ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf6e17 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os05g24560:12005.t02113:unspliced-genomic NC domain containing protein, expressed| Length = 2507 Score = 111 bits (238), Expect = 5e-24 Identities = 47/62 (75%), Positives = 52/62 (83%) Frame = +3 / +2 Query: 117 RLPSPSAFIHPGHSSPLRFLTTSASGLAIVTSGMYCVGRYVSDMGVRRDVIKVPVERLVE 296 +L S +A SSPLRFLTTSA GL +VTSGMYCVGRYVSD+GVRRDV+KVPVERLVE Sbjct: 1847 QLASLTAAFSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERLVE 2026 Query: 297 HW 302 HW Sbjct: 2027 HW 2032 Score = 70.7 bits (148), Expect = 1e-11 Identities = 31/57 (54%), Positives = 37/57 (64%) Frame = +2 / +1 Query: 161 AAAFPDN*C*WSGNCDKRHVLRGAICVRHGCSP*CDQGACGKACRALGEQCHSCSSS 331 AA PD+ W+G CD+RHVLRGAIC+R+ CSP C Q A G+A AL C SS Sbjct: 1891 AAPVPDDQRWWAGGCDERHVLRGAICLRYRCSPRCRQSARGEAGGALAAAGCCCCSS 2061 Score = 61.1 bits (127), Expect = 9e-09 Identities = 30/57 (52%), Positives = 35/57 (61%) Frame = -1 / -1 Query: 330 EEEQE*HCSPSALQAFPQAP*SHHGEHPCLTHIAPRNTCRLSQLPDH*H*LSGNAAA 160 EE+Q+ + SA A P+A * H GEH L HIAPR+TCR SQ P H SG AA Sbjct: 2060 EEQQQHPAAASAPPASPRAL*RHRGEHRYLRHIAPRSTCRSSQPPAHQRWSSGTGAA 1890 Score = 60.2 bits (125), Expect = 2e-08 Identities = 24/32 (75%), Positives = 27/32 (84%) Frame = -3 / -3 Query: 250 PMSDTYRPTQYMPLVTIARPLALVVRKRSGEE 155 P+S+TYRPTQYMPLVT P ALVVR RSG+E Sbjct: 1980 PISETYRPTQYMPLVTTTSPPALVVRNRSGDE 1885 Score = 58.8 bits (122), Expect = 5e-08 Identities = 22/34 (64%), Positives = 26/34 (76%) Frame = -2 / -2 Query: 302 PVLYKPFHRHLDHITANTHV*HISPHAIHAACHN 201 PVL++P H H D I ANT +* ISPHA+HAA HN Sbjct: 2032 PVLHQPLHGHFDDIAANTDI*DISPHAVHAARHN 1931 Score = 43.2 bits (88), Expect = 0.002 Identities = 16/25 (64%), Positives = 18/25 (72%) Frame = +1 / +3 Query: 211 AACIAWGDMCQTWVFAVM*SRCLWK 285 AAC AWGDM Q VFA M S+C W+ Sbjct: 1941 AACTAWGDMSQISVFAAMSSKCPWR 2015
>LOC_Os05g24550:12005.t02112:unspliced-genomic cathepsin B-like cysteine proteinase 3 precursor, putative, expressed| Length = 5896 Score = 111 bits (238), Expect = 5e-24 Identities = 47/62 (75%), Positives = 52/62 (83%) Frame = +3 / -1 Query: 117 RLPSPSAFIHPGHSSPLRFLTTSASGLAIVTSGMYCVGRYVSDMGVRRDVIKVPVERLVE 296 +L S +A SSPLRFLTTSA GL +VTSGMYCVGRYVSD+GVRRDV+KVPVERLVE Sbjct: 4969 QLASLTAAFSAVASSPLRFLTTSAGGLVVVTSGMYCVGRYVSDIGVRRDVVKVPVERLVE 4790 Query: 297 HW 302 HW Sbjct: 4789 HW 4784 Score = 70.7 bits (148), Expect = 1e-11 Identities = 31/57 (54%), Positives = 37/57 (64%) Frame = +2 / -3 Query: 161 AAAFPDN*C*WSGNCDKRHVLRGAICVRHGCSP*CDQGACGKACRALGEQCHSCSSS 331 AA PD+ W+G CD+RHVLRGAIC+R+ CSP C Q A G+A AL C SS Sbjct: 4925 AAPVPDDQRWWAGGCDERHVLRGAICLRYRCSPRCRQSARGEAGGALAAAGCCCCSS 4755 Score = 61.1 bits (127), Expect = 9e-09 Identities = 30/57 (52%), Positives = 35/57 (61%) Frame = -1 / +1 Query: 330 EEEQE*HCSPSALQAFPQAP*SHHGEHPCLTHIAPRNTCRLSQLPDH*H*LSGNAAA 160 EE+Q+ + SA A P+A * H GEH L