgccggcggtggcggcaa 255 ||||||||||||||||||||| Sbjct: 106739 ggccgccggcggtggcggcaa 106719
>gb|BC052781.1| Homo sapiens RAN binding protein 9, mRNA (cDNA clone IMAGE:5272048), partial cds Length = 3288 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 aaggccgccggcggtggcggc 253 ||||||||||||||||||||| Sbjct: 297 aaggccgccggcggtggcggc 277
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 tgctactattagagctgtttt 426 ||||||||||||||||||||| Sbjct: 5909923 tgctactattagagctgtttt 5909903
>emb|Z93020.1|HS503G16 Human DNA sequence from clone RP3-503G16 on chromosome 6p23 Contains the 5' end of the RANBP9 gene for RAN binding protein 9 (RanBPM) and three CpG islands, complete sequence Length = 125686 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 aaggccgccggcggtggcggc 253 ||||||||||||||||||||| Sbjct: 46982 aaggccgccggcggtggcggc 46962
>ref|NM_005493.2| Homo sapiens RAN binding protein 9 (RANBP9), mRNA Length = 3132 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 aaggccgccggcggtggcggc 253 ||||||||||||||||||||| Sbjct: 139 aaggccgccggcggtggcggc 119
>dbj|AB055311.1| Homo sapiens mRNA for RanBPM, complete cds Length = 2657 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 aaggccgccggcggtggcggc 253 ||||||||||||||||||||| Sbjct: 139 aaggccgccggcggtggcggc 119
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 cggcaagggcaaggtgctggt 81 ||||||||||||||||||||| Sbjct: 2441444 cggcaagggcaaggtgctggt 2441464
>ref|XM_001225920.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_08265) mRNA, complete cds Length = 2139 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 tggtggtggtgggaggaagg 236 |||||||||||||||||||| Sbjct: 1506 tggtggtggtgggaggaagg 1525
>emb|BX936433.18| Zebrafish DNA sequence from clone DKEY-117A16 in linkage group 6, complete sequence Length = 96168 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 ttttgttatgctatatatac 403 |||||||||||||||||||| Sbjct: 63273 ttttgttatgctatatatac 63254
>gb|CP000390.1| Mesorhizobium sp. BNC1, complete genome Length = 4412446 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccggcaagggcaaggtgctg 79 |||||||||||||||||||| Sbjct: 1402404 ccggcaagggcaaggtgctg 1402385
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 caagggcaaggtgctggtgg 83 |||||||||||||||||||| Sbjct: 3643418 caagggcaaggtgctggtgg 3643437
>gb|DQ451872.1| Eleutheria dichotoma fosmid fCnox-4, complete sequence Length = 34112 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 agttttgtaagttgctaccc 460 |||||||||||||||||||| Sbjct: 1505 agttttgtaagttgctaccc 1524
>gb|AC113536.10| Mus musculus chromosome 17, clone RP23-77L13, complete sequence Length = 153863 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ggtggtggtgggaggaaggc 237 |||||||||||||||||||| Sbjct: 29480 ggtggtggtgggaggaaggc 29461
>gb|AC164306.3| Mus musculus BAC clone RP23-190A21 from chromosome 17, complete sequence Length = 206180 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ggtggtggtgggaggaaggc 237 |||||||||||||||||||| Sbjct: 142423 ggtggtggtgggaggaaggc 142404
>gb|AC154363.2| Mus musculus BAC clone RP23-154K12 from chromosome 13, complete sequence Length = 203241 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tttttgttatgctatatata 402 |||||||||||||||||||| Sbjct: 67950 tttttgttatgctatatata 67969
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 474 atttgcagacaataatttgtgatt 497 |||| ||||||||||||||||||| Sbjct: 2236529 attttcagacaataatttgtgatt 2236506
>gb|AC135782.4| Homo sapiens chromosome 16 clone CTD-2555A7, complete sequence Length = 163550 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tggtggtggtgggaggaagg 236 |||||||||||||||||||| Sbjct: 121638 tggtggtggtgggaggaagg 121619 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 76,827,990 Number of extensions: 4176428 Number of successful extensions: 81138 Number of sequences better than 10.0: 30 Number of HSP's gapped: 81138 Number of HSP's successfully gapped: 30 Length of query: 533 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 511 Effective length of database: 18,508,616,841 Effective search space: 9457903205751 Effective search space used: 9457903205751 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)