ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf11h13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001050583.1| Oryza sativa (japonica cultivar-group) Os01g0711600 (Os01g0711600) mRNA, complete cds Length = 1102 Score = 212 bits (107), Expect = 2e-51 Identities = 362/447 (80%) Strand = Plus / Plus Query: 271 gaggatggatctgtcctggattttgctggttcaaattttgtgagcatggataattttgca 330 |||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 537 gaggatgggactgtcttggattttgctggttcaaatctggtgagcatggataattttgca 596 Query: 331 tatggttctgtcgctagatacctccagctggacagaaagaagtgctgctttcctgctaat 390 ||||||||| | || ||||| |||||||| |||||||||||||| |||||||||| |||| Sbjct: 597 tatggttctattgcgagatatctccagcttgacagaaagaagtgttgctttcctgttaat 656 Query: 391 ctgggggcacatgtatgcgagtcgacgtacaagcacacagaagttggaacagcaacatcc 450 || | | |||||||||| ||| | | |||||||| |||||| ||||| || | ||| Sbjct: 657 ctcgcgacacatgtatgtgagcggtcctacaagcatgcagaagcaggaacggcgatttcc 716 Query: 451 tgggatagtaccttgcaactgggcacaagacatttccagcacaaatactacaacctgttc 510 ||||| | |||||||||||| ||| |||| |||||| | ||| || ||||| Sbjct: 717 tgggacgacgctctgcaactgggcatgagaagtttcgggcacaagttctataatctgttt 776 Query: 511 acctgcaactgttactcattcgtagcaaactgcctgaaccggcttgcccacggcggttcg 570 |||||||| || |||||||| || ||||||||| |||| ||||||||| || || || Sbjct: 777 acctgcaattgctactcatttgtggcaaactgcttgaatcggcttgcctacaatggctcc 836 Query: 571 gcggagtggaatgttttgaatgtggcagctcttgtctggcttcacggcgaatgggtggac 630 | | |||||||||| ||||||||||| |||||||| ||| | | ||| |||||||||| Sbjct: 837 gtgaagtggaatgtgttgaatgtggctgctcttgtttggttgcgtggccaatgggtggat 896 Query: 631 aaaatgtctgtcgttcggtcattcgcgccattcgtgactgtgacgtgcatcggtattttt 690 ||||||||||| ||||| |||||| || || | |||||||| ||| | || ||||| Sbjct: 897 aaaatgtctgttgttcgttcattctttccttttctaactgtgacatgcgttggcatttta 956 Query: 691 atggccggctggtctttcctaataggg 717 ||||| |||||| |||||||||||||| Sbjct: 957 atggctggctggcctttcctaataggg 983 Score = 48.1 bits (24), Expect = 0.055 Identities = 24/24 (100%) Strand = Plus / Plus Query: 248 actgcaggagttgtggccagttgg 271 |||||||||||||||||||||||| Sbjct: 407 actgcaggagttgtggccagttgg 430
>dbj|AK099559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034H16, full insert sequence Length = 1102 Score = 212 bits (107), Expect = 2e-51 Identities = 362/447 (80%) Strand = Plus / Plus Query: 271 gaggatggatctgtcctggattttgctggttcaaattttgtgagcatggataattttgca 330 |||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 537 gaggatgggactgtcttggattttgctggttcaaatctggtgagcatggataattttgca 596 Query: 331 tatggttctgtcgctagatacctccagctggacagaaagaagtgctgctttcctgctaat 390 ||||||||| | || ||||| |||||||| |||||||||||||| |||||||||| |||| Sbjct: 597 tatggttctattgcgagatatctccagcttgacagaaagaagtgttgctttcctgttaat 656 Query: 391 ctgggggcacatgtatgcgagtcgacgtacaagcacacagaagttggaacagcaacatcc 450 || | | |||||||||| ||| | | |||||||| |||||| ||||| || | ||| Sbjct: 657 ctcgcgacacatgtatgtgagcggtcctacaagcatgcagaagcaggaacggcgatttcc 716 Query: 451 tgggatagtaccttgcaactgggcacaagacatttccagcacaaatactacaacctgttc 510 ||||| | |||||||||||| ||| |||| |||||| | ||| || ||||| Sbjct: 717 tgggacgacgctctgcaactgggcatgagaagtttcgggcacaagttctataatctgttt 776 Query: 511 acctgcaactgttactcattcgtagcaaactgcctgaaccggcttgcccacggcggttcg 570 |||||||| || |||||||| || ||||||||| |||| ||||||||| || || || Sbjct: 777 acctgcaattgctactcatttgtggcaaactgcttgaatcggcttgcctacaatggctcc 836 Query: 571 gcggagtggaatgttttgaatgtggcagctcttgtctggcttcacggcgaatgggtggac 630 | | |||||||||| ||||||||||| |||||||| ||| | | ||| |||||||||| Sbjct: 837 gtgaagtggaatgtgttgaatgtggctgctcttgtttggttgcgtggccaatgggtggat 896 Query: 631 aaaatgtctgtcgttcggtcattcgcgccattcgtgactgtgacgtgcatcggtattttt 690 ||||||||||| ||||| |||||| || || | |||||||| ||| | || ||||| Sbjct: 897 aaaatgtctgttgttcgttcattctttccttttctaactgtgacatgcgttggcatttta 956 Query: 691 atggccggctggtctttcctaataggg 717 ||||| |||||| |||||||||||||| Sbjct: 957 atggctggctggcctttcctaataggg 983 Score = 48.1 bits (24), Expect = 0.055 Identities = 24/24 (100%) Strand = Plus / Plus Query: 248 actgcaggagttgtggccagttgg 271 |||||||||||||||||||||||| Sbjct: 407 actgcaggagttgtggccagttgg 430
>emb|CT831830.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013P14, full insert sequence Length = 396 Score = 123 bits (62), Expect = 1e-24 Identities = 206/254 (81%) Strand = Plus / Plus Query: 464 tgcaactgggcacaagacatttccagcacaaatactacaacctgttcacctgcaactgtt 523 |||||||||||| ||| |||| ||||||| | ||| || |||||||||||||| || | Sbjct: 4 tgcaactgggcatgagaagtttcgagcacaagttctataatctgttcacctgcaattgct 63 Query: 524 actcattcgtagcaaactgcctgaaccggcttgcccacggcggttcggcggagtggaatg 583 ||||||| || ||||||||| |||| ||||||||| || || || | | ||||||||| Sbjct: 64 actcatttgtggcaaactgcttgaatcggcttgcctacaatggctccgtgaagtggaatg 123 Query: 584 ttttgaatgtggcagctcttgtctggcttcacggcgaatgggtggacaaaatgtctgtcg 643 | ||||||||||| |||||||| ||| | | ||| |||||||||| ||||||||||| | Sbjct: 124 tgttgaatgtggctgctcttgtttggttgcgtggccaatgggtggataaaatgtctgttg 183 Query: 644 ttcggtcattcgcgccattcgtgactgtgacgtgcatcggtatttttatggccggctggt 703 |||| |||||| || || | |||||||| ||| | || ||||| ||||| |||||| Sbjct: 184 ttcgttcattctttccttttctaactgtgacatgcgttggcattttaatggctggctggc 243 Query: 704 ctttcctaataggg 717 |||||||||||||| Sbjct: 244 ctttcctaataggg 257
>emb|CT831829.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA015E01, full insert sequence Length = 405 Score = 123 bits (62), Expect = 1e-24 Identities = 206/254 (81%) Strand = Plus / Plus Query: 464 tgcaactgggcacaagacatttccagcacaaatactacaacctgttcacctgcaactgtt 523 |||||||||||| ||| |||| ||||||| | ||| || |||||||||||||| || | Sbjct: 4 tgcaactgggcatgagaagtttcgagcacaagttctataatctgttcacctgcaattgct 63 Query: 524 actcattcgtagcaaactgcctgaaccggcttgcccacggcggttcggcggagtggaatg 583 ||||||| || ||||||||| |||| ||||||||| || || || | | ||||||||| Sbjct: 64 actcatttgtggcaaactgcttgaatcggcttgcctacaatggctccgtgaagtggaatg 123 Query: 584 ttttgaatgtggcagctcttgtctggcttcacggcgaatgggtggacaaaatgtctgtcg 643 | ||||||||||| |||||||| ||| | | ||| |||||||||| ||||||||||| | Sbjct: 124 tgttgaatgtggctgctcttgtttggttgcgtggccaatgggtggataaaatgtctgttg 183 Query: 644 ttcggtcattcgcgccattcgtgactgtgacgtgcatcggtatttttatggccggctggt 703 |||| |||||| || || | |||||||| ||| | || ||||| ||||| |||||| Sbjct: 184 ttcgttcattctttccttttctaactgtgacatgcgttggcattttaatggctggctggc 243 Query: 704 ctttcctaataggg 717 |||||||||||||| Sbjct: 244 ctttcctaataggg 257
