Clone Information

BLAST Search Result

Clone Name	FLbaf6g10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	186	4e-43
2	dbj\|AP005406.3\| Oryza sativa (japonica cultivar-group) genomic D...	186	4e-43
3	ref\|NM_001067289.1\| Oryza sativa (japonica cultivar-group) Os08g...	172	5e-39
4	dbj\|AK102372.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	131	2e-26
5	gb\|AY106734.1\| Zea mays PCO080774 mRNA sequence	58	2e-04
6	gb\|AC157350.29\| Medicago truncatula clone mth2-143n6, complete s...	52	0.014
7	ref\|NM_001060779.1\| Oryza sativa (japonica cultivar-group) Os04g...	48	0.21
8	emb\|AL732344.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	48	0.21
9	emb\|AL732351.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	48	0.21
10	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.21
11	emb\|AL606457.3\|OSJN00002 Oryza sativa genomic DNA, chromosome 4,...	48	0.21
12	dbj\|AK103357.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.21
13	gb\|DQ786762.1\| Bos taurus BTA10 scaffold155430_14295 genomic seq...	46	0.83
14	ref\|XM_968399.1\| PREDICTED: Tribolium castaneum similar to WD-re...	46	0.83
15	gb\|AY872256.1\|AY872256S1 Oncorhynchus mykiss IgH.A locus, partia...	46	0.83
16	emb\|CT829187.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	44	3.3
17	dbj\|AK241088.1\| Oryza sativa (japonica cultivar-group) cDNA, clo...	44	3.3
18	ref\|NM_001065185.1\| Oryza sativa (japonica cultivar-group) Os06g...	44	3.3
19	ref\|NM_001061354.1\| Oryza sativa (japonica cultivar-group) Os05g...	44	3.3
20	gb\|AC123866.4\| Mus musculus BAC clone RP23-124I3 from chromosome...	44	3.3
21	gb\|AC124351.3\| Mus musculus BAC clone RP24-467D20 from chromosom...	44	3.3
22	gb\|AC103796.3\| Homo sapiens chromosome 11, clone RP11-1033A18, c...	44	3.3
23	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	3.3
24	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	3.3
25	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	3.3
26	dbj\|AP004752.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	3.3
27	dbj\|AP005750.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	3.3
28	dbj\|AK112003.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	3.3
29	dbj\|AK111549.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	3.3
30	emb\|BX072537.8\| Zebrafish DNA sequence from clone DKEY-15F17, co...	44	3.3
31	gb\|AE017125.1\| Helicobacter hepaticus ATCC 51449, complete genome	44	3.3
32	emb\|AL513423.3\|HS518K17 Homo sapiens chromosome 9 BAC RP11-518K1...	44	3.3
33	gb\|AC135425.3\| Oryza sativa (japonica cultivar-group) chromosome...	44	3.3

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780
 Score =  186 bits (94), Expect = 4e-43
 Identities = 190/222 (85%)
 Strand = Plus / Plus

                                                                         
Query: 712   ttgtgaaggttcgacactttcacctaagcatgttggtgatatactgtttgaggaaagctt 771
             |||||||| |||||||||||| ||||||  ||||||||| |||||||||||||| |  ||
Sbjct: 42390 ttgtgaagattcgacactttctcctaagtgtgttggtgacatactgtttgaggacacttt 42449

                                                                         
Query: 772   ttctcccagttcttcggtgaaagaagcctctgaaaaggctcctgatagtgaaaatgacaa 831
              || |||||||| || |||||||||||||||||| |||| | ||| |||||||||||  |
Sbjct: 42450 ctcacccagttcatcagtgaaagaagcctctgaagaggcacatgacagtgaaaatgatga 42509

                                                                         
Query: 832   tgagtacaatggctgttcagttgcttctgtttcaagtgcgtcttactctgatgagacaga 891
             ||| |||   | ||||||||||||||| |||| |||||  ||||||| ||||||||||||
Sbjct: 42510 tgattacccggcctgttcagttgcttcagttttaagtgtttcttactgtgatgagacaga 42569

                                                       
Query: 892   actgtctagaccaactacatcaggcctggaattgtttggaca 933
             ||||| ||||||||| ||| || |||||||||||||||||||
Sbjct: 42570 actgtatagaccaacaacagcatgcctggaattgtttggaca 42611