HIAPR+TCR SQ P H SG AA Sbjct: 4756 EEQQQHPAAASAPPASPRAL*RHRGEHRYLRHIAPRSTCRSSQPPAHQRWSSGTGAA 4926 Score = 60.2 bits (125), Expect = 2e-08 Identities = 24/32 (75%), Positives = 27/32 (84%) Frame = -3 / +3 Query: 250 PMSDTYRPTQYMPLVTIARPLALVVRKRSGEE 155 P+S+TYRPTQYMPLVT P ALVVR RSG+E Sbjct: 4836 PISETYRPTQYMPLVTTTSPPALVVRNRSGDE 4931 Score = 58.8 bits (122), Expect = 5e-08 Identities = 22/34 (64%), Positives = 26/34 (76%) Frame = -2 / +2 Query: 302 PVLYKPFHRHLDHITANTHV*HISPHAIHAACHN 201 PVL++P H H D I ANT +* ISPHA+HAA HN Sbjct: 4784 PVLHQPLHGHFDDIAANTDI*DISPHAVHAARHN 4885 Score = 43.2 bits (88), Expect = 0.002 Identities = 16/25 (64%), Positives = 18/25 (72%) Frame = +1 / -2 Query: 211 AACIAWGDMCQTWVFAVM*SRCLWK 285 AAC AWGDM Q VFA M S+C W+ Sbjct: 4875 AACTAWGDMSQISVFAAMSSKCPWR 4801
>LOC_Os08g43350:12008.t04060:unspliced-genomic NC domain containing protein, expressed| Length = 2895 Score = 70.7 bits (148), Expect = 1e-11 Identities = 26/48 (54%), Positives = 35/48 (72%) Frame = +3 / +1 Query: 156 SSPLRFLTTSASGLAIVTSGMYCVGRYVSDMGVRRDVIKVPVERLVEH 299 S+P + L G+A VT+GMYC GRY++D+GVR+DV+KV VE L H Sbjct: 2308 STPFKLLAAGPLGMAAVTAGMYCAGRYITDIGVRKDVVKVEVENLSAH 2451 Score = 31.8 bits (63), Expect = 6.3 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -3 / -2 Query: 250 PMSDTYRPTQYMPLVTIARPLALVVRKRSGEE 155 PMS Y P QY+P VT A P +G E Sbjct: 2402 PMSVMYLPAQYIPAVTAAMPRGPAASSLNGVE 2307
>LOC_Os09g35810:12009.t03059:unspliced-genomic NC domain containing protein, expressed| Length = 3529 Score = 68.9 bits (144), Expect = 4e-11 Identities = 25/48 (52%), Positives = 34/48 (70%) Frame = +3 / +3 Query: 156 SSPLRFLTTSASGLAIVTSGMYCVGRYVSDMGVRRDVIKVPVERLVEH 299 S+PL+ G+A VT+GMYC GRY++D+GVR+DV K+ VE L H Sbjct: 2862 STPLKLFAAGPLGMATVTAGMYCAGRYITDIGVRKDVAKIEVENLSSH 3005 Score = 34.1 bits (68), Expect = 1.3 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -3 / -1 Query: 250 PMSDTYRPTQYMPLVTIARPLALVVRKRSG 161 PMS Y P QY+P VT+A P + SG Sbjct: 2956 PMSVMYLPAQYIPAVTVAIPSGPAAKSLSG 2867
>LOC_Os05g36910:12005.t03235:unspliced-genomic NC domain containing protein, expressed| Length = 2680 Score = 61.1 bits (127), Expect = 9e-09 Identities = 23/45 (51%), Positives = 33/45 (73%) Frame = +3 / +3 Query: 156 SSPLRFLTTSASGLAIVTSGMYCVGRYVSDMGVRRDVIKVPVERL 290 S+P R +TT+ G+A++ G+YC RY +D+G RRDV+KV VE L Sbjct: 1983 STPFRLVTTNIYGMAVMAVGVYCASRYAADIGNRRDVLKVEVEDL 2117
>LOC_Os08g23120:12008.t02084:unspliced-genomic heterogeneous nuclear ribonucleoprotein A3, putative, expressed| Length = 4236 Score = 26.3 bits (51), Expect(3) = 1.1 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +2 / +1 Query: 44 AGATAAFLVLCPCCFL 91 +G T A L+LC CCF+ Sbjct: 3133 SGRTLADLLLCFCCFI 3180 Score = 24.9 bits (48), Expect(3) = 1.1 Identities = 8/16 (50%), Positives = 9/16 (56%) Frame = +3 / +2 Query: 495 YCRSSIWLCEDCCSIP 542 Y R WLC CC+ P Sbjct: 3965 YVRLLDWLC*GCCTTP 4012 Score = 24.4 bits (47), Expect(3) = 1.1 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +1 / +3 Query: 721 LRCKAGTFSQDLSWHIFEL 777 LRC FS DLS+H ++ Sbjct: 4143 LRCNWSIFSVDLSYHRLDM 4199