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 123 bits (62), Expect = 1e-24 Identities = 92/102 (90%) Strand = Plus / Plus Query: 271 gaggatggatctgtcctggattttgctggttcaaattttgtgagcatggataattttgca 330 |||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 29567543 gaggatgggactgtcttggattttgctggttcaaatctggtgagcatggataattttgca 29567602 Query: 331 tatggttctgtcgctagatacctccagctggacagaaagaag 372 ||||||||| | || ||||| |||||||| |||||||||||| Sbjct: 29567603 tatggttctattgcgagatatctccagcttgacagaaagaag 29567644 Score = 107 bits (54), Expect = 7e-20 Identities = 204/254 (80%) Strand = Plus / Plus Query: 464 tgcaactgggcacaagacatttccagcacaaatactacaacctgttcacctgcaactgtt 523 |||||||||||| ||| |||| |||||| | ||| || ||||| |||||||| || | Sbjct: 29568507 tgcaactgggcatgagaagtttcgggcacaagttctataatctgtttacctgcaattgct 29568566 Query: 524 actcattcgtagcaaactgcctgaaccggcttgcccacggcggttcggcggagtggaatg 583 ||||||| || ||||||||| |||| ||||||||| || || || | | ||||||||| Sbjct: 29568567 actcatttgtggcaaactgcttgaatcggcttgcctacaatggctccgtgaagtggaatg 29568626 Query: 584 ttttgaatgtggcagctcttgtctggcttcacggcgaatgggtggacaaaatgtctgtcg 643 | ||||||||||| |||||||| ||| | | ||| |||||||||| ||||||||||| | Sbjct: 29568627 tgttgaatgtggctgctcttgtttggttgcgtggccaatgggtggataaaatgtctgttg 29568686 Query: 644 ttcggtcattcgcgccattcgtgactgtgacgtgcatcggtatttttatggccggctggt 703 |||| |||||| || || | |||||||| ||| | || ||||| ||||| |||||| Sbjct: 29568687 ttcgttcattctttccttttctaactgtgacatgcgttggcattttaatggctggctggc 29568746 Query: 704 ctttcctaataggg 717 |||||||||||||| Sbjct: 29568747 ctttcctaataggg 29568760 Score = 48.1 bits (24), Expect = 0.055 Identities = 24/24 (100%) Strand = Plus / Plus Query: 248 actgcaggagttgtggccagttgg 271 |||||||||||||||||||||||| Sbjct: 29567413 actgcaggagttgtggccagttgg 29567436
>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1142C05 Length = 151457 Score = 123 bits (62), Expect = 1e-24 Identities = 92/102 (90%) Strand = Plus / Plus Query: 271 gaggatggatctgtcctggattttgctggttcaaattttgtgagcatggataattttgca 330 |||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 37363 gaggatgggactgtcttggattttgctggttcaaatctggtgagcatggataattttgca 37422 Query: 331 tatggttctgtcgctagatacctccagctggacagaaagaag 372 ||||||||| | || ||||| |||||||| |||||||||||| Sbjct: 37423 tatggttctattgcgagatatctccagcttgacagaaagaag 37464 Score = 107 bits (54), Expect = 7e-20 Identities = 204/254 (80%) Strand = Plus / Plus Query: 464 tgcaactgggcacaagacatttccagcacaaatactacaacctgttcacctgcaactgtt 523 |||||||||||| ||| |||| |||||| | ||| || ||||| |||||||| || | Sbjct: 38327 tgcaactgggcatgagaagtttcgggcacaagttctataatctgtttacctgcaattgct 38386 Query: 524 actcattcgtagcaaactgcctgaaccggcttgcccacggcggttcggcggagtggaatg 583 ||||||| || ||||||||| |||| ||||||||| || || || | | ||||||||| Sbjct: 