 Score =  137 bits (69), Expect = 3e-28
 Identities = 99/109 (90%)
 Strand = Plus / Plus

                                                                         
Query: 2598  gtgttgcctggtatcctgtttatcgcgtacctcatgggaacttccgtgcagcattcttga 2657
             |||||||||||||||||||||| || |||||||||||||| || ||||||||||| ||||
Sbjct: 45536 gtgttgcctggtatcctgtttaccgtgtacctcatgggaaattgcgtgcagcatttttga 45595

                                                              
Query: 2658  cataccattcactgggtaaattggttccacaaatatgctccccagattt 2706
             | |||||||||||||||||| |||||||||| | | |||||||||||||
Sbjct: 45596 cctaccattcactgggtaaactggttccacagaaaggctccccagattt 45644



 Score =  125 bits (63), Expect = 1e-24
 Identities = 129/151 (85%)
 Strand = Plus / Plus

                                                                         
Query: 2126  atatgggagtggtatgaagagccagggtgctatgggttggaagtaagagatctcgatgat 2185
             |||||||| ||||||||||||||||||||||||||||||||||| |||| |    |||||
Sbjct: 43955 atatgggaatggtatgaagagccagggtgctatgggttggaagtgagagcttgtaatgat 44014

                                                                         
Query: 2186  ctcagttccatgacatcacaccacaagagttcagagttctctgcatattttgtaccttat 2245
             |||||| |   |||||||  |  ||| ||||||||||||| |||||| ||||||||||| 
Sbjct: 44015 ctcagtccagagacatcattctgcaacagttcagagttctgtgcatactttgtaccttac 44074

                                            
Query: 2246  ctgtctgctattcagttgtttgggtggtcta 2276
              | |||||| |||||||||||||||||||||
Sbjct: 44075 ttatctgctgttcagttgtttgggtggtcta 44105



 Score =  109 bits (55), Expect = 7e-20
 Identities = 154/187 (82%)
 Strand = Plus / Plus

                                                                         
Query: 1854  ttgaagggaatcacagattaggaaagttttccagttctgaaatgcatctaattgagatga 1913
             ||||| |||||||||| ||   |||||| | |||| |||| |||| ||| | ||||||| 
Sbjct: 43683 ttgaatggaatcacagcttccaaaagttatgcagtgctgagatgcttctgactgagatgt 43742

                                                                         
Query: 1914  tcaaggttgttaatgatgcctatgaggtgcaagttgctgcagatgcctacatgtctgctg 1973
             ||| |||||||  |||||||||| | ||||||||| ||||||||||| || || |||| |
Sbjct: 43743 tcagggttgttggtgatgcctatcaagtgcaagtttctgcagatgcccacctggctgccg 43802

                                                                         
Query: 1974  gttatccgattactgatctcgagacatttctatactctgcaactccagtcattggtcatg 2033
             || |||| ||||||||||| || |||||| | || |  ||||||||||||||||||||||
Sbjct: 43803 gtcatccaattactgatcttgatacatttatctatttggcaactccagtcattggtcatg 43862

                    
Query: 2034  ttccttg 2040
             | |||||
Sbjct: 43863 taccttg 43869



 Score = 93.7 bits (47), Expect = 4e-15
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                         
Query: 2411  tcagaatcatcttcctctgcgcatgctcatggagaactcatttttgaatacttcgaaaca 2470
             |||||||||| |||||||   || | |||||||||| |||||||||| ||||| ||||||
Sbjct: 44228 tcagaatcattttcctctatacaagatcatggagaagtcatttttgagtactttgaaaca 44287

                                                
Query: 2471  gagcagccttcttttcgacctccgttgtttgaaaa 2505
             ||||||||||||||||| ||||| || ||||||||
Sbjct: 44288 gagcagccttcttttcggcctccattatttgaaaa 44322



 Score = 83.8 bits (42), Expect = 4e-12
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                         
Query: 1177  tagcagaggcagtgattttcatctagtaatttcgagaaagagagctagaaaagagaggaa 1236
             |||||| | ||| ||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct: 42885 tagcagtgacagcgatttccatctagtaatttcaagaaagagagctagaaaagagaagaa 42944

                               
Query: 1237  aatgtcaatgtggaagag 1254
             |||| || | ||||||||
Sbjct: 42945 aatggcactttggaagag 42962