>LOC_Os08g12370:12008.t01117:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 4551 Score = 32.2 bits (64), Expect(2) = 2.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 / -3 Query: 688 AAICLLCLYEILRCKAGTFSQDLSWHIFELNHVMS 792 AAIC CL+ IL C + +S+ L H+ L+ +S Sbjct: 3019 AAICDTCLWYILHCNSSFYSEHLLPHLLCLDDSVS 2915 Score = 23.1 bits (44), Expect(2) = 2.4 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = +1 / -2 Query: 541 PYQCVPCSSSCK 576 P Q VPCSSS K Sbjct: 3212 PNQIVPCSSSWK 3177
>LOC_Os09g29780:12009.t02656:unspliced-genomic expressed protein| Length = 3631 Score = 28.6 bits (56), Expect(2) = 2.6 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 / +2 Query: 72 CALVAS*PSQATSPNRLPSPSAFIHPGHSSPLR 170 C ++ P +A+ N SPS+F P S PLR Sbjct: 2429 CIFTSAGPVEASEANES*SPSSFAWPLFSFPLR 2527 Score = 26.3 bits (51), Expect(2) = 2.6 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 / +2 Query: 580 ICLWKKLVDLAVTICCLIPLLACCMNLFM*INLPPKAAICLL 705 + L K+L+ A++IC +L+ M F I P + CLL Sbjct: 3341 LALLKRLLVAALSICLSYKMLSLFMTHFPRIAGPGEHVFCLL 3466
>LOC_Os12g38810:12012.t03561:unspliced-genomic expressed protein| Length = 1490 Score = 32.7 bits (65), Expect = 3.4 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -1 / -1 Query: 597 LLPEAD*FT*RTAWNTLIRELSSNPHKAKSTNDNTAA 487 + P AD + AW ++R S P KA++ +NTAA Sbjct: 818 MAPAADSASVAAAWEVVVRPRRSAPLKARNMRENTAA 708
>LOC_Os05g45040:12005.t03992:unspliced-genomic F-box domain containing protein, expressed| Length = 2395 Score = 32.2 bits (64), Expect = 4.6 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +3 / +3 Query: 495 YCRSSIWLCEDCCSIP 542 YCRS IWLC+ C+ P Sbjct: 1905 YCRSVIWLCDLTCATP 1952
>LOC_Os04g19684:12004.t01708:unspliced-genomic methyl-CpG binding domain containing protein, expressed| Length = 11455 Score = 32.2 bits (64), Expect = 4.6 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 / -3 Query: 559 CSSSCKLICLWKKLVDLAVTICCLIPLL 642 CS+ ++ LWK + L VTI C + LL Sbjct: 3095 CSNVANIVSLWKARISLQVTIKCFLWLL 3012
>LOC_Os02g56470:12002.t05219:unspliced-genomic hypothetical protein| Length = 1763 Score = 32.2 bits (64), Expect = 4.6 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +1 / -2 Query: 544 YQCVPCSSSCKLICLWKKLVDLAVTICCLIPLLACCMNLFM*INL 678 Y C C++SC+ ++ LV A + L+ L CM++ + ++L Sbjct: 1033 YNCFSCAASCRYRYIYS*LVPHACSSPSLLSLWGSCMSILLFLDL 899
>LOC_Os02g57570:12002.t05328:unspliced-genomic transparent testa 12 protein, putative| Length = 1171 Score = 26.7 bits (52), Expect(2) = 5.6 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 / +2 Query: 661 RGSCSKLIRGLSSKSSQPDRPTSS 590 RG CS+ RG +S++P TSS Sbjct: 260 RGRCSRRSRGGCGRSARPSPSTSS 331 Score = 25.4 bits (49), Expect(2) = 5.6 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = -3 / +3 Query: 55 RCSRDSLSLSGRDCSCY 5 RCSR S S G C C+ Sbjct: 642 RCSRRSTSSRGPSCGCW 692
