| Clone Name | FLbaf3m06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT834286.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109H15, full insert sequence Length = 1733 Score = 79.8 bits (40), Expect = 2e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 726 tgggagccattttgttattatagaactaacttagcctgttattatgtc 773 |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1553 tgggagccattttgttattatagaactaacttagccctttattatgtc 1600 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 10 agggctaagctggacaggatcatggcatcagactactacacagc 53 ||||| ||| |||||| ||||||||| ||||||||||||||||| Sbjct: 793 agggcgaagttggacaagatcatggcttcagactactacacagc 836 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 451 ggtggcgggtaccagaatgggcgtgg 476 |||||||||||||||||||| ||||| Sbjct: 1249 ggtggcgggtaccagaatggtcgtgg 1274
>ref|NM_001057478.1| Oryza sativa (japonica cultivar-group) Os03g0688200 (Os03g0688200) mRNA, complete cds Length = 1667 Score = 79.8 bits (40), Expect = 2e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 726 tgggagccattttgttattatagaactaacttagcctgttattatgtc 773 |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1522 tgggagccattttgttattatagaactaacttagccctttattatgtc 1569 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 4 gcggtgagggctaagctggacaggatcatggcatcagactactacacagc 53 ||||| ||||| ||| |||||| ||||||||| ||||||||||||||||| Sbjct: 757 gcggttagggcgaagttggacaagatcatggcttcagactactacacagc 806 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 451 ggtggcgggtaccagaatgggcgtgg 476 |||||||||||||||||||| ||||| Sbjct: 1219 ggtggcgggtaccagaatggtcgtgg 1244 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Plus Query: 520 taccagaatggccggggtggcggcggtggtggtgggtactac 561 |||||||||||||| ||||| || | ||||||||||||||| Sbjct: 1264 taccagaatggccgtggtgggggtgagggtggtgggtactac 1305
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence Length = 150155 Score = 79.8 bits (40), Expect = 2e-11 Identities = 46/48 (95%) Strand = Plus / Minus Query: 726 tgggagccattttgttattatagaactaacttagcctgttattatgtc 773 |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 132364 tgggagccattttgttattatagaactaacttagccctttattatgtc 132317 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 4 gcggtgagggctaagctggacaggatcatggcatcagactactacacagc 53 ||||| ||||| ||| |||||| ||||||||| ||||||||||||||||| Sbjct: 136450 gcggttagggcgaagttggacaagatcatggcttcagactactacacagc 136401 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Minus Query: 520 taccagaatggccggggtggcggcggtggtggtgggtactac 561 |||||||||||||| ||||| || | ||||||||||||||| Sbjct: 132622 taccagaatggccgtggtgggggtgagggtggtgggtactac 132581 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 451 ggtggcgggtaccagaatgggcgtgg 476 |||||||||||||||||||| ||||| Sbjct: 132667 ggtggcgggtaccagaatggtcgtgg 132642
>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete sequence Length = 121849 Score = 79.8 bits (40), Expect = 2e-11 Identities = 46/48 (95%) Strand = Plus / Minus Query: 726 tgggagccattttgttattatagaactaacttagcctgttattatgtc 773 |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 6860 tgggagccattttgttattatagaactaacttagccctttattatgtc 6813 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 4 gcggtgagggctaagctggacaggatcatggcatcagactactacacagc 53 ||||| ||||| ||| |||||| ||||||||| ||||||||||||||||| Sbjct: 10946 gcggttagggcgaagttggacaagatcatggcttcagactactacacagc 10897 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Minus Query: 520 taccagaatggccggggtggcggcggtggtggtgggtactac 561 |||||||||||||| ||||| || | ||||||||||||||| Sbjct: 7118 taccagaatggccgtggtgggggtgagggtggtgggtactac 7077 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 451 ggtggcgggtaccagaatgggcgtgg 476 |||||||||||||||||||| ||||| Sbjct: 7163 ggtggcgggtaccagaatggtcgtgg 7138