 Score = 56.0 bits (28), Expect = 9e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                 
Query: 2820  gtgctgaagttgtggaggagaggctgaggacactgaagcgaggcgcattggc 2871
             ||||||||||| || | |||||||||||||||||| ||||||| ||| ||||
Sbjct: 46519 gtgctgaagttctgaaagagaggctgaggacactgcagcgaggtgcactggc 46570



 Score = 54.0 bits (27), Expect = 0.003
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 281   cgtcatgtagctcgtcttgaatctagacagcagca 315
             ||||| ||||||||||||||||| |||||||||||
Sbjct: 41727 cgtcaagtagctcgtcttgaatcaagacagcagca 41761



 Score = 46.1 bits (23), Expect = 0.83
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 384   catctccagaagatagccttgac 406
             |||||||||||||||||||||||
Sbjct: 42050 catctccagaagatagccttgac 42072



 Score = 46.1 bits (23), Expect = 0.83
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 2544  ctgaaaagctacaaaatgtgaaattgcatgatctgcatccggcttcttggt 2594
             |||||||||| ||||||||||||||   |||||| || |||||||| ||||
Sbjct: 45364 ctgaaaagctgcaaaatgtgaaattatgtgatcttcacccggcttcatggt 45414

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>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1147B12
          Length = 127902

 Score =  186 bits (94), Expect = 4e-43
 Identities = 190/222 (85%)
 Strand = Plus / Plus

                                                                         
Query: 712   ttgtgaaggttcgacactttcacctaagcatgttggtgatatactgtttgaggaaagctt 771
             |||||||| |||||||||||| ||||||  ||||||||| |||||||||||||| |  ||
Sbjct: 42390 ttgtgaagattcgacactttctcctaagtgtgttggtgacatactgtttgaggacacttt 42449

                                                                         
Query: 772   ttctcccagttcttcggtgaaagaagcctctgaaaaggctcctgatagtgaaaatgacaa 831
              || |||||||| || |||||||||||||||||| |||| | ||| |||||||||||  |
Sbjct: 42450 ctcacccagttcatcagtgaaagaagcctctgaagaggcacatgacagtgaaaatgatga 42509

                                                                         
Query: 832   tgagtacaatggctgttcagttgcttctgtttcaagtgcgtcttactctgatgagacaga 891
             ||| |||   | ||||||||||||||| |||| |||||  ||||||| ||||||||||||
Sbjct: 42510 tgattacccggcctgttcagttgcttcagttttaagtgtttcttactgtgatgagacaga 42569

                                                       
Query: 892   actgtctagaccaactacatcaggcctggaattgtttggaca 933
             ||||| ||||||||| ||| || |||||||||||||||||||
Sbjct: 42570 actgtatagaccaacaacagcatgcctggaattgtttggaca 42611



 Score =  137 bits (69), Expect = 3e-28
 Identities = 99/109 (90%)
 Strand = Plus / Plus

                                                                         
Query: 2598  gtgttgcctggtatcctgtttatcgcgtacctcatgggaacttccgtgcagcattcttga 2657
             |||||||||||||||||||||| || |||||||||||||| || ||||||||||| ||||
Sbjct: 45536 gtgttgcctggtatcctgtttaccgtgtacctcatgggaaattgcgtgcagcatttttga 45595

                                                              
Query: 2658  cataccattcactgggtaaattggttccacaaatatgctccccagattt 2706
             | |||||||||||||||||| |||||||||| | | |||||||||||||
Sbjct: 45596 cctaccattcactgggtaaactggttccacagaaaggctccccagattt 45644



 Score =  125 bits (63), Expect = 1e-24
 Identities = 129/151 (85%)
 Strand = Plus / Plus

                                                                         
Query: 2126  atatgggagtggtatgaagagccagggtgctatgggttggaagtaagagatctcgatgat 2185
             |||||||| ||||||||||||||||||||||||||||||||||| |||| |    |||||
Sbjct: 43955 atatgggaatggtatgaagagccagggtgctatgggttggaagtgagagcttgtaatgat 44014

                                                                         
Query: 2186  ctcagttccatgacatcacaccacaagagttcagagttctctgcatattttgtaccttat 2245
             |||||| |   |||||||  |  ||| ||||||||||||| |||||| ||||||||||| 
Sbjct: 44015 ctcagtccagagacatcattctgcaacagttcagagttctgtgcatactttgtaccttac 44074

