>Q8LDQ4:TAP46_ARATH PP2A regulatory subunit TAP46 - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 405
 Score =  439 bits (1129), Expect = e-122
 Identities = 220/375 (58%), Positives = 277/375 (73%), Gaps = 8/375 (2%)
 Frame = +3

Query: 249  DQEGIRKGVDLLRRCDEMVSKLGLFSSNETKEDISTANLKYLLVPYYLGEMIEQVEQEDR 428
            DQ+ ++KG ++ ++C++M+ KL LFSSNETKEDIST NLKYLLVPYYL E+ E++ QEDR
Sbjct: 31   DQDVVKKGCEMFQKCEDMIGKLALFSSNETKEDISTNNLKYLLVPYYLAELTEKIIQEDR 90

Query: 429  IPVLKASQDHLKEFISVCEALELIPEAELQLYRQGQSETGANRRAQKVARYKRQKAAEMK 608
            I ++KAS   LKEF S CEA+EL+P+ EL+   +G S   A+RRA K+AR+KRQKAAE K
Sbjct: 91   IQIVKASYAKLKEFFSFCEAMELVPDEELEASSRGGSGAPADRRALKIARFKRQKAAEAK 150

Query: 609  LQEIKQRKERRGRSLRATALSAPIXXXXXXXXXXXXXXXXXAWLATISLSLCKAFDLVDM 788
            L EIK+RKERRGRS +A+ALS P+                 AWL++I+L++CKA DL++M
Sbjct: 151  LLEIKERKERRGRSTKASALSTPVESGEDDIPDDDSEEEREAWLSSINLAICKAIDLLEM 210

Query: 789  LKKEEEMLLAVKERKEKDGNA-FAREMLDERRQKAEEWHHNAASRAPYSKPAAPITCATF 965
            LK+EEEML A+KER+ KDG   F+R+ LD+R +KAE WH +AA+R  YSKPA PITCATF
Sbjct: 211  LKREEEMLSAIKERQLKDGEGGFSRDALDDRTKKAETWHRDAAARIQYSKPAQPITCATF 270

Query: 966  AQDVIEGRASVSQAHDHKHQPLIFGPASLVGGGLTSERERMAAQVFQPSFRMPTMSIEQA 1145
            AQDV+EGRASVSQ H+HK+QPLIFGPAS+VGG L++ERERM AQVFQPS RMPTM IE A
Sbjct: 271  AQDVLEGRASVSQGHEHKNQPLIFGPASIVGGPLSTERERMIAQVFQPSHRMPTMCIEDA 330

Query: 1146 GLAEMKMMEQWQESTAKMIQEASSSWH-------KDDTSLXXXXXXXXXXXXXXXXXWKD 1304
            GL EM +M  WQE T K I+EA++SW+       K++                    WKD
Sbjct: 331  GLTEMNIMNDWQEQTKKAIEEATTSWYNDKPLRRKEEDEEDDDEDEEAVMKARAFDDWKD 390

Query: 1305 ENPRGAGNKKLTPCG 1349
            +NPRGAGNKKLTPCG
Sbjct: 391  DNPRGAGNKKLTPCG 405

>Q9Y7T1:YCJ5_SCHPO Uncharacterized protein C63.05 - Schizosaccharomyces pombe (Fission|
            yeast)
          Length = 323

 Score = 82.8 bits (203), Expect = 4e-15
 Identities = 80/362 (22%), Positives = 151/362 (41%), Gaps = 10/362 (2%)
 Frame = +3

Query: 273  VDLLRRCDEMVSKLGLFSSNETKEDISTANLKYLLVPYYLGEMIEQVEQEDRIPVLKASQ 452
            V+   +C ++V +L +FSSNE  ++I T+ L+YL++ Y L + +EQ  + DR+  ++ ++
Sbjct: 31   VEGYEKCLKLVLQLRIFSSNEEVDEIKTSELRYLMIDYELAKCVEQWTKGDRLKAVQYAK 90