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 79.8 bits (40), Expect = 2e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 726 tgggagccattttgttattatagaactaacttagcctgttattatgtc 773 |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 27263354 tgggagccattttgttattatagaactaacttagccctttattatgtc 27263401 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 4 gcggtgagggctaagctggacaggatcatggcatcagactactacacagc 53 ||||| ||||| ||| |||||| ||||||||| ||||||||||||||||| Sbjct: 27259268 gcggttagggcgaagttggacaagatcatggcttcagactactacacagc 27259317 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 451 ggtggcgggtaccagaatgggcgtgg 476 |||||||||||||||||||| ||||| Sbjct: 27263051 ggtggcgggtaccagaatggtcgtgg 27263076 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Plus Query: 520 taccagaatggccggggtggcggcggtggtggtgggtactac 561 |||||||||||||| ||||| || | ||||||||||||||| Sbjct: 27263096 taccagaatggccgtggtgggggtgagggtggtgggtactac 27263137 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 tactacacagcagctgcagtt 63 ||||||||||||||||||||| Sbjct: 9556324 tactacacagcagctgcagtt 9556344 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 33350387 gggtggcggcggtggtggtgg 33350407
>dbj|AK103539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132C02, full insert sequence Length = 1668 Score = 79.8 bits (40), Expect = 2e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 726 tgggagccattttgttattatagaactaacttagcctgttattatgtc 773 |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1523 tgggagccattttgttattatagaactaacttagccctttattatgtc 1570 Score = 60.0 bits (30), Expect = 2e-05 Identities = 45/50 (90%) Strand = Plus / Plus Query: 4 gcggtgagggctaagctggacaggatcatggcatcagactactacacagc 53 ||||| ||||| ||| |||||| ||||||||| ||||||||||||||||| Sbjct: 758 gcggttagggcgaagttggacaagatcatggcttcagactactacacagc 807 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Plus Query: 520 taccagaatggccggggtggcggcggtggtggtgggtactac 561 |||||||||||||| ||||| || | ||||||||||||||| Sbjct: 1265 taccagaatggccgtggtgggggtgagggtggtgggtactac 1306
>gb|AY108948.1| Zea mays PCO109471 mRNA sequence Length = 815 Score = 75.8 bits (38), Expect = 3e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 727 gggagccattttgttattatagaactaacttagcctgttatt 768 |||||||||||||||||||||||||||||| ||||||||||| Sbjct: 699 gggagccattttgttattatagaactaactgagcctgttatt 740 Score = 58.0 bits (29), Expect = 7e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 580 tactaccagccgaggaacttcaacaacaggggcaggggtgg 620 ||||||||||||||||||| ||||||||| ||| ||||||| Sbjct: 529 tactaccagccgaggaactacaacaacagaggccggggtgg 569 Score = 48.1 bits (24), Expect = 0.068 Identities = 30/32 (93%) Strand = Plus / Plus Query: 511 ggtggagggtaccagaatggccggggtggcgg 542 ||||| ||||||||||||||||| |||||||| Sbjct: 448 ggtggcgggtaccagaatggccgaggtggcgg 479 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 517 gggtaccagaatggccggggtggcgg 542 ||||||||||||||||| |||||||| Sbjct: 430 gggtaccagaatggccgaggtggcgg 455
>gb|AY105658.1| Zea mays PCO098746 mRNA sequence Length = 447 Score = 58.0 bits (29), Expect = 7e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 1 gctgcggtgagggctaagctggacaggatcatggcatcagactactacacagc 53 |||| ||||||||| |||||||| |||||||||||||| | ||||| |||||| Sbjct: 273 gctggggtgagggcaaagctggataggatcatggcatcgggctacttcacagc 325
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Minus Query: 529 ggccggggtggcggcggtggtgg 551 ||||||||||||||||||||||| Sbjct: 3738679 ggccggggtggcggcggtggtgg 3738657
>gb|AC141437.4| Mus musculus BAC clone RP23-283O7 from chromosome 19, complete sequence Length = 134644 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Minus Query: 696 gggtcaaaggtcatgagagggag 718 ||||||||||||||||||||||| Sbjct: 38349 gggtcaaaggtcatgagagggag 38327
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Minus Query: 529 ggccggggtggcggcggtggtgg 551 ||||||||||||||||||||||| Sbjct: 3159782 ggccggggtggcggcggtggtgg 3159760
>ref|XM_001222774.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_06680) mRNA, complete cds Length = 1062 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtggg 555 |||||||||||||||||||||| Sbjct: 969 gggtggcggcggtggtggtggg 990