                                            
Query: 2246  ctgtctgctattcagttgtttgggtggtcta 2276
              | |||||| |||||||||||||||||||||
Sbjct: 44075 ttatctgctgttcagttgtttgggtggtcta 44105



 Score =  109 bits (55), Expect = 7e-20
 Identities = 154/187 (82%)
 Strand = Plus / Plus

                                                                         
Query: 1854  ttgaagggaatcacagattaggaaagttttccagttctgaaatgcatctaattgagatga 1913
             ||||| |||||||||| ||   |||||| | |||| |||| |||| ||| | ||||||| 
Sbjct: 43683 ttgaatggaatcacagcttccaaaagttatgcagtgctgagatgcttctgactgagatgt 43742

                                                                         
Query: 1914  tcaaggttgttaatgatgcctatgaggtgcaagttgctgcagatgcctacatgtctgctg 1973
             ||| |||||||  |||||||||| | ||||||||| ||||||||||| || || |||| |
Sbjct: 43743 tcagggttgttggtgatgcctatcaagtgcaagtttctgcagatgcccacctggctgccg 43802

                                                                         
Query: 1974  gttatccgattactgatctcgagacatttctatactctgcaactccagtcattggtcatg 2033
             || |||| ||||||||||| || |||||| | || |  ||||||||||||||||||||||
Sbjct: 43803 gtcatccaattactgatcttgatacatttatctatttggcaactccagtcattggtcatg 43862

                    
Query: 2034  ttccttg 2040
             | |||||
Sbjct: 43863 taccttg 43869



 Score = 93.7 bits (47), Expect = 4e-15
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                         
Query: 2411  tcagaatcatcttcctctgcgcatgctcatggagaactcatttttgaatacttcgaaaca 2470
             |||||||||| |||||||   || | |||||||||| |||||||||| ||||| ||||||
Sbjct: 44228 tcagaatcattttcctctatacaagatcatggagaagtcatttttgagtactttgaaaca 44287

                                                
Query: 2471  gagcagccttcttttcgacctccgttgtttgaaaa 2505
             ||||||||||||||||| ||||| || ||||||||
Sbjct: 44288 gagcagccttcttttcggcctccattatttgaaaa 44322



 Score = 83.8 bits (42), Expect = 4e-12
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                         
Query: 1177  tagcagaggcagtgattttcatctagtaatttcgagaaagagagctagaaaagagaggaa 1236
             |||||| | ||| ||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct: 42885 tagcagtgacagcgatttccatctagtaatttcaagaaagagagctagaaaagagaagaa 42944

                               
Query: 1237  aatgtcaatgtggaagag 1254
             |||| || | ||||||||
Sbjct: 42945 aatggcactttggaagag 42962



 Score = 56.0 bits (28), Expect = 9e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                 
Query: 2820  gtgctgaagttgtggaggagaggctgaggacactgaagcgaggcgcattggc 2871
             ||||||||||| || | |||||||||||||||||| ||||||| ||| ||||
Sbjct: 46519 gtgctgaagttctgaaagagaggctgaggacactgcagcgaggtgcactggc 46570



 Score = 54.0 bits (27), Expect = 0.003
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 281   cgtcatgtagctcgtcttgaatctagacagcagca 315
             ||||| ||||||||||||||||| |||||||||||
Sbjct: 41727 cgtcaagtagctcgtcttgaatcaagacagcagca 41761



 Score = 46.1 bits (23), Expect = 0.83
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 384   catctccagaagatagccttgac 406
             |||||||||||||||||||||||
Sbjct: 42050 catctccagaagatagccttgac 42072



 Score = 46.1 bits (23), Expect = 0.83
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 2544  ctgaaaagctacaaaatgtgaaattgcatgatctgcatccggcttcttggt 2594
             |||||||||| ||||||||||||||   |||||| || |||||||| ||||
Sbjct: 45364 ctgaaaagctgcaaaatgtgaaattatgtgatcttcacccggcttcatggt 45414

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>ref|NM_001067289.1| Oryza sativa (japonica cultivar-group) Os08g0100600 (Os08g0100600)
            mRNA, partial cds
          Length = 1032

 Score =  172 bits (87), Expect = 5e-39
 Identities = 144/163 (88%)
 Strand = Plus / Plus