Query: 453  DHLKEFISVCEALELIPEAELQLYRQGQSETGANRRAQKVARYKRQKAAEMKLQEIKQRK 632
             H + F+S+C+   L P       +  + +T A+ R  K+ARY+ ++  E +L+ + +  
Sbjct: 91   THYETFLSICDDYGLKP------MQDEKPKTEADTRTLKIARYRMRQNLEKELKALSKDS 144

Query: 633  ERRGRSLRATALSAPIXXXXXXXXXXXXXXXXXAWLATISLSLCKAFDL-------VDML 791
            E      R                          WL  + +++    D        +D+L
Sbjct: 145  ETNEEQER------------------------KFWLTKLQIAVEDTLDSLPHIEMEIDLL 180

Query: 792  KKEEEMLLAVKERKEKDGNAFAREMLDERRQK-AEEWHHNAASRAPYSKPAAPITCATFA 968
            K+ +  L+  ++  EKD     RE   ER+QK    W  +  +R                
Sbjct: 181  KRAQAELMKSEDSPEKDEETLRRE---ERKQKEGSSWRLDLNTR---------------- 221

Query: 969  QDVIEGRASVSQAHDHKHQPLIFGPASLVGGGLTSERERMAAQVFQPSFRMPTMSIEQAG 1148
                       +  D  ++PL   P ++V     S+R      VF   + +PTM++++  
Sbjct: 222  ----------DKILDKNNRPL--QPFTIV-----SDRNETRKNVFGFGYNLPTMTVDEYL 264

Query: 1149 LAEMKM--MEQWQESTAKMIQEASSSWHKDDTSLXXXXXXXXXXXXXXXXXWKDENPRGA 1322
              EMK   +   +++  K   +    + K D                    +K+ NPRG+
Sbjct: 265  DEEMKRGNIISQKDNPPKSDSDDEDDYEKLDAK---------TMKDRYWDEFKEANPRGS 315

Query: 1323 GN 1328
            GN
Sbjct: 316  GN 317

>P78318:IGBP1_HUMAN Immunoglobulin-binding protein 1 - Homo sapiens (Human)|
          Length = 339

 Score = 75.1 bits (183), Expect = 7e-13
 Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 15/143 (10%)
 Frame = +3

Query: 252 QEGIRKGVDLLRRCDEMVSKLGLFSSNETKEDISTANLKYLLVPYYLGEM-IEQVEQEDR 428
           QE + KG+DLL +  EM+S+L LFS NE  E+I++ +LKYLLVP + G + ++QV    R
Sbjct: 39  QEKVFKGLDLLEKAAEMLSQLDLFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKR 98

Query: 429 IPVLKASQDHLKEFISVCEALELIPEAELQLYRQGQSETG--------------ANRRAQ 566
           +  L+ +++H   +++ C     + E EL       +E                A++R  
Sbjct: 99  LDHLQRAREHFINYLTQCHCYH-VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQA 157

Query: 567 KVARYKRQKAAEMKLQEIKQRKE 635
           K+ RYK++K  E +L  +K   E
Sbjct: 158 KIQRYKQKKELEHRLSAMKSAVE 180

>Q61249:IGBP1_MOUSE Immunoglobulin-binding protein 1 - Mus musculus (Mouse)|
          Length = 340

 Score = 70.9 bits (172), Expect = 1e-11
 Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 15/143 (10%)
 Frame = +3

Query: 252 QEGIRKGVDLLRRCDEMVSKLGLFSSNETKEDISTANLKYLLVPYYLGEM-IEQVEQEDR 428
           Q+ + KG++LL +   M+S+L LFS NE  E+I++ +LKYL+VP   G + ++QV    R
Sbjct: 40  QDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASTDLKYLMVPALQGALTMKQVNPSKR 99

Query: 429 IPVLKASQDHLKEFISVCEALELIPEAELQLYRQGQSETG--------------ANRRAQ 566
           +  L+ +++H   F++ C     + E +L   +   +E                A++R  
Sbjct: 100 LDHLQRAREHFVHFLTQCHCYH-VAEFQLPQTKTNSAENNTASSSMAYPNLVAMASQRQA 158

Query: 567 KVARYKRQKAAEMKLQEIKQRKE 635
           K+ RYK++K  E +L  +K   E
Sbjct: 159 KIERYKQKKEVEHRLSALKSAVE 181

>O08836:IGBP1_RAT Immunoglobulin-binding protein 1 - Rattus norvegicus (Rat)|
          Length = 340