>ref|XM_001219936.1| Chaetomium globosum CBS 148.51 predicted protein (CHGG_00716) mRNA, complete cds Length = 1863 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 535 ggtggcggcggtggtggtgggt 556 |||||||||||||||||||||| Sbjct: 1451 ggtggcggcggtggtggtgggt 1430
>ref|XM_001179563.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC752567 (LOC752567), mRNA Length = 3099 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 2800 ggggtggcggcggtggtggtgg 2779
>ref|XM_001200136.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC766062 (LOC766062), mRNA Length = 3099 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 2800 ggggtggcggcggtggtggtgg 2779
>gb|AC153383.1| Mus musculus 6 BAC RP23-168L2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197962 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 911 ttctgtatgtgtgagtgttttt 932 |||||||||||||||||||||| Sbjct: 39756 ttctgtatgtgtgagtgttttt 39777
>gb|AC167724.6| Mus musculus 10 BAC RP23-331P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 230186 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 911 ttctgtatgtgtgagtgttttt 932 |||||||||||||||||||||| Sbjct: 109844 ttctgtatgtgtgagtgttttt 109823
>ref|XM_549330.2| PREDICTED: Canis familiaris similar to CG1 protein (F18) (LOC492210), mRNA Length = 2490 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 535 ggtggcggcggtggtggtgggt 556 |||||||||||||||||||||| Sbjct: 884 ggtggcggcggtggtggtgggt 863
>gb|AC148477.3| Homo sapiens 12 BAC RP13-895J2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160802 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 cacagcagctgcagttggaggc 69 |||||||||||||||||||||| Sbjct: 108869 cacagcagctgcagttggaggc 108890
>gb|AC122187.3| Mus musculus BAC clone RP23-21P2 from 1, complete sequence Length = 252095 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 893 ttcccttgccttttctttttct 914 |||||||||||||||||||||| Sbjct: 89324 ttcccttgccttttctttttct 89345
>gb|AC090007.8| Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP23-156J8, complete sequence Length = 188802 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 481 cagggtggaggtggtggatatcaggc 506 |||||||||||||||||| ||||||| Sbjct: 40564 cagggtggaggtggtggacatcaggc 40589
>emb|AL669993.1|NCB23D6 Neurospora crassa DNA linkage group II BAC clone B23D6 Length = 65197 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 38012 ggggtggcggcggtggtggtgg 37991
>emb|AL356173.2|NCB14D6 Neurospora crassa DNA linkage group II BAC contig B14D6 Length = 199386 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 2286 ggggtggcggcggtggtggtgg 2265
>gb|AC157825.3| Mus musculus BAC clone RP23-230M23 from chromosome 16, complete sequence Length = 207864 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 734 attttgttattatagaactaac 755 |||||||||||||||||||||| Sbjct: 130746 attttgttattatagaactaac 130725
>gb|AC140308.2| Mus musculus BAC clone RP23-424G15 from 1, complete sequence Length = 207633 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 893 ttcccttgccttttctttttct 914 |||||||||||||||||||||| Sbjct: 155718 ttcccttgccttttctttttct 155739
>emb|AJ304358.1|DLI304358 Drosophila littoralis partial nonA gene, exon 1, strain Ala1 Length = 355 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304355.1|DLI304355 Drosophila littoralis partial nonA gene, exon 1, strain Sa6 Length = 355 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304349.1|DLI304349 Drosophila littoralis partial nonA gene, exon 1, strain Sa4 Length = 358 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304343.1|DLI304343 Drosophila littoralis partial nonA gene, exon 1, strain Sa2 Length = 358 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304337.1|DLI304337 Drosophila littoralis partial nonA gene, exon 1, strain Ku6 Length = 358 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304331.1|DLI304331 