                                                                        
Query: 2544 ctgaaaagctacaaaatgtgaaattgcatgatctgcatccggcttcttggtactgtgttg 2603
            |||||||||| ||||||||||||||   |||||| || |||||||| |||| | ||||||
Sbjct: 33   ctgaaaagctgcaaaatgtgaaattatgtgatcttcacccggcttcatggttcagtgttg 92

                                                                        
Query: 2604 cctggtatcctgtttatcgcgtacctcatgggaacttccgtgcagcattcttgacatacc 2663
            |||||||||||||||| || |||||||||||||| || ||||||||||| ||||| ||||
Sbjct: 93   cctggtatcctgtttaccgtgtacctcatgggaaattgcgtgcagcatttttgacctacc 152

                                                       
Query: 2664 attcactgggtaaattggttccacaaatatgctccccagattt 2706
            |||||||||||||| |||||||||| | | |||||||||||||
Sbjct: 153  attcactgggtaaactggttccacagaaaggctccccagattt 195



 Score = 65.9 bits (33), Expect = 9e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                             
Query: 2745 ttggcctgcagagttacaatgacaagggtgagcagtggtttgagctgag 2793
            |||| ||||||||||||| ||||||||| |||||||||||| |||||||
Sbjct: 231  ttgggctgcagagttacagtgacaagggagagcagtggtttcagctgag 279



 Score = 56.0 bits (28), Expect = 9e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                
Query: 2820 gtgctgaagttgtggaggagaggctgaggacactgaagcgaggcgcattggc 2871
            ||||||||||| || | |||||||||||||||||| ||||||| ||| ||||
Sbjct: 333  gtgctgaagttctgaaagagaggctgaggacactgcagcgaggtgcactggc 384

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>dbj|AK102372.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091L19, full
            insert sequence
          Length = 1033

 Score =  131 bits (66), Expect = 2e-26
 Identities = 141/164 (85%), Gaps = 2/164 (1%)
 Strand = Plus / Plus

                                                                        
Query: 2544 ctgaaaagctacaaaatgtgaaattgcatgatctgcatccggcttcttggtactgtgttg 2603
            ||||| |||| ||||||||| ||||   |||||| || |||||||| |||| | |||| |
Sbjct: 33   ctgaanagctgcaaaatgtgnaattatgtgatcttcacccggcttcatggttcagtgt-g 91

                                                                        
Query: 2604 cctgg-tatcctgtttatcgcgtacctcatgggaacttccgtgcagcattcttgacatac 2662
            ||||| ||||||||||| || |||||||||||||| || ||||||||||| ||||| |||
Sbjct: 92   cctgggtatcctgtttaccgtgtacctcatgggaaattgcgtgcagcatttttgacctac 151

                                                        
Query: 2663 cattcactgggtaaattggttccacaaatatgctccccagattt 2706
            ||||||||||||||| |||||||||| | | |||||||||||||
Sbjct: 152  cattcactgggtaaactggttccacagaaaggctccccagattt 195



 Score = 65.9 bits (33), Expect = 9e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                             
Query: 2745 ttggcctgcagagttacaatgacaagggtgagcagtggtttgagctgag 2793
            |||| ||||||||||||| ||||||||| |||||||||||| |||||||
Sbjct: 231  ttgggctgcagagttacagtgacaagggagagcagtggtttcagctgag 279



 Score = 56.0 bits (28), Expect = 9e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                
Query: 2820 gtgctgaagttgtggaggagaggctgaggacactgaagcgaggcgcattggc 2871
            ||||||||||| || | |||||||||||||||||| ||||||| ||| ||||
Sbjct: 333  gtgctgaagttctgaaagagaggctgaggacactgcagcgaggtgcactggc 384

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>gb|AY106734.1| Zea mays PCO080774 mRNA sequence
          Length = 713

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 2756 agttacaatgacaagggtgagcagtggtttgagctgagatg 2796
            |||||||| |||||||| |||||||||||| ||||||||||
Sbjct: 1    agttacaacgacaagggagagcagtggtttcagctgagatg 41

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>gb|AC157350.29| Medicago truncatula clone mth2-143n6, complete sequence
          Length = 131960

 Score = 52.0 bits (26), Expect = 0.014
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 2924   catccagattatgagtttttcctgtc 2949
              ||||||||||||||||||||||||||
Sbjct: 105449 catccagattatgagtttttcctgtc 105424

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>ref|NM_001060779.1| Oryza sativa (japonica cultivar-group) Os04g0675000 (Os04g0675000)
            mRNA, complete cds
          Length = 3716

