ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf6e17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O88881:BEGIN_RAT Brain-enriched guanylate kinase-associated prot... 32 3.8
2P81182:BGBP_PENVA Beta-1,3-glucan-binding protein precursor - Pe... 32 3.9
3P38318:YB70_YEAST Uncharacterized membrane protein YBR220C - Sac... 31 5.0
4Q7TPN3:PIGV_MOUSE GPI mannosyltransferase 2 - Mus musculus (Mouse) 31 5.0

>O88881:BEGIN_RAT Brain-enriched guanylate kinase-associated protein - Rattus|
           norvegicus (Rat)
          Length = 611
 Score = 31.6 bits (70), Expect = 3.8
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 169 RSGEECPGWMNADGDGNRLGLVAWLG*EATRAQHKEGGRCSRDSLSLSGRDCS 11
           RS +  PG+  +DGDG+RLG+       +   +H      SRDSL  S  + S
Sbjct: 524 RSADPLPGYATSDGDGDRLGVQLCGPGSSPEPEHG-----SRDSLEPSSMEAS 571



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>P81182:BGBP_PENVA Beta-1,3-glucan-binding protein precursor - Penaeus vannamei (Penoeid|
            shrimp) (European white shrimp)
          Length = 1454

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 391  YQGKGSLLKWQRQEARWSYQGKGDLLKSKALFSCGIVVRRFGFVRIAAQFPYQ 549
            Y+ K + + +QR + + ++ GK ++  SKA F           +RIAA +  Q
Sbjct: 1020 YENKVAQINYQRNDIQMNFNGKANIKSSKASFDISFTPPSGQNIRIAASYDVQ 1072



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>P38318:YB70_YEAST Uncharacterized membrane protein YBR220C - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 560

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 502 VRRFGFVRIAAQFPYQCVPCSSSCKLICLWKKLVDLAVTICCLIP 636
           VR   F+ + ++F +QC   +++ KL+    K  DLAVT+   +P
Sbjct: 296 VRSLAFIHMISKFAFQCNEAATNLKLLEQGFKREDLAVTVLIDLP 340



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>Q7TPN3:PIGV_MOUSE GPI mannosyltransferase 2 - Mus musculus (Mouse)|
          Length = 493

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 472 SKALFSCGIVVRRFGFVRIAAQFPYQCVPCSSSCKLICLWKKLVDLAVTICCLIPLLACC 651
           S  LF+    VR  G V +      QC    SS  ++  WK LV L  ++C  + +++  
Sbjct: 192 SGLLFALAAGVRSNGLVSLGFLLHSQCRGFCSSLAVLSPWKPLVKLMASVCLSVLIVSLP 251

Query: 652 MNLF 663
             LF
Sbjct: 252 FALF 255


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 122,729,062
Number of extensions: 2435407
Number of successful extensions: 6227
Number of sequences better than 10.0: 4
Number of HSP's gapped: 6212
Number of HSP's successfully gapped: 4
Length of query: 269
Length of database: 100,686,439
Length adjustment: 111
Effective length of query: 158
Effective length of database: 70,239,694
Effective search space: 11097871652
Effective search space used: 11097871652
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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