ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf6f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC115508.5| Rattus norvegicus 2 BAC CH230-355B17 (Children's ... 46 0.28
2gb|CP000479.1| Mycobacterium avium 104, complete genome 44 1.1
3ref|NM_001055157.1| Oryza sativa (japonica cultivar-group) Os02g... 44 1.1
4gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete s... 44 1.1
5gb|DQ306471.1| Oryctolagus cuniculus isolate Tol25 hypoxanthine ... 44 1.1
6ref|NM_170180.1| Drosophila melanogaster CG31121-RB, transcript ... 44 1.1
7ref|NM_170179.1| Drosophila melanogaster CG31121-RA, transcript ... 44 1.1
8gb|AC124041.3| Oryctolagus cuniculus clone LB1-44O5, complete se... 44 1.1
9gb|AY089579.1| Drosophila melanogaster RE11181 full insert cDNA 44 1.1
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 1.1
11emb|AJ238116.1|OSA238116 Oryza sativa mRNA for putative phosphol... 44 1.1
12gb|AC008205.7|AC008205 Drosophila melanogaster, chromosome 3R, r... 44 1.1
13gb|AC102555.11| Mus musculus chromosome 8, clone RP23-163N19, co... 44 1.1
14dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic D... 44 1.1
15dbj|AK108410.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 1.1
16gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 44 1.1
17gb|AC165414.9| Mus musculus chromosome 8, clone RP23-424A21, com... 44 1.1
18gb|AC109311.12| Mus musculus chromosome 5, clone RP23-42K10, com... 42 4.4
19gb|AC113501.7| Mus musculus chromosome 6, clone RP23-367E20, com... 42 4.4
20ref|XM_748939.1| Aspergillus fumigatus Af293 hypothetical protei... 42 4.4
21emb|AL954142.8| Zebrafish DNA sequence from clone CH211-214P13, ... 42 4.4

>gb|AC115508.5| Rattus norvegicus 2 BAC CH230-355B17 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 209019
 Score = 46.1 bits (23), Expect = 0.28
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 151    tccttcccatcgcccccctcccc 173
              |||||||||||||||||||||||
Sbjct: 125579 tccttcccatcgcccccctcccc 125601



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>gb|CP000479.1| Mycobacterium avium 104, complete genome
          Length = 5475491

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 268     gcggtcgcggttcgccagcgccgcag 293
               ||||||||||| ||||||||||||||
Sbjct: 2363650 gcggtcgcggtgcgccagcgccgcag 2363625



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>ref|NM_001055157.1| Oryza sativa (japonica cultivar-group) Os02g0831700 (Os02g0831700)
           mRNA, complete cds
          Length = 974

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 889 gaggagccctgcgacgacctcgaggcctactgtcgcaaccac 930
           |||||||||||||| |||||||| |||| ||| ||| |||||
Sbjct: 216 gaggagccctgcgatgacctcgacgcctgctgccgcgaccac 257



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>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence
          Length = 27905053

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 325      ccaccgccgccatccacctggc 346
                ||||||||||||||||||||||
Sbjct: 20709538 ccaccgccgccatccacctggc 20709559



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>gb|DQ306471.1| Oryctolagus cuniculus isolate Tol25 hypoxanthine
           phosphoribosyltransferase 1 (Hprt1) gene, intron 2
          Length = 1567

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 281 gccagcgccgcaggcggaggat 302
           ||||||||||||||||||||||
Sbjct: 935 gccagcgccgcaggcggaggat 956



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>ref|NM_170180.1| Drosophila melanogaster CG31121-RB, transcript variant B (CG31121),
            mRNA
          Length = 3144

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 325  ccaccgccgccatccacctggc 346
            ||||||||||||||||||||||
Sbjct: 1064 ccaccgccgccatccacctggc 1043



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>ref|NM_170179.1| Drosophila melanogaster CG31121-RA, transcript variant A (CG31121),
            mRNA
          Length = 3304

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 325  ccaccgccgccatccacctggc 346
            ||||||||||||||||||||||
Sbjct: 1224 ccaccgccgccatccacctggc 1203



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>gb|AC124041.3| Oryctolagus cuniculus clone LB1-44O5, complete sequence
          Length = 106159