Drosophila littoralis partial nonA gene, exon 1, strain Ku4 Length = 358 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304328.1|DLI304328 Drosophila littoralis partial nonA gene, exon 1, strain Ku3 Length = 355 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304325.1|DLI304325 Drosophila littoralis partial nonA gene, exon 1, strain Ku2 Length = 358 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304322.1|DLI304322 Drosophila littoralis partial nonA gene, exon 1, strain Ku1 Length = 358 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304313.1|DLI304313 Drosophila littoralis partial nonA gene, exon 1, strain Ou4 Length = 361 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304310.1|DLI304310 Drosophila littoralis partial nonA gene, exon 1, strain Ou3 Length = 358 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304307.1|DLI304307 Drosophila littoralis partial nonA gene, exon 1, strain Ou2 Length = 358 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>emb|AJ304304.1|DLI304304 Drosophila littoralis partial nonA gene, exon 1, strain Ou1 Length = 358 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtgg 554 |||||||||||||||||||||| Sbjct: 256 ggggtggcggcggtggtggtgg 277
>ref|XM_001224394.1| Chaetomium globosum CBS 148.51 predicted protein (CHGG_05181) mRNA, complete cds Length = 1404 Score = 42.1 bits (21), Expect = 4.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 535 ggtggcggcggtggtggtgggtactacaacaacaacg 571 ||||| ||||||||||| ||| || |||||||||||| Sbjct: 1162 ggtggtggcggtggtggggggcacaacaacaacaacg 1198
>dbj|AK241129.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065097G18, full insert sequence Length = 1078 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 103 gggtggcggcggtggtggtgg 123
>ref|XM_001178980.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC583244 (LOC583244), mRNA Length = 3089 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 651 gggtggcggcggtggtggtgg 671
>ref|XM_783164.2| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC583244 (LOC583244), mRNA Length = 3089 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 651 gggtggcggcggtggtggtgg 671
>dbj|AK233675.1| Sus scrofa mRNA, clone:LVRM10203D05, expressed in liver Length = 2036 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gccgagccaaaagagcagcag 342 ||||||||||||||||||||| Sbjct: 549 gccgagccaaaagagcagcag 529
>dbj|AK233182.1| Sus scrofa mRNA, clone:LVRM10096B09, expressed in liver Length = 1901 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 gccgagccaaaagagcagcag 342 ||||||||||||||||||||| Sbjct: 416 gccgagccaaaagagcagcag 396
>ref|NM_001071523.1| Oryza sativa (japonica cultivar-group) Os10g0501900 (Os10g0501900) mRNA, complete cds Length = 1515 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ggtggcggcggtggtggtggg 555 ||||||||||||||||||||| Sbjct: 220 ggtggcggcggtggtggtggg 240
>ref|NM_001058152.1| Oryza sativa (japonica cultivar-group) Os03g0804200 (Os03g0804200) mRNA, complete cds Length = 588 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 23 gggtggcggcggtggtggtgg 43
>ref|XM_001153368.1| PREDICTED: Pan troglodytes hypothetical protein LOC746293 (LOC746293), mRNA Length = 811 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 634 gggtggcggcggtggtggtgg 614
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ggtggcggcggtggtggtggg 555 ||||||||||||||||||||| Sbjct: 7558122 ggtggcggcggtggtggtggg 7558142
>gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete sequence Length = 196835 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 894 tcccttgccttttctttttct 914 ||||||||||||||||||||| Sbjct: 165807 tcccttgccttttctttttct 165827
>gb|AY722405.1| Drosophila yakuba paired-type homeodomain protein (unc-4) mRNA, partial cds Length = 1074 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 525 gggtggcggcggtggtggtgg 545