 Score = 70.5 bits (171), Expect = 2e-11
 Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 15/143 (10%)
 Frame = +3

Query: 252 QEGIRKGVDLLRRCDEMVSKLGLFSSNETKEDISTANLKYLLVPYYLGEM-IEQVEQEDR 428
           Q+ + KG++LL +   M+S+L LFS NE  E+I++ +LKYL+VP   G + ++QV    R
Sbjct: 40  QDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASIDLKYLMVPALQGALTMKQVNPSKR 99

Query: 429 IPVLKASQDHLKEFISVCEALELIPEAELQLYRQGQSETG--------------ANRRAQ 566
           +  L+ +++H   F++ C     + E +L   +   +E                A++R  
Sbjct: 100 LDHLQRAREHFIHFLTQCHCYH-VAEFQLPQTKNNSAENNTARSSMAYPNLVAMASQRQA 158

Query: 567 KVARYKRQKAAEMKLQEIKQRKE 635
           K+ RYK++K  E +L  +K   E
Sbjct: 159 KIERYKQKKEVEHRLSALKSAVE 181

>Q9QZ29:IGB1B_MOUSE Immunoglobulin-binding protein 1b - Mus musculus (Mouse)|
          Length = 343

 Score = 69.7 bits (169), Expect = 3e-11
 Identities = 45/146 (30%), Positives = 80/146 (54%), Gaps = 18/146 (12%)
 Frame = +3

Query: 252 QEGIRKGVDLLRRCDEMVSKLGLFSSNETKEDISTANLKYLLVPYYLGEM-IEQVEQEDR 428
           QE +R+ + LL +  +M+S+L LFS NE  E+I++A+LKYL++P   G + ++ V    R
Sbjct: 40  QEKVREALKLLEKASDMLSQLDLFSRNEDWEEIASADLKYLMLPALKGALTLKLVGSSKR 99

Query: 429 IPVLKASQDHLKEFISVCEALELIPEAELQL-YRQGQSETG----------------ANR 557
           + +L+ +++H   F++   +  +   A+ QL + Q  S  G                A++
Sbjct: 100 LGLLQDAREHFMNFLTQTHSYHV---ADFQLPWAQSSSMEGNPAATSDAQEQNLVAMASQ 156

Query: 558 RAQKVARYKRQKAAEMKLQEIKQRKE 635
           R  K+ RYK++KA E +L  +K   E
Sbjct: 157 RQTKIQRYKQKKAVEQRLSSLKSAVE 182

>Q04372:TAP42_YEAST Type 2A phosphatase-associated protein 42 - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 366

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 33/152 (21%)
 Frame = +3

Query: 279 LLRRCDEMVSKLGLFSSNETKEDISTANLKYLLVPYYLGEMIEQVEQED---------RI 431
           LL     +  +L LFS+NET +D+STA++K+L V YYLG +I + +  D         ++
Sbjct: 42  LLNLKTAIFDRLALFSTNETIDDVSTASIKFLAVDYYLGLLISRRQSNDSDVAQRQSMKL 101

Query: 432 PVLKASQDHLKEFISVCEALELI----------------PEAELQLYRQGQSE---TGAN 554
             LK S +    F+++ +  +L+                P+   +LY Q ++    +GA 
Sbjct: 102 IYLKKSVESFINFLTLLQDYKLLDPLVGEKLGNFKDRYNPQLS-ELYAQPKNNKDLSGAQ 160

Query: 555 -RRAQKVARYKRQKAAEMKLQ----EIKQRKE 635
            +R +K+  ++R K    KL     E+K   E
Sbjct: 161 LKRKEKIELFQRNKEISTKLHCLELELKNNDE 192

>Q2TBR6:PFD4_BOVIN Prefoldin subunit 4 - Bos taurus (Bovine)|
          Length = 134

 Score = 35.0 bits (79), Expect = 0.85
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
 Frame = +3