38387 actcatttgtggcaaactgcttgaatcggcttgcctacaatggctccgtgaagtggaatg 38446 Query: 584 ttttgaatgtggcagctcttgtctggcttcacggcgaatgggtggacaaaatgtctgtcg 643 | ||||||||||| |||||||| ||| | | ||| |||||||||| ||||||||||| | Sbjct: 38447 tgttgaatgtggctgctcttgtttggttgcgtggccaatgggtggataaaatgtctgttg 38506 Query: 644 ttcggtcattcgcgccattcgtgactgtgacgtgcatcggtatttttatggccggctggt 703 |||| |||||| || || | |||||||| ||| | || ||||| ||||| |||||| Sbjct: 38507 ttcgttcattctttccttttctaactgtgacatgcgttggcattttaatggctggctggc 38566 Query: 704 ctttcctaataggg 717 |||||||||||||| Sbjct: 38567 ctttcctaataggg 38580 Score = 48.1 bits (24), Expect = 0.055 Identities = 24/24 (100%) Strand = Plus / Plus Query: 248 actgcaggagttgtggccagttgg 271 |||||||||||||||||||||||| Sbjct: 37233 actgcaggagttgtggccagttgg 37256
>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456F08 Length = 156850 Score = 123 bits (62), Expect = 1e-24 Identities = 92/102 (90%) Strand = Plus / Plus Query: 271 gaggatggatctgtcctggattttgctggttcaaattttgtgagcatggataattttgca 330 |||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 133817 gaggatgggactgtcttggattttgctggttcaaatctggtgagcatggataattttgca 133876 Query: 331 tatggttctgtcgctagatacctccagctggacagaaagaag 372 ||||||||| | || ||||| |||||||| |||||||||||| Sbjct: 133877 tatggttctattgcgagatatctccagcttgacagaaagaag 133918 Score = 107 bits (54), Expect = 7e-20 Identities = 204/254 (80%) Strand = Plus / Plus Query: 464 tgcaactgggcacaagacatttccagcacaaatactacaacctgttcacctgcaactgtt 523 |||||||||||| ||| |||| |||||| | ||| || ||||| |||||||| || | Sbjct: 134781 tgcaactgggcatgagaagtttcgggcacaagttctataatctgtttacctgcaattgct 134840 Query: 524 actcattcgtagcaaactgcctgaaccggcttgcccacggcggttcggcggagtggaatg 583 ||||||| || ||||||||| |||| ||||||||| || || || | | ||||||||| Sbjct: 134841 actcatttgtggcaaactgcttgaatcggcttgcctacaatggctccgtgaagtggaatg 134900 Query: 584 ttttgaatgtggcagctcttgtctggcttcacggcgaatgggtggacaaaatgtctgtcg 643 | ||||||||||| |||||||| ||| | | ||| |||||||||| ||||||||||| | Sbjct: 134901 tgttgaatgtggctgctcttgtttggttgcgtggccaatgggtggataaaatgtctgttg 134960 Query: 644 ttcggtcattcgcgccattcgtgactgtgacgtgcatcggtatttttatggccggctggt 703 |||| |||||| || || | |||||||| ||| | || ||||| ||||| |||||| Sbjct: 134961 ttcgttcattctttccttttctaactgtgacatgcgttggcattttaatggctggctggc 135020 Query: 704 ctttcctaataggg 717 |||||||||||||| Sbjct: 135021 ctttcctaataggg 135034 Score = 48.1 bits (24), Expect = 0.055 Identities = 24/24 (100%) Strand = Plus / Plus Query: 248 actgcaggagttgtggccagttgg 271 |||||||||||||||||||||||| Sbjct: 133687 actgcaggagttgtggccagttgg 133710
>gb|AC136223.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0093E24, complete sequence Length = 146492 Score = 85.7 bits (43), Expect = 3e-13 Identities = 125/151 (82%), Gaps = 1/151 (0%) Strand = Plus / Plus Query: 505 ctgttcacctgcaactgttactcattc-gtagcaaactgcctgaaccggcttgcccacgg 563 |||||||||||||| || |||||||| || ||||||||| |||| ||||||||| || Sbjct: 118985 ctgttcacctgcaattgctactcattttgtggcaaactgcttgaatcggcttgcctacaa 119044 Query: 564 cggttcggcggagtggaatgttttgaatgtggcagctcttgtctggcttcacggcgaatg 623 || || | | |||||||||| ||||||||||| |||||||| ||| | || ||| |||| Sbjct: 119045 tggctccgtgaagtggaatgtgttgaatgtggctgctcttgtttggttgcatggccaatg 119104 Query: 624 ggtggacaaaatgtctgtcgttcggtcattc 654 |||||| |||||| |||| ||||| |||||| Sbjct: 119105 ggtggataaaatgcctgttgttcgttcattc 119135