>gb|AY394586.1| Loxodonta africana endogenous virus ERV-L clone LOX7 nonfunctional reverse transcriptase, partial sequence Length = 327 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 acacagcagctgcagttggag 67 ||||||||||||||||||||| Sbjct: 61 acacagcagctgcagttggag 41
>gb|AY394583.1| Loxodonta africana endogenous virus ERV-L clone LOX4 nonfunctional reverse transcriptase, partial sequence Length = 327 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 acacagcagctgcagttggag 67 ||||||||||||||||||||| Sbjct: 61 acacagcagctgcagttggag 41
>gb|AY394582.1| Loxodonta africana endogenous virus ERV-L clone LOX3 nonfunctional reverse transcriptase, partial sequence Length = 327 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 acacagcagctgcagttggag 67 ||||||||||||||||||||| Sbjct: 61 acacagcagctgcagttggag 41
>gb|AY394580.1| Loxodonta africana endogenous virus ERV-L clone LOX1 nonfunctional reverse transcriptase, partial sequence Length = 327 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 acacagcagctgcagttggag 67 ||||||||||||||||||||| Sbjct: 61 acacagcagctgcagttggag 41
>gb|AC125173.3| Mus musculus BAC clone RP24-492I6 from chromosome 19, complete sequence Length = 149795 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 ggccacaaggatgagaaggaa 174 ||||||||||||||||||||| Sbjct: 48239 ggccacaaggatgagaaggaa 48219
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 16393 gggtggcggcggtggtggtgg 16413
>gb|AC146459.3| Pan troglodytes BAC clone CH251-229E22 from Y, complete sequence Length = 191428 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 894 tcccttgccttttctttttct 914 ||||||||||||||||||||| Sbjct: 72127 tcccttgccttttctttttct 72107
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ggtggcggcggtggtggtggg 555 ||||||||||||||||||||| Sbjct: 133771 ggtggcggcggtggtggtggg 133791
>gb|AC104606.6| Drosophila melanogaster X BAC RP98-26L11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 183105 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 535 ggtggcggcggtggtggtggg 555 ||||||||||||||||||||| Sbjct: 141320 ggtggcggcggtggtggtggg 141300
>ref|NM_064327.2| Caenorhabditis elegans Y46G5A.23 (Y46G5A.23) mRNA, complete cds Length = 364 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 192 gggtggcggcggtggtggtgg 212
>emb|CT009509.7| Mouse DNA sequence from clone RP23-140C10 on chromosome 13, complete sequence Length = 218144 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 894 tcccttgccttttctttttct 914 ||||||||||||||||||||| Sbjct: 91506 tcccttgccttttctttttct 91526
>gb|AE012386.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 294 of 460 of the complete genome Length = 10029 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 8165 gggtggcggcggtggtggtgg 8145
>emb|AL110485.5|CEY46G5A Caenorhabditis elegans YAC Y46G5A, complete sequence Length = 197908 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 148011 gggtggcggcggtggtggtgg 147991
>gb|AC153836.5| Mus musculus 6 BAC RP23-479D21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 231946 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 ttttctttttctgtatgtgtg 923 ||||||||||||||||||||| Sbjct: 225936 ttttctttttctgtatgtgtg 225916
>emb|CR703047.2|CNS0G5F7 Tetraodon nigroviridis full-length cDNA Length = 1159 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ggtggcggcggtggtggtggg 555 ||||||||||||||||||||| Sbjct: 821 ggtggcggcggtggtggtggg 841
>emb|CR701421.2|CNS0G461 Tetraodon nigroviridis full-length cDNA Length = 1117 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ggtggcggcggtggtggtggg 555 ||||||||||||||||||||| Sbjct: 777 ggtggcggcggtggtggtggg 797
>emb|CR690791.2|CNS0FVYR Tetraodon nigroviridis full-length cDNA Length = 1196 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ggtggcggcggtggtggtggg 555 ||||||||||||||||||||| Sbjct: 682 ggtggcggcggtggtggtggg 702
>emb|CR687515.2|CNS0FTFR Tetraodon nigroviridis full-length cDNA Length = 1152 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ggtggcggcggtggtggtggg 555 ||||||||||||||||||||| Sbjct: 641 ggtggcggcggtggtggtggg 661