Query: 249 DQEGIRKGVDLLRRCDEM-----VSKLGLFSSNETKEDISTANLKYLLVPYYLGEMIEQV 413
           DQ+ I K      R  E+     V K  L +  +  EDI  A+   L++PY +G++    
Sbjct: 19  DQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACEDIMLADDDCLMIPYQIGDVFISH 78

Query: 414 EQEDRIPVLKASQDHLKEFISVCEA-----LELIPEAELQLY 524
            QE+   +L+ ++ +L+E I   E+       ++ + ++QLY
Sbjct: 79  SQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLY 120

>Q9NQP4:PFD4_HUMAN Prefoldin subunit 4 - Homo sapiens (Human)|
          Length = 134

 Score = 33.9 bits (76), Expect = 1.9
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
 Frame = +3

Query: 249 DQEGIRKGVDLLRRCDEM-----VSKLGLFSSNETKEDISTANLKYLLVPYYLGEMIEQV 413
           DQ+ I K      R  E+     V K  L +  +  +DI  A+   L++PY +G++    
Sbjct: 19  DQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISH 78

Query: 414 EQEDRIPVLKASQDHLKEFISVCEA-----LELIPEAELQLY 524
            QE+   +L+ ++ +L+E I   E+       ++ + ++QLY
Sbjct: 79  SQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLY 120

>Q5QTY8:IF2_IDILO Translation initiation factor IF-2 - Idiomarina loihiensis|
          Length = 896

 Score = 33.9 bits (76), Expect = 1.9
 Identities = 34/157 (21%), Positives = 62/157 (39%)
 Frame = +3

Query: 504 EAELQLYRQGQSETGANRRAQKVARYKRQKAAEMKLQEIKQRKERRGRSLRATALSAPIX 683
           EA+L+   + + E    + A+  A+ +R+KA + K ++ K RKE+     +A A      
Sbjct: 120 EAKLREEEKQREEEQQRKEAEAKAKAEREKAEKEKAEKEKLRKEKEKERQKAEA------ 173

Query: 684 XXXXXXXXXXXXXXXXAWLATISLSLCKAFDLVDMLKKEEEMLLAVKERKEKDGNAFARE 863
                           A       +  KA    + LK+++E     +++ EK+  A A E
Sbjct: 174 ------------EKRAAMTPEEREAADKAKADAEKLKRQQEE--EARKKAEKEAEAQAEE 219

Query: 864 MLDERRQKAEEWHHNAASRAPYSKPAAPITCATFAQD 974
                 + A+ W      R    K     T ++ AQ+
Sbjct: 220 ARKLAEENAKRWEEEEQKRKQQEKEDVHFTTSSTAQE 256

>Q8WXD9:CSKI1_HUMAN Caskin-1 - Homo sapiens (Human)|
          Length = 1431

 Score = 33.9 bits (76), Expect = 1.9
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 2    ALSLPATLPPS*GFTPAISPTPSALALAVPSHP 100
            AL+ P   PPS G +PA  P+P A AL VP+ P
Sbjct: 1310 ALAKPPGTPPSLGASPAKPPSPGAPALHVPAKP 1342

>Q8VHK2:CSKI1_RAT Caskin-1 - Rattus norvegicus (Rat)|
          Length = 1430

 Score = 33.5 bits (75), Expect = 2.5
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 2    ALSLPATLPPS*GFTPAISPTPSALALAVPSHP 100
            AL  PA+ PPS   +PA  P+P A AL VP+ P
Sbjct: 1311 ALIKPASSPPSQSASPAKPPSPGAPALQVPTKP 1343

>Q9JIX8:ACINU_MOUSE Apoptotic chromatin condensation inducer in the nucleus - Mus|
           musculus (Mouse)
          Length = 1338

 Score = 32.7 bits (73), Expect = 4.2
 Identities = 38/137 (27%), Positives = 57/137 (41%)
 Frame = +3

Query: 249 DQEGIRKGVDLLRRCDEMVSKLGLFSSNETKEDISTANLKYLLVPYYLGEMIEQVEQEDR 428
           D E  RKG     R  +  SKL  +S    +E+      + L V       IE+ E+E+ 
Sbjct: 217 DDEKPRKGERRSSRVRQAKSKLPEYSQTAEEEEDQETPSRNLRVRADRNLKIEEEEEEEE 276