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 2216 tcagagttctctgcatattttgtaccttatctgtctgctattcagttgtttg 2267
            |||||||||| ||| || ||| |||||| ||| ||||||||||| |||||||
Sbjct: 2612 tcagagttctgtgcttactttttaccttctctatctgctattcaattgtttg 2663



 Score = 48.1 bits (24), Expect = 0.21
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 2755 gagttacaatgacaagggtgagcagtggtttgagctgaga 2794
            |||||||||||||||||| ||||| |||||| | ||||||
Sbjct: 3103 gagttacaatgacaagggagagcaatggtttcaactgaga 3142

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>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete
              sequence
          Length = 138387

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                  
Query: 2216   tcagagttctctgcatattttgtaccttatctgtctgctattcagttgtttg 2267
              |||||||||| ||| || ||| |||||| ||| ||||||||||| |||||||
Sbjct: 120107 tcagagttctgtgcttactttttaccttctctatctgctattcaattgtttg 120056

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>emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0103C06, complete
             sequence
          Length = 104146

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                 
Query: 2216  tcagagttctctgcatattttgtaccttatctgtctgctattcagttgtttg 2267
             |||||||||| ||| || ||| |||||| ||| ||||||||||| |||||||
Sbjct: 30440 tcagagttctgtgcttactttttaccttctctatctgctattcaattgtttg 30389

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                    
Query: 2216     tcagagttctctgcatattttgtaccttatctgtctgctattcagttgtttg 2267
                |||||||||| ||| || ||| |||||| ||| ||||||||||| |||||||
Sbjct: 34494680 tcagagttctgtgcttactttttaccttctctatctgctattcaattgtttg 34494629

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>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05,
              complete sequence
          Length = 164943

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                  
Query: 2216   tcagagttctctgcatattttgtaccttatctgtctgctattcagttgtttg 2267
              |||||||||| ||| || ||| |||||| ||| ||||||||||| |||||||
Sbjct: 112165 tcagagttctgtgcttactttttaccttctctatctgctattcaattgtttg 112114

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>dbj|AK103357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126L11, full
            insert sequence
          Length = 3716

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 2216 tcagagttctctgcatattttgtaccttatctgtctgctattcagttgtttg 2267
            |||||||||| ||| || ||| |||||| ||| ||||||||||| |||||||
Sbjct: 2613 tcagagttctgtgcttactttttaccttctctatctgctattcaattgtttg 2664



 Score = 48.1 bits (24), Expect = 0.21
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 2755 gagttacaatgacaagggtgagcagtggtttgagctgaga 2794
            |||||||||||||||||| ||||| |||||| | ||||||
Sbjct: 3104 gagttacaatgacaagggagagcaatggtttcaactgaga 3143

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>gb|DQ786762.1| Bos taurus BTA10 scaffold155430_14295 genomic sequence contig
             containing highly polymorphic single nucleotide sites
          Length = 27395

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 2400  acacatccttttcagaatcatcttcct 2426
             |||||||||| ||||||||||||||||
Sbjct: 20753 acacatccttgtcagaatcatcttcct 20727

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>ref|XM_968399.1| PREDICTED: Tribolium castaneum similar to WD-repeat protein 26
            (LOC662293), mRNA
          Length = 1668

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 2595 actgtgttgcctggtatcctgtttatc 2621
            |||||||||||||| ||||||||||||
Sbjct: 1547 actgtgttgcctggaatcctgtttatc 1573

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>gb|AY872256.1|AY872256S1 Oncorhynchus mykiss IgH.A locus, partial sequence
          Length = 106788

 Score = 46.1 bits (23), Expect = 0.83
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 1489  caatcattttacaagtccaaaag 1511
             |||||||||||||||||||||||
Sbjct: 87948 caatcattttacaagtccaaaag 87970

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>emb|CT829187.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN052M20, full
           insert sequence
          Length = 896

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 99  ggatcggagcggagcggagcgg 120
           ||||||||||||||||||||||
Sbjct: 108 ggatcggagcggagcggagcgg 87

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>dbj|AK241088.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065074E24, full
            insert sequence
          Length = 3780

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 2645 gcagcattcttgacataccattcact 2670
            ||||||||||| ||||||||||||||
Sbjct: 3161 gcagcattcttaacataccattcact 3186