>gb|AC104582.3| Homo sapiens chromosome 8, clone RP11-1101K5, complete sequence Length = 186127 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 892 gttcccttgccttttctttttctgt 916 ||||||||||||||||| ||||||| Sbjct: 168905 gttcccttgccttttctgtttctgt 168929
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 134469 gggtggcggcggtggtggtgg 134489
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ggtggcggcggtggtggtggg 555 ||||||||||||||||||||| Sbjct: 18629960 ggtggcggcggtggtggtggg 18629980
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 aatggccggggttggcgtgga 432 ||||||||||||||||||||| Sbjct: 7030639 aatggccggggttggcgtgga 7030659
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 1665181 gggtggcggcggtggtggtgg 1665201
>gb|BT024458.1| Drosophila melanogaster AT18380 full insert cDNA Length = 3703 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 533 ggggtggcggcggtggtggtg 553 ||||||||||||||||||||| Sbjct: 1905 ggggtggcggcggtggtggtg 1885
>emb|X71667.1|SVLTP1 S.vulgare ltp1 gene Length = 1499 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 530 gccggggtggcggcggtggtggtgg 554 |||| |||||||||||||||||||| Sbjct: 678 gccgtggtggcggcggtggtggtgg 702
>gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6 clone RP23-86H7, complete sequence Length = 230839 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 ttttctttttctgtatgtgtg 923 ||||||||||||||||||||| Sbjct: 43806 ttttctttttctgtatgtgtg 43786
>gb|AC009494.2|AC009494 Homo sapiens BAC clone RP11-450B24 from Y, complete sequence Length = 188314 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 894 tcccttgccttttctttttct 914 ||||||||||||||||||||| Sbjct: 90935 tcccttgccttttctttttct 90955
>gb|AC137600.2| Homo sapiens chromosome 5 clone RP11-1147D2, complete sequence Length = 88884 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 agcagctgcagttggaggcta 71 ||||||||||||||||||||| Sbjct: 35524 agcagctgcagttggaggcta 35504
>dbj|BS000617.1| Pan troglodytes chromosome Y clone:PTB-206A19, complete sequences Length = 169081 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 894 tcccttgccttttctttttct 914 ||||||||||||||||||||| Sbjct: 110590 tcccttgccttttctttttct 110610
>gb|AC126172.8| Homo sapiens 12 BAC RP11-654C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111943 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 898 ttgccttttctttttctgtat 918 ||||||||||||||||||||| Sbjct: 37679 ttgccttttctttttctgtat 37699
>gb|AC026950.15| Homo sapiens chromosome 8, clone RP11-555E9, complete sequence Length = 165051 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 530 gccggggtggcggcggtggtggtgg 554 ||||||||||||||||||| ||||| Sbjct: 20669 gccggggtggcggcggtggcggtgg 20693
>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence Length = 131709 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 tactacacagcagctgcagtt 63 ||||||||||||||||||||| Sbjct: 54483 tactacacagcagctgcagtt 54463
>dbj|AP006615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1165C09 Length = 202985 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 aatggccggggttggcgtgga 432 ||||||||||||||||||||| Sbjct: 148687 aatggccggggttggcgtgga 148707
>dbj|BS000555.1| Pan troglodytes chromosome Y clone:PTB-439G17, complete sequences Length = 160463 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 894 tcccttgccttttctttttct 914 ||||||||||||||||||||| Sbjct: 146979 tcccttgccttttctttttct 146999
>gb|AY029234.1| Methanosarcina mazei nif operon, complete sequence Length = 9900 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 893 ttcccttgccttttctttttc 913 ||||||||||||||||||||| Sbjct: 7222 ttcccttgccttttctttttc 7202
>dbj|AP005933.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0674B07 Length = 192191 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 aatggccggggttggcgtgga 432 ||||||||||||||||||||| Sbjct: 76125 aatggccggggttggcgtgga 76145