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 281   gccagcgccgcaggcggaggat 302
             ||||||||||||||||||||||
Sbjct: 62955 gccagcgccgcaggcggaggat 62976



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>gb|AY089579.1| Drosophila melanogaster RE11181 full insert cDNA
          Length = 3313

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 325  ccaccgccgccatccacctggc 346
            ||||||||||||||||||||||
Sbjct: 1225 ccaccgccgccatccacctggc 1204



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 889      gaggagccctgcgacgacctcgaggcctactgtcgcaaccac 930
                |||||||||||||| |||||||| |||| ||| ||| |||||
Sbjct: 35790328 gaggagccctgcgatgacctcgacgcctgctgccgcgaccac 35790287



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>emb|AJ238116.1|OSA238116 Oryza sativa mRNA for putative phospholipase A2, isoform I
          Length = 804

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 889 gaggagccctgcgacgacctcgaggcctactgtcgcaaccac 930
           |||||||||||||| |||||||| |||| ||| ||| |||||
Sbjct: 205 gaggagccctgcgatgacctcgacgcctgctgccgcgaccac 246



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>gb|AC008205.7|AC008205 Drosophila melanogaster, chromosome 3R, region 96A-96B, BAC clone
              BACR33F18, complete sequence
          Length = 215711

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 325    ccaccgccgccatccacctggc 346
              ||||||||||||||||||||||
Sbjct: 170065 ccaccgccgccatccacctggc 170086



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>gb|AC102555.11| Mus musculus chromosome 8, clone RP23-163N19, complete sequence
          Length = 196060

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 460   acagggagaatcccatgtggag 481
             ||||||||||||||||||||||
Sbjct: 14051 acagggagaatcccatgtggag 14072



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>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1149_C12
          Length = 120743

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 889   gaggagccctgcgacgacctcgaggcctactgtcgcaaccac 930
             |||||||||||||| |||||||| |||| ||| ||| |||||
Sbjct: 61043 gaggagccctgcgatgacctcgacgcctgctgccgcgaccac 61002



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>dbj|AK108410.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H01, full
           insert sequence
          Length = 973

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 889 gaggagccctgcgacgacctcgaggcctactgtcgcaaccac 930
           |||||||||||||| |||||||| |||| ||| ||| |||||
Sbjct: 215 gaggagccctgcgatgacctcgacgcctgctgccgcgaccac 256



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 268     gcggtcgcggttcgccagcgccgcag 293
               ||||||||||| ||||||||||||||
Sbjct: 2073417 gcggtcgcggtgcgccagcgccgcag 2073442



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>gb|AC165414.9| Mus musculus chromosome 8, clone RP23-424A21, complete sequence
          Length = 192707

 Score = 44.1 bits (22), Expect = 1.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 460   acagggagaatcccatgtggag 481
             ||||||||||||||||||||||
Sbjct: 88098 acagggagaatcccatgtggag 88119



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>gb|AC109311.12| Mus musculus chromosome 5, clone RP23-42K10, complete sequence
          Length = 191698

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 660    acatcctttggtcagccacat 680
              |||||||||||||||||||||
Sbjct: 110359 acatcctttggtcagccacat 110339



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>gb|AC113501.7| Mus musculus chromosome 6, clone RP23-367E20, complete sequence
          Length = 196932

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   catcatctctcactcgctcta 195
             |||||||||||||||||||||
Sbjct: 77432 catcatctctcactcgctcta 77452



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>ref|XM_748939.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g06000) partial
            mRNA
          Length = 2901

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 685  ggcacgccgcaagcttctaga 705
            |||||||||||||||||||||
Sbjct: 2020 ggcacgccgcaagcttctaga 2040



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>emb|AL954142.8| Zebrafish DNA sequence from clone CH211-214P13, complete sequence
          Length = 238837

 Score = 42.1 bits (21), Expect = 4.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 530    tggttcaacgatgaccagatg 550
              |||||||||||||||||||||
Sbjct: 137110 tggttcaacgatgaccagatg 137090


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 150,054,466
Number of extensions: 7563562
Number of successful extensions: 139007
Number of sequences better than 10.0: 21
Number of HSP's gapped: 139007
Number of HSP's successfully gapped: 21
Length of query: 1149
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1126
Effective length of database: 18,503,978,556
Effective search space: 20835479854056
Effective search space used: 20835479854056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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