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>ref|NM_001065185.1| Oryza sativa (japonica cultivar-group) Os06g0729500 (Os06g0729500)
            mRNA, complete cds
          Length = 4722

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 2645 gcagcattcttgacataccattcact 2670
            ||||||||||| ||||||||||||||
Sbjct: 4363 gcagcattcttaacataccattcact 4388

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>ref|NM_001061354.1| Oryza sativa (japonica cultivar-group) Os05g0182500 (Os05g0182500)
           mRNA, complete cds
          Length = 946

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 99  ggatcggagcggagcggagcgg 120
           ||||||||||||||||||||||
Sbjct: 87  ggatcggagcggagcggagcgg 66

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>gb|AC123866.4| Mus musculus BAC clone RP23-124I3 from chromosome 8, complete sequence
          Length = 217446

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2434   tgctcatggagaactcattttt 2455
              ||||||||||||||||||||||
Sbjct: 202254 tgctcatggagaactcattttt 202275

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>gb|AC124351.3| Mus musculus BAC clone RP24-467D20 from chromosome 8, complete
            sequence
          Length = 122811

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 2434 tgctcatggagaactcattttt 2455
            ||||||||||||||||||||||
Sbjct: 8934 tgctcatggagaactcattttt 8955

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>gb|AC103796.3| Homo sapiens chromosome 11, clone RP11-1033A18, complete sequence
          Length = 211799

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 3260   aacattttcattttacagatca 3281
              ||||||||||||||||||||||
Sbjct: 176443 aacattttcattttacagatca 176464

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 2645     gcagcattcttgacataccattcact 2670
                ||||||||||| ||||||||||||||
Sbjct: 30568461 gcagcattcttaacataccattcact 30568436

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 99      ggatcggagcggagcggagcgg 120
               ||||||||||||||||||||||
Sbjct: 4900711 ggatcggagcggagcggagcgg 4900690

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 3299   gctggttctgcttctgcaggtg 3320
              ||||||||||||||||||||||
Sbjct: 576582 gctggttctgcttctgcaggtg 576603

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>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0501G04
          Length = 156603

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 3299  gctggttctgcttctgcaggtg 3320
             ||||||||||||||||||||||
Sbjct: 54635 gctggttctgcttctgcaggtg 54656

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>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0069C14
          Length = 150579

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 2645  gcagcattcttgacataccattcact 2670
             ||||||||||| ||||||||||||||
Sbjct: 67024 gcagcattcttaacataccattcact 66999

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>dbj|AK112003.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F01, full
           insert sequence
          Length = 947

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 99  ggatcggagcggagcggagcgg 120
           ||||||||||||||||||||||
Sbjct: 88  ggatcggagcggagcggagcgg 67

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>dbj|AK111549.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057C14, full
           insert sequence
          Length = 2920

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 99  ggatcggagcggagcggagcgg 120
           ||||||||||||||||||||||
Sbjct: 109 ggatcggagcggagcggagcgg 88

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>emb|BX072537.8| Zebrafish DNA sequence from clone DKEY-15F17, complete sequence
          Length = 226685

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 3304   ttctgcttctgcaggtgcttct 3325
              ||||||||||||||||||||||
Sbjct: 115045 ttctgcttctgcaggtgcttct 115024

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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 2116    cctaaggaatatatgggagtgg 2137
               ||||||||||||||||||||||
Sbjct: 1031399 cctaaggaatatatgggagtgg 1031420

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>emb|AL513423.3|HS518K17 Homo sapiens chromosome 9 BAC RP11-518K17, complete sequence
          Length = 170535

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 788    gtgaaagaagcctctgaaaagg 809
              ||||||||||||||||||||||
Sbjct: 118686 gtgaaagaagcctctgaaaagg 118707

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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
              complete sequence
          Length = 187956

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 99     ggatcggagcggagcggagcgg 120
              ||||||||||||||||||||||
Sbjct: 173119 ggatcggagcggagcggagcgg 173098


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 644,079,557
Number of extensions: 36114456
Number of successful extensions: 188625
Number of sequences better than 10.0: 33
Number of HSP's gapped: 188623
Number of HSP's successfully gapped: 59
Length of query: 3396
Length of database: 18,610,659,111
Length adjustment: 24
Effective length of query: 3372
Effective length of database: 18,499,340,271
Effective search space: 62379775393812
Effective search space used: 62379775393812
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result