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 85.7 bits (43), Expect = 3e-13 Identities = 125/151 (82%), Gaps = 1/151 (0%) Strand = Plus / Plus Query: 505 ctgttcacctgcaactgttactcattc-gtagcaaactgcctgaaccggcttgcccacgg 563 |||||||||||||| || |||||||| || ||||||||| |||| ||||||||| || Sbjct: 8196752 ctgttcacctgcaattgctactcattttgtggcaaactgcttgaatcggcttgcctacaa 8196811 Query: 564 cggttcggcggagtggaatgttttgaatgtggcagctcttgtctggcttcacggcgaatg 623 || || | | |||||||||| ||||||||||| |||||||| ||| | || ||| |||| Sbjct: 8196812 tggctccgtgaagtggaatgtgttgaatgtggctgctcttgtttggttgcatggccaatg 8196871 Query: 624 ggtggacaaaatgtctgtcgttcggtcattc 654 |||||| |||||| |||| ||||| |||||| Sbjct: 8196872 ggtggataaaatgcctgttgttcgttcattc 8196902 Score = 71.9 bits (36), Expect = 4e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 270 ggaggatggatctgtcctggattttgctggttcaaattttgtgagcatggataattttgc 329 |||||||||| ||||| |||| ||||| ||||||||||||||||| | ||| | |||| Sbjct: 26610170 ggaggatggaactgtcatggactttgcaggttcaaattttgtgagtgtagatgaccttgc 26610111 Query: 330 atatggttctgtcgctagatacctccagctggacag 365 ||||||||||| || || ||||||||||| ||||| Sbjct: 26610110 atatggttctgctgcgaggtacctccagctcgacag 26610075 Score = 54.0 bits (27), Expect = 9e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 488 agcacaaatactacaacctgttcacctgcaactgttactcattcgtagcaaactgcctga 547 ||||||| | ||||||||| |||||||||||| | |||| ||||| || | |||||||| Sbjct: 26609353 agcacaagtgctacaacctcttcacctgcaacagccactccttcgtggcgagctgcctga 26609294 Query: 548 accggcttgcccacggcgg 566 |||| || ||| ||||||| Sbjct: 26609293 accgcctcgcctacggcgg 26609275
>emb|CT830942.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109L24, full insert sequence Length = 1088 Score = 81.8 bits (41), Expect = 4e-12 Identities = 98/117 (83%) Strand = Plus / Plus Query: 270 ggaggatggatctgtcctggattttgctggttcaaattttgtgagcatggataattttgc 329 |||||||||| ||||| |||| ||||| ||||||||||||||||| | ||| | |||| Sbjct: 374 ggaggatggaactgtcatggactttgcaggttcaaattttgtgagtgtagatgaccttgc 433 Query: 330 atatggttctgtcgctagatacctccagctggacagaaagaagtgctgctttcctgc 386 ||||||||||| || || ||||||||||| ||||| | ||||||||||| ||||| Sbjct: 434 atatggttctgctgcgaggtacctccagctcgacaggagaaagtgctgcttccctgc 490 Score = 54.0 bits (27), Expect = 9e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 488 agcacaaatactacaacctgttcacctgcaactgttactcattcgtagcaaactgcctga 547 ||||||| | ||||||||| |||||||||||| | |||| ||||| || | |||||||| Sbjct: 592 agcacaagtgctacaacctcttcacctgcaacagccactccttcgtggcgagctgcctga 651 Query: 548 accggcttgcccacggcgg 566 |||| || ||| ||||||| Sbjct: 652 accgcctcgcctacggcgg 670
