>Q7Z591:AKNA_HUMAN AT-hook-containing transcription factor - Homo sapiens (Human)|
          Length = 1439
 Score = 26.6 bits (57), Expect(2) = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 439  PSNLQRAKKYPPTAPPP 489
            P++ Q A K+PPTA PP
Sbjct: 1363 PTSAQPAAKWPPTASPP 1379



 Score = 25.4 bits (54), Expect(2) = 1.2
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = +2

Query: 299  PVPDAPGPSEAEACSSTTHDAASSSPXXXXXXXXXXXXXXTSPSKWSQAT 448
            P  D PG + + A  +TT   ASS+P                P  W  AT
Sbjct: 1281 PEADGPGSATSGAEKATTRRKASSTPSPKQRSKQAGSSPRPPPGLWYLAT 1330

>Q872I5:INO80_NEUCR Putative DNA helicase ino-80 - Neurospora crassa|
          Length = 2001

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
 Frame = +1

Query: 208 SLPLRSGARKTRTRSHPLQSFRAPSP--ASPPTCPGCARS**S*SMLLHHT*CSLLQPLW 381
           S  LRS  R+     HPL S   P+P  ASPPT    A +  + + L      S   P  
Sbjct: 102 SFNLRSPTREPSEYRHPLSSLATPAPFAASPPTSIANANNTNNNNALGAAGSLSSQPPPP 161

Query: 382 LKKAPRRV-----PKTAHQPQQMEPSNLQRAKKYPPTAPPP 489
               PR +     P   HQ Q   P+    A    P+ PPP
Sbjct: 162 PPTGPRSILNPPTPSQQHQQQHHHPNPFVAAS--APSLPPP 200

>P49455:TPM4_DROME Tropomyosin-1, isoforms 33/34 - Drosophila melanogaster (Fruit fly)|
          Length = 518

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 381 AKEGTKEGAKDGAPAPANGAKQPAESKEVPANG 479
           A EG    A +GA  PA GA  PAE    PA+G
Sbjct: 407 AAEGEAAPAAEGAAPPAEGAAPPAEGAVPPADG 439

>Q6DT37:MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma - Homo sapiens (Human)|
          Length = 1551

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 24/92 (26%), Positives = 38/92 (41%)
 Frame = +3

Query: 57  AFYEKRIQTCETNKVHSREREKIFVESQEKFHASADKQYWKSISELIPHEIATIEKRGXX 236
           A  E+++Q  E  KV    +       QE  HA  D +  + + +    E+ T+  R   
Sbjct: 413 AALERKLQCLEQEKVELSRKH------QEALHAPTDHRELEQLRK----EVQTLRDRLPE 462

Query: 237 XXXXXPSIAVIQGPKPGKPTDLSRMRQVLVKL 332
                 S++   GP  G P   S +RQ L +L
Sbjct: 463 MLRDKASLSQTDGPPAGSPGQDSDLRQELDRL 494

>P35444:COMP_RAT Cartilage oligomeric matrix protein precursor - Rattus norvegicus|
           (Rat)
          Length = 755

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 431 KWSQA--TCREQRSTRQRPRHRDGEGAACXXXXXXXRV 538
           KW  A   CR Q++  Q+   RDG+G AC       R+
Sbjct: 341 KWGDACDNCRSQKNDDQKDTDRDGQGDACDDDIDGDRI 378


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 130,535,051
Number of extensions: 2682565
Number of successful extensions: 10197
Number of sequences better than 10.0: 5
Number of HSP's gapped: 10154
Number of HSP's successfully gapped: 6
Length of query: 271
Length of database: 100,686,439
Length adjustment: 111
Effective length of query: 160
Effective length of database: 70,239,694
Effective search space: 11238351040
Effective search space used: 11238351040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)