Query: 429 IPVLKASQDHLKEFISVCEALELIPEAELQLYRQGQSETGANRRAQKVARYKRQKAAEMK 608
               +   D  +E   V EA +   EAE    +Q + E G  R   K  +   +K   ++
Sbjct: 277 ----EEEDDDDEEEEEVDEA-QKSREAEAPTLKQFEDEEGEERTRAKPEKVVDEKPLNIR 331

Query: 609 LQEIKQRKERRGRSLRA 659
            QE K   E+ GR  R+
Sbjct: 332 SQE-KGELEKGGRVTRS 347

>P52172:SRP_DROME Box A-binding factor - Drosophila melanogaster (Fruit fly)|
          Length = 1264

 Score = 32.3 bits (72), Expect = 5.5
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = +2

Query: 971  RRH*RQSKCFTSS*PQTPTPDIWTCKSCWWGTHQ*EGKNGSTSFSA*FQDADNEHRTSRP 1150
            ++H +Q  C     P TPT  I+   S    THQ    N + + S+ F + +N + +S  
Sbjct: 992  QQHQQQQSCSMQHSPSTPT-SIFNTPS---PTHQLHNNNNNNNNSSIFNNNNNNNSSS-- 1045

Query: 1151 S*NENDGAMARKYRQ 1195
              NEN+  + +KY Q
Sbjct: 1046 --NENNNKLIQKYLQ 1058

>Q5KDJ0:SET2_CRYNE Histone-lysine N-methyltransferase, H3 lysine-36 specific -|
           Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 834

 Score = 32.0 bits (71), Expect = 7.2
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 528 QGQSETGANRRAQKVARYKRQKAAEMKLQEIKQRKERRGRSL 653
           Q  S    +R A+   R KRQK   M  +E+ ++KERR R L
Sbjct: 606 QAGSSRSGSRPAEDEERRKRQKRTHMTEEELAEQKERRLRKL 647

>Q06539:VDH_STRCO Valine dehydrogenase - Streptomyces coelicolor|
          Length = 364

 Score = 31.6 bits (70), Expect = 9.4
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 1071 W*VPHQQDLQVQISGVGVCGHELVKHLL 988
            W  P  +D  V I+GVG  GH LV+HLL
Sbjct: 177  WGDPTLRDRTVGIAGVGKVGHHLVEHLL 204

>O69056:VDH_STRAL Valine dehydrogenase - Streptomyces albus G|
          Length = 364

 Score = 31.6 bits (70), Expect = 9.4
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 1071 W*VPHQQDLQVQISGVGVCGHELVKHLL 988
            W  P  +D  V I+GVG  GH LV+HLL
Sbjct: 177  WGDPTLRDRTVGIAGVGKVGHHLVEHLL 204

>P81067:IRX3_MOUSE Iroquois-class homeodomain protein IRX-3 - Mus musculus (Mouse)|
          Length = 507

 Score = 31.6 bits (70), Expect = 9.4
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 789 LKKEEEMLLAVKERKEKDGNAFAREMLDERRQKAEE 896
           LKKE +M  A + R +++GNA+  E  +E  ++ EE
Sbjct: 188 LKKENKMTWAPRSRTDEEGNAYGSEREEEDEEEDEE 223

>P78415:IRX3_HUMAN Iroquois-class homeodomain protein IRX-3 - Homo sapiens (Human)|
          Length = 501

 Score = 31.6 bits (70), Expect = 9.4
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 789 LKKEEEMLLAVKERKEKDGNAFAREMLDERRQKAEE 896
           LKKE +M  A + R +++GNA+  E  +E  ++ EE
Sbjct: 185 LKKENKMTWAPRSRTDEEGNAYGSEREEEDEEEDEE 220


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 226,486,777
Number of extensions: 4486646
Number of successful extensions: 13856
Number of sequences better than 10.0: 19
Number of HSP's gapped: 13833
Number of HSP's successfully gapped: 20
Length of query: 513
Length of database: 100,686,439
Length adjustment: 118
Effective length of query: 395
Effective length of database: 68,319,629
Effective search space: 26986253455
Effective search space used: 26986253455
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)