>ref|NM_001062711.1| Oryza sativa (japonica cultivar-group) Os05g0539800 (Os05g0539800) mRNA, complete cds Length = 1091 Score = 81.8 bits (41), Expect = 4e-12 Identities = 98/117 (83%) Strand = Plus / Plus Query: 270 ggaggatggatctgtcctggattttgctggttcaaattttgtgagcatggataattttgc 329 |||||||||| ||||| |||| ||||| ||||||||||||||||| | ||| | |||| Sbjct: 366 ggaggatggaactgtcatggactttgcaggttcaaattttgtgagtgtagatgaccttgc 425 Query: 330 atatggttctgtcgctagatacctccagctggacagaaagaagtgctgctttcctgc 386 ||||||||||| || || ||||||||||| ||||| | ||||||||||| ||||| Sbjct: 426 atatggttctgctgcgaggtacctccagctcgacaggagaaagtgctgcttccctgc 482 Score = 54.0 bits (27), Expect = 9e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 488 agcacaaatactacaacctgttcacctgcaactgttactcattcgtagcaaactgcctga 547 ||||||| | ||||||||| |||||||||||| | |||| ||||| || | |||||||| Sbjct: 584 agcacaagtgctacaacctcttcacctgcaacagccactccttcgtggcgagctgcctga 643 Query: 548 accggcttgcccacggcgg 566 |||| || ||| ||||||| Sbjct: 644 accgcctcgcctacggcgg 662
>dbj|AK102316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090F11, full insert sequence Length = 1071 Score = 81.8 bits (41), Expect = 4e-12 Identities = 98/117 (83%) Strand = Plus / Plus Query: 270 ggaggatggatctgtcctggattttgctggttcaaattttgtgagcatggataattttgc 329 |||||||||| ||||| |||| ||||| ||||||||||||||||| | ||| | |||| Sbjct: 375 ggaggatggaactgtcatggactttgcaggttcaaattttgtgagtgtagatgaccttgc 434 Query: 330 atatggttctgtcgctagatacctccagctggacagaaagaagtgctgctttcctgc 386 ||||||||||| || || ||||||||||| ||||| | ||||||||||| ||||| Sbjct: 435 atatggttctgctgcgaggtacctccagctcgacaggagaaagtgctgcttccctgc 491 Score = 54.0 bits (27), Expect = 9e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 488 agcacaaatactacaacctgttcacctgcaactgttactcattcgtagcaaactgcctga 547 ||||||| | ||||||||| |||||||||||| | |||| ||||| || | |||||||| Sbjct: 593 agcacaagtgctacaacctcttcacctgcaacagccactccttcgtggcgagctgcctga 652 Query: 548 accggcttgcccacggcgg 566 |||| || ||| ||||||| Sbjct: 653 accgcctcgcctacggcgg 671
>dbj|AK061570.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-F09, full insert sequence Length = 1091 Score = 81.8 bits (41), Expect = 4e-12 Identities = 98/117 (83%) Strand = Plus / Plus Query: 270 ggaggatggatctgtcctggattttgctggttcaaattttgtgagcatggataattttgc 329 |||||||||| ||||| |||| ||||| ||||||||||||||||| | ||| | |||| Sbjct: 366 ggaggatggaactgtcatggactttgcaggttcaaattttgtgagtgtagatgaccttgc 425 Query: 330 atatggttctgtcgctagatacctccagctggacagaaagaagtgctgctttcctgc 386 ||||||||||| || || ||||||||||| ||||| | ||||||||||| ||||| Sbjct: 426 atatggttctgctgcgaggtacctccagctcgacaggagaaagtgctgcttccctgc 482 Score = 54.0 bits (27), Expect = 9e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 488 agcacaaatactacaacctgttcacctgcaactgttactcattcgtagcaaactgcctga 547 ||||||| | ||||||||| |||||||||||| | |||| ||||| || | |||||||| Sbjct: 584 agcacaagtgctacaacctcttcacctgcaacagccactccttcgtggcgagctgcctga 643 Query: 548 accggcttgcccacggcgg 566 |||| || ||| ||||||| Sbjct: 644 accgcctcgcctacggcgg 662