>dbj|AK120900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030M03, full insert sequence Length = 1516 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ggtggcggcggtggtggtggg 555 ||||||||||||||||||||| Sbjct: 221 ggtggcggcggtggtggtggg 241
>emb|BX470118.9| Zebrafish DNA sequence from clone DKEY-207E22 in linkage group 5, complete sequence Length = 223990 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1063 tttgttatttattttgtgaag 1083 ||||||||||||||||||||| Sbjct: 149249 tttgttatttattttgtgaag 149229
>dbj|AP004485.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT08D14, TM0018, complete sequence Length = 86539 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 ggtggcggcggtggtggtggg 555 ||||||||||||||||||||| Sbjct: 23965 ggtggcggcggtggtggtggg 23985
>gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, complete sequence Length = 212270 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 914 tgtatgtgtgagtgtttttactggt 938 |||||||||||||| |||||||||| Sbjct: 137732 tgtatgtgtgagtgcttttactggt 137708
>gb|BT021476.1| Drosophila melanogaster AT04667 full insert cDNA Length = 4221 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 533 ggggtggcggcggtggtggtg 553 ||||||||||||||||||||| Sbjct: 2516 ggggtggcggcggtggtggtg 2496
>dbj|AP005363.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1653C10, complete sequence Length = 158682 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 892 gttcccttgccttttctttttctgt 916 ||||||||||||||||| ||||||| Sbjct: 27209 gttcccttgccttttctgtttctgt 27185
>dbj|AP003392.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-110I1, complete sequence Length = 178341 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 602 acaacaggggcaggggtggcc 622 ||||||||||||||||||||| Sbjct: 140521 acaacaggggcaggggtggcc 140541
>gb|AC136426.2| Homo sapiens chromosome 5 clone CTD-2008N14, complete sequence Length = 121099 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 agcagctgcagttggaggcta 71 ||||||||||||||||||||| Sbjct: 111301 agcagctgcagttggaggcta 111321
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 893 ttcccttgccttttctttttc 913 ||||||||||||||||||||| Sbjct: 873065 ttcccttgccttttctttttc 873045
>gb|U34258.1|DMU34258 Drosophila melanogaster cappuccino (capu) mRNA, complete cds Length = 3873 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 533 ggggtggcggcggtggtggtg 553 ||||||||||||||||||||| Sbjct: 2084 ggggtggcggcggtggtggtg 2064
>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147503 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 gggtggcggcggtggtggtgg 554 ||||||||||||||||||||| Sbjct: 134469 gggtggcggcggtggtggtgg 134489
>emb|CT032775.1| Platynereis dumerilii EST IB0AAA31DA08EM1 Length = 867 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 533 ggggtggcggcggtggtggtg 553 ||||||||||||||||||||| Sbjct: 105 ggggtggcggcggtggtggtg 125
>emb|Z83317.1| Caenorhabditis elegans Cosmid F13G11, complete sequence Length = 38225 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 717 agaagagtctgggagccattttgtt 741 |||||||||||||||| |||||||| Sbjct: 20536 agaagagtctgggagctattttgtt 20560
>emb|AL929059.5| Mouse DNA sequence from clone RP23-437L13 on chromosome 2, complete sequence Length = 107108 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1061 cctttgttatttattttgtga 1081 ||||||||||||||||||||| Sbjct: 98455 cctttgttatttattttgtga 98475 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 219,680,867 Number of extensions: 14131791 Number of successful extensions: 328047 Number of sequences better than 10.0: 100 Number of HSP's gapped: 328047 Number of HSP's successfully gapped: 121 Length of query: 1116 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1093 Effective length of database: 18,503,978,556 Effective search space: 20224848561708 Effective search space used: 20224848561708 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)