>LOC_Os08g05910:12008.t00483:unspliced-genomic peptide transporter PTR2, putative, expressed| Length = 8130 Score = 31.8 bits (63), Expect = 6.3 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -3 / +3 Query: 100 WLG*EATRAQHKEGGRCSRDSLSLSGRDCSC 8 W+G A A KEGG C + S S+ G SC Sbjct: 4707 WIGPYAKVA*EKEGGACEQCSFSIVGLPYSC 4799
>LOC_Os02g15880:12002.t01381:unspliced-genomic expressed protein| Length = 5030 Score = 31.8 bits (63), Expect = 6.3 Identities = 12/37 (32%), Positives = 15/37 (40%) Frame = +2 / +2 Query: 203 CDKRHVLRGAICVRHGCSP*CDQGACGKACRALGEQC 313 C K R +C+ HG C Q CGK + C Sbjct: 3836 CTKSAEGRSGLCIAHGGGRRCQQDGCGKGAQGSTNFC 3946
>LOC_Os10g40590:12010.t03299:unspliced-genomic oxysterol-binding protein 1, putative, expressed| Length = 5437 Score = 31.8 bits (63), Expect = 6.4 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = +1 / +3 Query: 559 CSSSCKLICLWKKLVDLAVTICCLIPLLACCMNLF 663 C+ SCKL+C W ++D+ ++ +P A + L+ Sbjct: 5298 CN*SCKLLCSWSWIMDVHLSFLTSVPSQASNLVLY 5402
>LOC_Os05g43374:12005.t03828:unspliced-genomic expressed protein| Length = 4714 Score = 31.8 bits (63), Expect = 6.4 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 / +2 Query: 529 AAQFPYQCVPCSSSCKLICLWKKLVDLAVTICCLIPLLACC 651 AAQ+ Y+ + S S L L +L + I CL L CC Sbjct: 2084 AAQYTYRLIYSSFSVTLFLCSVLLTNLLILIFCLCVFLICC 2206
>LOC_Os05g43370:12005.t004768:unspliced-genomic pseudouridylate synthase, putative, expressed| Length = 5837 Score = 31.8 bits (63), Expect = 6.4 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 / +3 Query: 529 AAQFPYQCVPCSSSCKLICLWKKLVDLAVTICCLIPLLACC 651 AAQ+ Y+ + S S L L +L + I CL L CC Sbjct: 3207 AAQYTYRLIYSSFSVTLFLCSVLLTNLLILIFCLCVFLICC 3329
>LOC_Os01g18460:12001.t01639:unspliced-genomic hypothetical protein| Length = 1003 Score = 31.8 bits (63), Expect = 6.4 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 / -3 Query: 673 NLPPKAAICLLCLYEILRCKAGTFSQDLSWHIFEL 777 +L P AA+C L + RC+ + + L W++F L Sbjct: 968 HLSPPAAVCRSHLLHLRRCRLLQYLEFLLWYLFHL 864
>LOC_Os06g29080:12006.t02612:unspliced-genomic ATP binding protein, putative, expressed| Length = 4080 Score = 25.4 bits (49), Expect(2) = 7.7 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +3 / +2 Query: 84 AS*PSQATSPNRLPSPSAFIHPGHSSP 164 +S PSQ +S P PS HSSP Sbjct: 482 SSSPSQGSSSPSPPPPSGSSSESHSSP 562 Score = 23.1 bits (44), Expect(2) = 7.7 Identities = 7/18 (38%), Positives = 11/18 (61%) Frame = +1 / +2 Query: 4 GNTSSPDPREKESRGSNG 57 G+ +P P E ++ SNG Sbjct: 365 GSNKAPPPEESDNSSSNG 418
>LOC_Os08g09740:12008.t00859:unspliced-genomic F-box domain containing protein, expressed| Length = 3371 Score = 27.2 bits (53), Expect(2) = 7.9 Identities = 8/16 (50%), Positives = 15/16 (93%) Frame = +2 / +3 Query: 695 YVYFACMKSYDVRREL 742 +++FAC KSY++++EL Sbjct: 2409 WLFFAC*KSYNIQKEL 2456 Score = 25.8 bits (50), Expect(2) = 7.9 Identities = 8/20 (40%), Positives = 10/20 (50%) Frame = +1 / +2 Query: 538 FPYQCVPCSSSCKLICLWKK 597 FP+ P + C C WKK Sbjct: 230 FPWLSCPVQARCSTKCRWKK 289