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 71.9 bits (36), Expect = 4e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 270 ggaggatggatctgtcctggattttgctggttcaaattttgtgagcatggataattttgc 329 |||||||||| ||||| |||| ||||| ||||||||||||||||| | ||| | |||| Sbjct: 123645 ggaggatggaactgtcatggactttgcaggttcaaattttgtgagtgtagatgaccttgc 123586 Query: 330 atatggttctgtcgctagatacctccagctggacag 365 ||||||||||| || || ||||||||||| ||||| Sbjct: 123585 atatggttctgctgcgaggtacctccagctcgacag 123550 Score = 54.0 bits (27), Expect = 9e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 488 agcacaaatactacaacctgttcacctgcaactgttactcattcgtagcaaactgcctga 547 ||||||| | ||||||||| |||||||||||| | |||| ||||| || | |||||||| Sbjct: 122828 agcacaagtgctacaacctcttcacctgcaacagccactccttcgtggcgagctgcctga 122769 Query: 548 accggcttgcccacggcgg 566 |||| || ||| ||||||| Sbjct: 122768 accgcctcgcctacggcgg 122750
>emb|Z98751.1|HS560B9 Human DNA sequence from clone RP4-560B9 on chromosome 1q24-25 Contains three processed pseudogenes and the VAMP4 gene for vesicle-associated membrane protein 4, complete sequence Length = 99074 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 863 tgattattcatcttaaacttatc 885 ||||||||||||||||||||||| Sbjct: 50914 tgattattcatcttaaacttatc 50936
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 44.1 bits (22), Expect = 0.86 Identities = 22/22 (100%) Strand = Plus / Plus Query: 652 ttcgcgccattcgtgactgtga 673 |||||||||||||||||||||| Sbjct: 833998 ttcgcgccattcgtgactgtga 834019
>gb|DQ372900.1| Solanum tuberosum green ripe-like 1 mRNA, complete cds Length = 892 Score = 42.1 bits (21), Expect = 3.4 Identities = 51/61 (83%) Strand = Plus / Plus Query: 323 attttgcatatggttctgtcgctagatacctccagctggacagaaagaagtgctgctttc 382 ||||||||| |||||||| || | |||||| || || |||||||| |||||||||||| Sbjct: 346 attttgcattaggttctgtggccaaataccttcaactagacagaaaacagtgctgctttc 405 Query: 383 c 383 | Sbjct: 406 c 406
>gb|DQ372898.1| Lycopersicon esculentum green ripe-like 1 mRNA, complete cds Length = 989 Score = 42.1 bits (21), Expect = 3.4 Identities = 51/61 (83%) Strand = Plus / Plus Query: 323 attttgcatatggttctgtcgctagatacctccagctggacagaaagaagtgctgctttc 382 ||||||||| |||||||| || | |||||| || || |||||||| |||||||||||| Sbjct: 387 attttgcattaggttctgtggccaaataccttcaactagacagaaaacagtgctgctttc 446 Query: 383 c 383 | Sbjct: 447 c 447
>emb|AL357614.5|HS367B10 Homo sapiens chromosome 9 BAC RP11-367B10, complete sequence Length = 182378 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 582 tgttttgaatgtggcagctct 602 ||||||||||||||||||||| Sbjct: 112898 tgttttgaatgtggcagctct 112918 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 162,159,089 Number of extensions: 8277376 Number of successful extensions: 156042 Number of sequences better than 10.0: 19 Number of HSP's gapped: 156036 Number of HSP's successfully gapped: 52 Length of query: 902 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 879 Effective length of database: 18,503,978,556 Effective search space: 16264997150724 Effective search space used: 16264997150724 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
