| Clone Name | FLbaf6f04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC115508.5| Rattus norvegicus 2 BAC CH230-355B17 (Children's Hospital Oakland Research Institute) complete sequence Length = 209019 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Plus Query: 151 tccttcccatcgcccccctcccc 173 ||||||||||||||||||||||| Sbjct: 125579 tccttcccatcgcccccctcccc 125601
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 268 gcggtcgcggttcgccagcgccgcag 293 ||||||||||| |||||||||||||| Sbjct: 2363650 gcggtcgcggtgcgccagcgccgcag 2363625
>ref|NM_001055157.1| Oryza sativa (japonica cultivar-group) Os02g0831700 (Os02g0831700) mRNA, complete cds Length = 974 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Plus Query: 889 gaggagccctgcgacgacctcgaggcctactgtcgcaaccac 930 |||||||||||||| |||||||| |||| ||| ||| ||||| Sbjct: 216 gaggagccctgcgatgacctcgacgcctgctgccgcgaccac 257
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 325 ccaccgccgccatccacctggc 346 |||||||||||||||||||||| Sbjct: 20709538 ccaccgccgccatccacctggc 20709559
>gb|DQ306471.1| Oryctolagus cuniculus isolate Tol25 hypoxanthine phosphoribosyltransferase 1 (Hprt1) gene, intron 2 Length = 1567 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 281 gccagcgccgcaggcggaggat 302 |||||||||||||||||||||| Sbjct: 935 gccagcgccgcaggcggaggat 956
>ref|NM_170180.1| Drosophila melanogaster CG31121-RB, transcript variant B (CG31121), mRNA Length = 3144 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 325 ccaccgccgccatccacctggc 346 |||||||||||||||||||||| Sbjct: 1064 ccaccgccgccatccacctggc 1043
>ref|NM_170179.1| Drosophila melanogaster CG31121-RA, transcript variant A (CG31121), mRNA Length = 3304 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 325 ccaccgccgccatccacctggc 346 |||||||||||||||||||||| Sbjct: 1224 ccaccgccgccatccacctggc 1203
>gb|AC124041.3| Oryctolagus cuniculus clone LB1-44O5, complete sequence Length = 106159 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 281 gccagcgccgcaggcggaggat 302 |||||||||||||||||||||| Sbjct: 62955 gccagcgccgcaggcggaggat 62976
>gb|AY089579.1| Drosophila melanogaster RE11181 full insert cDNA Length = 3313 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 325 ccaccgccgccatccacctggc 346 |||||||||||||||||||||| Sbjct: 1225 ccaccgccgccatccacctggc 1204
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Minus Query: 889 gaggagccctgcgacgacctcgaggcctactgtcgcaaccac 930 |||||||||||||| |||||||| |||| ||| ||| ||||| Sbjct: 35790328 gaggagccctgcgatgacctcgacgcctgctgccgcgaccac 35790287
>emb|AJ238116.1|OSA238116 Oryza sativa mRNA for putative phospholipase A2, isoform I Length = 804 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Plus Query: 889 gaggagccctgcgacgacctcgaggcctactgtcgcaaccac 930 |||||||||||||| |||||||| |||| ||| ||| ||||| Sbjct: 205 gaggagccctgcgatgacctcgacgcctgctgccgcgaccac 246
>gb|AC008205.7|AC008205 Drosophila melanogaster, chromosome 3R, region 96A-96B, BAC clone BACR33F18, complete sequence Length = 215711 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 325 ccaccgccgccatccacctggc 346 |||||||||||||||||||||| Sbjct: 170065 ccaccgccgccatccacctggc 170086
>gb|AC102555.11| Mus musculus chromosome 8, clone RP23-163N19, complete sequence Length = 196060 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 460 acagggagaatcccatgtggag 481 |||||||||||||||||||||| Sbjct: 14051 acagggagaatcccatgtggag 14072
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1149_C12 Length = 120743 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Minus Query: 889 gaggagccctgcgacgacctcgaggcctactgtcgcaaccac 930 |||||||||||||| |||||||| |||| ||| ||| ||||| Sbjct: 61043 gaggagccctgcgatgacctcgacgcctgctgccgcgaccac 61002
>dbj|AK108410.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H01, full insert sequence Length = 973 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Plus Query: 889 gaggagccctgcgacgacctcgaggcctactgtcgcaaccac 930 |||||||||||||| |||||||| |||| ||| ||| ||||| Sbjct: 215 gaggagccctgcgatgacctcgacgcctgctgccgcgaccac 256
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 268 gcggtcgcggttcgccagcgccgcag 293 ||||||||||| |||||||||||||| Sbjct: 2073417 gcggtcgcggtgcgccagcgccgcag 2073442
>gb|AC165414.9| Mus musculus chromosome 8, clone RP23-424A21, complete sequence Length = 192707 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 460 acagggagaatcccatgtggag 481 |||||||||||||||||||||| Sbjct: 88098 acagggagaatcccatgtggag 88119
>gb|AC109311.12| Mus musculus chromosome 5, clone RP23-42K10, complete sequence Length = 191698 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 660 acatcctttggtcagccacat 680 ||||||||||||||||||||| Sbjct: 110359 acatcctttggtcagccacat 110339
>gb|AC113501.7| Mus musculus chromosome 6, clone RP23-367E20, complete sequence Length = 196932 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 catcatctctcactcgctcta 195 ||||||||||||||||||||| Sbjct: 77432 catcatctctcactcgctcta 77452
>ref|XM_748939.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g06000) partial mRNA Length = 2901 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 685 ggcacgccgcaagcttctaga 705 ||||||||||||||||||||| Sbjct: 2020 ggcacgccgcaagcttctaga 2040
>emb|AL954142.8| Zebrafish DNA sequence from clone CH211-214P13, complete sequence Length = 238837 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 530 tggttcaacgatgaccagatg 550 ||||||||||||||||||||| Sbjct: 137110 tggttcaacgatgaccagatg 137090 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 150,054,466 Number of extensions: 7563562 Number of successful extensions: 139007 Number of sequences better than 10.0: 21 Number of HSP's gapped: 139007 Number of HSP's successfully gapped: 21 Length of query: 1149 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1126 Effective length of database: 18,503,978,556 Effective search space: 20835479854056 Effective search space used: 20835479854056 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)