>LOC_Os12g41140:12012.t03791:unspliced-genomic expressed protein| Length = 6247 Score = 31.3 bits (62), Expect = 8.7 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = +3 / +1 Query: 93 PSQATSPNRLPSPSAFIHPGHSSP 164 PS TSP P PS HP SSP Sbjct: 4588 PSATTSPPPSPPPSTSAHPATSSP 4659
>LOC_Os12g40760:12012.t03754:unspliced-genomic expressed protein| Length = 956 Score = 31.3 bits (62), Expect = 8.7 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +3 / -1 Query: 69 CCALVAS*PSQATSPNRLPSPSAFIHPGHSSP 164 CC S P +AT P R PSP + P S P Sbjct: 539 CCCCWDSVPGRATRPRRWPSPRSRSPPPASPP 444
>LOC_Os10g06090:12010.t00479:unspliced-genomic OsWAK104 - OsWAK receptor-like protein kinase| Length = 6850 Score = 31.3 bits (62), Expect = 8.7 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +2 / -3 Query: 674 IYLRKQRYVYFACMKSY 724 +Y++K+ YVY+ CM SY Sbjct: 3347 VYIQKKLYVYYMCMNSY 3297
>LOC_Os04g26834:12004.t02389:unspliced-genomic pepsin A, putative, expressed| Length = 9149 Score = 31.3 bits (62), Expect = 8.7 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +2 / -3 Query: 5 VTRAVPTRERKRVAGATAAFLVLCPCCF 88 V R+V R R R G AA V PCCF Sbjct: 399 VVRSVRLRRRPRTTGGEAAAHVEHPCCF 316
>LOC_Os02g21130:12002.t01903:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3062 Score = 31.3 bits (62), Expect = 8.7 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -3 / +3 Query: 232 RPTQYMPLVTIARPLALVVRKRSGEECP 149 RPT+ +PL+ + RP A+ +R+R G P Sbjct: 993 RPTRPLPLLLLPRPAAVRLRRRGGSFPP 1076
>LOC_Os08g29124:12008.t02667:unspliced-genomic expressed protein| Length = 15769 Score = 31.3 bits (62), Expect = 8.7 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +1 / -3 Query: 562 SSSCKLICLWKKLVDLAVTICCLIPLLACCMNLFM*INLP 681 S+ C + L + V + +TI + L+C NL M IN+P Sbjct: 8813 STVCTHLVLHSRFVQVMLTISHVNAFLSCITNLMMHINIP 8694
>LOC_Os08g42870:12008.t04016:unspliced-genomic expressed protein| Length = 6162 Score = 24.4 bits (47), Expect(2) = 10.0 Identities = 8/27 (29%), Positives = 13/27 (48%) Frame = +1 / +2 Query: 544 YQCVPCSSSCKLICLWKKLVDLAVTIC 624 ++ C++ C L C K V + IC Sbjct: 3575 FKSTACATLCSLTCFQPKYVLMVCVIC 3655 Score = 23.5 bits (45), Expect(2) = 10.0 Identities = 7/9 (77%), Positives = 9/9 (100%) Frame = +1 / +3 Query: 628 LIPLLACCM 654 L+P+LACCM Sbjct: 3768 LLPVLACCM 3794 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 298,747,830 Number of extensions: 4576289 Number of successful extensions: 19615 Number of sequences better than 10.0: 28 Length of query: 269 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 220 Effective length of database: 52,856,264 Effective search space: 11628378080 Effective search space used: 11628378080 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
